AT3G53020

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000904
Physical Location & Seq
Reverse (-)
19660488 .. 19662025
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53020.1

Sequence Viewer

Length: 492 bp
ATGGTTCTCAAGACGGAGCTTTGTCGTTTCAGTGGACAGAAGATTTACCCAGGAAGAGGAATTAGGTTTATCCGATCTGATTCTCAGGTTTTCTTGTTTCTTAACTCAAAATGTAAGAGGTACTTCCATAACAAGTTGAAGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGAAGGATGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCCACCAAGAAGCCATACTCAAGGTCCATTGTTGGTGCTACCTTGGAAGTAATTCAGAAGAAGAGAGCTGAGAAGCCTGAAGTTCGTGATGCAGCCAGGGAAGCTGCTCTGCGTGAGATCAAGGAAAGAATCAAAAAGACCAAAGATGAAAAGAAGGCTAAGAAGGTGGAATTTGCTTCTAAGCAACAGAAGGTCAAGGCTAATTTCCCCAAAGCTGCTGCTGCATCCAAGGGTCCTAAGGTGGGAGGTGGTGGTGGCAAACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000027 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0023052 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048438 GO:0048467 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0070887 GO:0070925 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0090567 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902626 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L24e

Protein Analysis

163

Amino Acids

18.63

Weight (kDa)

