Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

17401572 .. 17404215

Gene Structure 2644 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG195200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCATTTTAGTTTACTACTTCTAGTTGTTAACTGTTTTTTATGTTGGATTGCTAGGACCGAACTCTGTAGGTTCAGTGGGGCGAAGATCTACCCTGGTAGAGGCATCAGATTTATCCGGTCTGATTCTCAGGTGTTCCTCTTTGCCAATTCAAAATGCAAGAGGTACTTCCACAATCGGTTGAAGCCATCTAAGATTACCTGGACAGCCATGTACAGGAAGCAACACAAGAAGGATATTGCTCAAGAATCTGTTAAGAAGAGGAGACGTGCCAATAAGAAGCCTTATTCAAGGTCAATAGTTGGTGCCACCCTGGAGGTTATCCAGAAGAGGAGGACCGAAAAGCCTGAAGTTCGTGATGCTGCTCGTGAGGCCGCACTCCGTGAAATCAAGGAAAGGATCAAGAAAACCAAGGATGAAAAGAAGGCGAAGAAGGCAGAAGTTGTTGCCAAACAGAAGAGCAAGGGTCAGAATATTTCCAAGGGAGCTGCCCCCAAGGGTCCCAAGCTTGGCGGTGGCGGCGGCAAGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

177

Amino Acids

20.29

Weight (kDa)