10.78

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L24e PF01246 3 - 67 5.8e-29 Ribosomal protein L24e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 395
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 2 cut(s) 122, 170
AfiI CCNNNNNNNGG 2 cut(s) 56, 467
AgsI TTSAA 1 cut(s) 139
AjiI CACGTC 1 cut(s) 224
AjnI CCWGG 2 cut(s) 49, 320
AluBI AGCT 5 cut(s) 19, 151, 293, 329, 440
AluI AGCT 5 cut(s) 19, 151, 293, 329, 440
Alw26I GTCTC 1 cut(s) 214
ApeKI GCWGC 6 cut(s) 194, 317, 329, 440, 443, 446
ApoI RAATTY 1 cut(s) 395
Asp700I GAANNNNTTC 1 cut(s) 276
AspS9I GGNCC 2 cut(s) 249, 458
AvaII GGWCC 2 cut(s) 249, 458
AxyI CCTNAGG 1 cut(s) 462
BbvI GCAGC 6 cut(s) 206, 316, 329, 427, 430, 433
BccI CCATC 1 cut(s) 151
BciT130I CCWGG 2 cut(s) 51, 322
BcoDI GTCTC 1 cut(s) 214
BisI GCNGC 6 cut(s) 195, 318, 330, 441, 444, 447
BlsI GCNGC 6 cut(s) 196, 319, 331, 442, 445, 448
Bme1390I CCNGG 2 cut(s) 51, 322
Bme18I GGWCC 2 cut(s) 249, 458
BmgBI CACGTC 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 249, 458
BmiI GGNNCC 1 cut(s) 459
BmrFI CCNGG 2 cut(s) 51, 322
BmsI GCATC 3 cut(s) 181, 304, 458
BpuEI CTTGAG 1 cut(s) 229
BsaJI CCNNGG 4 cut(s) 49, 267, 321, 453
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 467
Bse21I CCTNAGG 1 cut(s) 462
BseBI CCWGG 2 cut(s) 51, 322
BseDI CCNNGG 4 cut(s) 49, 267, 321, 453
BseGI GGATG 3 cut(s) 143, 196, 449
BseLI CCNNNNNNNGG 2 cut(s) 56, 467
BseMII CTCAG 2 cut(s) 98, 285
BseXI GCAGC 6 cut(s) 206, 316, 329, 427, 430, 433
BslI CCNNNNNNNGG 2 cut(s) 56, 467
BsmAI GTCTC 1 cut(s) 214
BsmBI CGTCTC 1 cut(s) 214
Bsp1407I TGTACA 1 cut(s) 168
Bsp143I GATC 2 cut(s) 74, 342
BspCNI CTCAG 2 cut(s) 97, 286
BspLI GGNNCC 1 cut(s) 459
BsrGI TGTACA 1 cut(s) 168
BssECI CCNNGG 4 cut(s) 49, 267, 321, 453
BssMI GATC 2 cut(s) 74, 342
BssT1I CCWWGG 2 cut(s) 267, 453
Bst2UI CCWGG 2 cut(s) 51, 322
Bst6I CTCTTC 3 cut(s) 49, 206, 281
BstAPI GCANNNNNTGC 1 cut(s) 161
BstAUI TGTACA 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 5 cut(s) 84, 294, 384, 405, 462
BstF5I GGATG 3 cut(s) 143, 196, 449
BstKTI GATC 2 cut(s) 77, 345
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 2 cut(s) 74, 342
BstMWI GCNNNNNNNGC 5 cut(s) 148, 161, 203, 326, 446
BstNI CCWGG 2 cut(s) 51, 322
BstSCI CCNGG 2 cut(s) 49, 320
BstV1I GCAGC 6 cut(s) 206, 316, 329, 427, 430, 433
Bsu36I CCTNAGG 1 cut(s) 462
BtrI CACGTC 1 cut(s) 224
BtsCI GGATG 3 cut(s) 143, 196, 449
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 153
Cfr13I GGNCC 2 cut(s) 249, 458
Csp6I GTAC 2 cut(s) 121, 169
CviAII CATG 2 cut(s) 156, 166
CviQI GTAC 2 cut(s) 121, 169
DdeI CTNAG 5 cut(s) 84, 294, 384, 405, 462
DpnI GATC 2 cut(s) 76, 344
DpnII GATC 2 cut(s) 74, 342
Eam1104I CTCTTC 3 cut(s) 49, 206, 281
EarI CTCTTC 3 cut(s) 49, 206, 281
Eco130I CCWWGG 2 cut(s) 267, 453
Eco47I GGWCC 2 cut(s) 249, 458
Eco57I CTGAAG 1 cut(s) 324
Eco81I CCTNAGG 1 cut(s) 462
EcoO109I RGGNCCY 1 cut(s) 458
EcoRII CCWGG 2 cut(s) 49, 320
EcoT14I CCWWGG 2 cut(s) 267, 453
ErhI CCWWGG 2 cut(s) 267, 453
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 2 cut(s) 159, 169
FaiI YATR 4 cut(s) 129, 157, 167, 241
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 2 cut(s) 155, 165
Fnu4HI GCNGC 6 cut(s) 195, 318, 330, 441, 444, 447
FokI GGATG 3 cut(s) 130, 203, 436
Fsp4HI GCNGC 6 cut(s) 195, 318, 330, 441, 444, 447
GluI GCNGC 6 cut(s) 195, 318, 330, 441, 444, 447
Hin1II CATG 2 cut(s) 159, 169
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 2 cut(s) 80, 354
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 3 cut(s) 74, 79, 282
Hpy188III TCNNGA 2 cut(s) 10, 311
Hpy8I GTNNAC 1 cut(s) 35
HpyAV CCTTC 5 cut(s) 181, 210, 373, 382, 409
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 4 cut(s) 155, 194, 317, 449
HpyF10VI GCNNNNNNNGC 5 cut(s) 148, 161, 203, 326, 446
HpyF3I CTNAG 5 cut(s) 84, 294, 384, 405, 462
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 2 cut(s) 159, 169
Kzo9I GATC 2 cut(s) 74, 342
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 6 cut(s) 36, 63, 71, 307, 315, 334
Lsp1109I GCAGC 6 cut(s) 206, 316, 329, 427, 430, 433
LweI GCATC 3 cut(s) 181, 304, 458
MaeII ACGT 1 cut(s) 223
MalI GATC 2 cut(s) 76, 344
MboI GATC 2 cut(s) 74, 342
MboII GAAGA 5 cut(s) 52, 66, 223, 295, 298
MluCI AATT 4 cut(s) 60, 276, 395, 427
MnlI CCTC 4 cut(s) 50, 111, 196, 464
MroXI GAANNNNTTC 1 cut(s) 276
MseI TTAA 1 cut(s) 102
MspR9I CCNGG 2 cut(s) 51, 322
MvaI CCWGG 2 cut(s) 51, 322
MwoI GCNNNNNNNGC 5 cut(s) 148, 161, 203, 326, 446
NdeII GATC 2 cut(s) 74, 342
NlaIII CATG 2 cut(s) 159, 169
NlaIV GGNNCC 1 cut(s) 459
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 2 cut(s) 80, 354
PkrI GCNGC 6 cut(s) 196, 319, 331, 442, 445, 448
PpuMI RGGWCCY 1 cut(s) 458
Psp5II RGGWCCY 1 cut(s) 458
Psp6I CCWGG 2 cut(s) 49, 320
PspGI CCWGG 2 cut(s) 49, 320
PspN4I GGNNCC 1 cut(s) 459
PspPI GGNCC 2 cut(s) 249, 458
PspPPI RGGWCCY 1 cut(s) 458
RsaI GTAC 2 cut(s) 122, 170
RsaNI GTAC 2 cut(s) 121, 169
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 6 cut(s) 195, 318, 330, 441, 444, 447
Sau3AI GATC 2 cut(s) 74, 342
Sau96I GGNCC 2 cut(s) 249, 458
ScrFI CCNGG 2 cut(s) 51, 322
SfaNI GCATC 3 cut(s) 181, 304, 458
SinI GGWCC 2 cut(s) 249, 458
SmlI CTYRAG 2 cut(s) 8, 244
SmoI CTYRAG 2 cut(s) 8, 244
Sse9I AATT 4 cut(s) 60, 276, 395, 427
StyD4I CCNGG 2 cut(s) 49, 320
StyI CCWWGG 2 cut(s) 267, 453
TaiI ACGT 1 cut(s) 226
TasI AATT 4 cut(s) 60, 276, 395, 427
TatI WGTACW 1 cut(s) 168
TfiI GAWTC 2 cut(s) 80, 354
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 1 cut(s) 37
TseI GCWGC 6 cut(s) 194, 317, 329, 440, 443, 446
TspDTI ATGAA 1 cut(s) 387
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 37
VpaK11BI GGWCC 2 cut(s) 249, 458
XapI RAATTY 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.