10.75

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	19 - 82	2.5e-28	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	305
AciI	CCGC	4 cut(s)	375, 513, 519, 522
AclWI	GGATC	1 cut(s)	407
AcuI	CTGAAG	1 cut(s)	369
AdeI	CACNNNGTG	1 cut(s)	383
AfaI	GTAC	2 cut(s)	167, 215
AfeI	AGCGCT	1 cut(s)	530
AfiI	CCNNNNNNNGG	3 cut(s)	101, 216, 509
AgsI	TTSAA	3 cut(s)	153, 184, 291
AjiI	CACGTC	1 cut(s)	269
AjnI	CCWGG	3 cut(s)	94, 200, 312
AluBI	AGCT	2 cut(s)	488, 508
AluI	AGCT	2 cut(s)	488, 508
Alw26I	GTCTC	1 cut(s)	259
AlwI	GGATC	1 cut(s)	407
Aor51HI	AGCGCT	1 cut(s)	530
AoxI	GGCC	1 cut(s)	372
ApeKI	GCWGC	2 cut(s)	362, 488
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	3 cut(s)	57, 336, 500
AvaII	GGWCC	3 cut(s)	57, 336, 500
BanI	GGYRCC	1 cut(s)	305
BauI	CACGAG	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	349, 475
BccI	CCATC	1 cut(s)	196
BciT130I	CCWGG	3 cut(s)	96, 202, 314
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	2 cut(s)	23, 54
BfmI	CTRYAG	1 cut(s)	67
BfoI	RGCGCY	1 cut(s)	532
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	5 cut(s)	363, 375, 489, 520, 523
BlsI	GCNGC	5 cut(s)	364, 376, 490, 521, 524
Bme1390I	CCNGG	3 cut(s)	96, 202, 314
Bme18I	GGWCC	3 cut(s)	57, 336, 500
BmgBI	CACGTC	1 cut(s)	269
BmgT120I	GGNCC	3 cut(s)	57, 336, 500
BmiI	GGNNCC	3 cut(s)	307, 501, 502
BmrFI	CCNGG	3 cut(s)	96, 202, 314
BmsI	GCATC	2 cut(s)	114, 349
BpmI	CTGGAG	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	228
BsaJI	CCNNGG	5 cut(s)	94, 312, 411, 480, 495
BsaWI	WCCGGW	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 216, 509
BseBI	CCWGG	3 cut(s)	96, 202, 314
BseDI	CCNNGG	5 cut(s)	94, 312, 411, 480, 495
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	3 cut(s)	101, 216, 509
BseMII	CTCAG	1 cut(s)	143
BseRI	GAGGAG	2 cut(s)	277, 346
BseXI	GCAGC	2 cut(s)	349, 475
BshFI	GGCC	1 cut(s)	374
BshNI	GGYRCC	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	3 cut(s)	101, 216, 509
BsmAI	GTCTC	1 cut(s)	259
BsmBI	CGTCTC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	374
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	87, 399
BspACI	CCGC	4 cut(s)	375, 513, 519, 522
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	3 cut(s)	307, 501, 502
BspPI	GGATC	1 cut(s)	407
BspQI	GCTCTTC	1 cut(s)	452
BspT107I	GGYRCC	1 cut(s)	305
BsrGI	TGTACA	1 cut(s)	213
BssECI	CCNNGG	5 cut(s)	94, 312, 411, 480, 495
BssMI	GATC	2 cut(s)	87, 399
BssSI	CACGAG	1 cut(s)	366
BssT1I	CCWWGG	3 cut(s)	411, 480, 495
Bst2BI	CACGAG	1 cut(s)	366
Bst2UI	CCWGG	3 cut(s)	96, 202, 314
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	3 cut(s)	254, 323, 452
BstAUI	TGTACA	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	527
BstDEI	CTNAG	2 cut(s)	129, 192
BstENI	CCTNNNNNAGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	421
BstH2I	RGCGCY	1 cut(s)	532
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	2 cut(s)	90, 402
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	2 cut(s)	87, 399
BstMWI	GCNNNNNNNGC	4 cut(s)	371, 434, 519, 528
BstNI	CCWGG	3 cut(s)	96, 202, 314
BstSCI	CCNGG	3 cut(s)	94, 200, 312
BstSFI	CTRYAG	1 cut(s)	67
BstV1I	GCAGC	2 cut(s)	349, 475
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	374
BtrI	CACGTC	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	527
CfoI	GCGC	1 cut(s)	531
Cfr13I	GGNCC	3 cut(s)	57, 336, 500
Csp6I	GTAC	2 cut(s)	166, 214
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	7 cut(s)	187, 209, 283, 346, 374, 488, 508
CviKI_1	RGCY	7 cut(s)	187, 209, 283, 346, 374, 488, 508
CviQI	GTAC	2 cut(s)	166, 214
DdeI	CTNAG	2 cut(s)	129, 192
DpnI	GATC	2 cut(s)	89, 401
DpnII	GATC	2 cut(s)	87, 399
DraIII	CACNNNGTG	1 cut(s)	383
Eam1104I	CTCTTC	3 cut(s)	254, 323, 452
EarI	CTCTTC	3 cut(s)	254, 323, 452
Eco130I	CCWWGG	3 cut(s)	411, 480, 495
Eco47I	GGWCC	3 cut(s)	57, 336, 500
Eco47III	AGCGCT	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	369
EcoNI	CCTNNNNNAGG	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	500
EcoRII	CCWGG	3 cut(s)	94, 200, 312
EcoT14I	CCWWGG	3 cut(s)	411, 480, 495
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	3 cut(s)	411, 480, 495
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	1 cut(s)	214
FaiI	YATR	2 cut(s)	43, 212
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	1 cut(s)	210
Fnu4HI	GCNGC	5 cut(s)	363, 375, 489, 520, 523
FokI	GGATG	1 cut(s)	428
Fsp4HI	GCNGC	5 cut(s)	363, 375, 489, 520, 523
FspBI	CTAG	2 cut(s)	23, 54
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	5 cut(s)	363, 375, 489, 520, 523
GsuI	CTGGAG	1 cut(s)	335
HaeII	RGCGCY	1 cut(s)	532
HaeIII	GGCC	1 cut(s)	374
HapII	CCGG	1 cut(s)	118
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	2 cut(s)	125, 248
HpaI	GTTAAC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	14, 31
Hpy188I	TCNGA	3 cut(s)	110, 124, 471
Hpy188III	TCNNGA	5 cut(s)	245, 325, 356, 368, 403
Hpy8I	GTNNAC	2 cut(s)	14, 31
HpyAV	CCTTC	3 cut(s)	226, 418, 427
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	2 cut(s)	4, 159
HpyF10VI	GCNNNNNNNGC	4 cut(s)	371, 434, 519, 528
HpyF3I	CTNAG	2 cut(s)	129, 192
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	1 cut(s)	529
KflI	GGGWCCC	1 cut(s)	500
KspAI	GTTAAC	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	87, 399
LguI	GCTCTTC	1 cut(s)	452
LmnI	GCTCC	1 cut(s)	485
Lsp1109I	GCAGC	2 cut(s)	349, 475
LweI	GCATC	2 cut(s)	114, 349
MaeI	CTAG	2 cut(s)	23, 54
MaeII	ACGT	1 cut(s)	268
MalI	GATC	2 cut(s)	89, 401
MboI	GATC	2 cut(s)	87, 399
MboII	GAAGA	5 cut(s)	97, 271, 340, 442, 469
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	26
MnlI	CCTC	8 cut(s)	95, 149, 156, 255, 310, 324, 327, 364
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	30, 255
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	3 cut(s)	96, 202, 314
MvaI	CCWGG	3 cut(s)	96, 202, 314
MwoI	GCNNNNNNNGC	4 cut(s)	371, 434, 519, 528
NdeII	GATC	2 cut(s)	87, 399
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	3 cut(s)	307, 501, 502
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	452
PfeI	GAWTC	2 cut(s)	125, 248
PkrI	GCNGC	5 cut(s)	364, 376, 490, 521, 524
PpuMI	RGGWCCY	1 cut(s)	500
Psp5II	RGGWCCY	1 cut(s)	500
Psp6I	CCWGG	3 cut(s)	94, 200, 312
PspGI	CCWGG	3 cut(s)	94, 200, 312
PspN4I	GGNNCC	3 cut(s)	307, 501, 502
PspPI	GGNCC	3 cut(s)	57, 336, 500
PspPPI	RGGWCCY	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	2 cut(s)	167, 215
RsaNI	GTAC	2 cut(s)	166, 214
SapI	GCTCTTC	1 cut(s)	452
SaqAI	TTAA	2 cut(s)	30, 255
SatI	GCNGC	5 cut(s)	363, 375, 489, 520, 523
Sau3AI	GATC	2 cut(s)	87, 399
Sau96I	GGNCC	3 cut(s)	57, 336, 500
ScrFI	CCNGG	3 cut(s)	96, 202, 314
SetI	ASST	9 cut(s)	74, 135, 167, 203, 271, 296, 321, 490, 510
SfaNI	GCATC	2 cut(s)	114, 349
SfcI	CTRYAG	1 cut(s)	67
SinI	GGWCC	3 cut(s)	57, 336, 500
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	4 cut(s)	375, 513, 519, 522
SspI	AATATT	1 cut(s)	475
SspMI	CTAG	2 cut(s)	23, 54
StyD4I	CCNGG	3 cut(s)	94, 200, 312
StyI	CCWWGG	3 cut(s)	411, 480, 495
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	1 cut(s)	271
TaqII	GACCGA	2 cut(s)	74, 353
TasI	AATT	1 cut(s)	148
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	3 cut(s)	377, 522, 525
TfiI	GAWTC	2 cut(s)	125, 248
Tru1I	TTAA	2 cut(s)	30, 255
Tru9I	TTAA	2 cut(s)	30, 255
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	2 cut(s)	362, 488
TspDTI	ATGAA	1 cut(s)	432
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	3 cut(s)	57, 336, 500
XagI	CCTNNNNNAGG	1 cut(s)	99
XspI	CTAG	2 cut(s)	23, 54
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.