Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012026.1

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

1972 .. 2742

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012026.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgtacaggaagcaacacaagaaggatattgctcaagaatctgttaagaagaggagacgtgccaataagaagccttattcaaggtcaatagttggtgccaccctggaggttatccagaagaggaggaccgaaaagcctgaagttcgtgatgctgctcgtgaggccgcactccgtgaaatcaaggaaaggatcaagaaaaccaaggatgaaaagaaggcgaagaaggcagaagttgttgccaaacagaagagcaagggtcagaatatttccaagggagctgcccccaagggtcccaagcttggcggcggcggcggcaagcgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

107

Amino Acids

12.05

Weight (kDa)

10.78

Isoelectric Point (pI)

61.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	95
AciI	CCGC	5 cut(s)	165, 303, 306, 309, 312
AclWI	GGATC	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	159
AdeI	CACNNNGTG	1 cut(s)	173
AfaI	GTAC	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	1 cut(s)	81
AjiI	CACGTC	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	2 cut(s)	278, 298
AluI	AGCT	2 cut(s)	278, 298
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	197
Aor51HI	AGCGCT	1 cut(s)	320
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	152, 278
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	2 cut(s)	126, 290
AvaII	GGWCC	2 cut(s)	126, 290
BanI	GGYRCC	1 cut(s)	95
BauI	CACGAG	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	139, 265
BciT130I	CCWGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	49
BfoI	RGCGCY	1 cut(s)	322
BisI	GCNGC	7 cut(s)	153, 165, 279, 304, 307, 310, 313
BlsI	GCNGC	7 cut(s)	154, 166, 280, 305, 308, 311, 314
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	2 cut(s)	126, 290
BmgBI	CACGTC	1 cut(s)	59
BmgT120I	GGNCC	2 cut(s)	126, 290
BmiI	GGNNCC	3 cut(s)	97, 291, 292
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	18
BsaJI	CCNNGG	4 cut(s)	102, 201, 270, 285
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	4 cut(s)	102, 201, 270, 285
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseRI	GAGGAG	2 cut(s)	67, 136
BseXI	GCAGC	2 cut(s)	139, 265
BshFI	GGCC	1 cut(s)	164
BshNI	GGYRCC	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	1 cut(s)	49
BsmBI	CGTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	164
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	189
BspACI	CCGC	5 cut(s)	165, 303, 306, 309, 312
BspANI	GGCC	1 cut(s)	164
BspLI	GGNNCC	3 cut(s)	97, 291, 292
BspPI	GGATC	1 cut(s)	197
BspQI	GCTCTTC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	95
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	4 cut(s)	102, 201, 270, 285
BssMI	GATC	1 cut(s)	189
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	3 cut(s)	201, 270, 285
Bst2BI	CACGAG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	104
Bst6I	CTCTTC	3 cut(s)	44, 113, 242
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	211
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	1 cut(s)	192
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 224, 309, 312, 318
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	139, 265
BsuRI	GGCC	1 cut(s)	164
BtrI	CACGTC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	317
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	2 cut(s)	126, 290
Csp6I	GTAC	1 cut(s)	4
CviJI	RGCY	5 cut(s)	73, 136, 164, 278, 298
CviKI_1	RGCY	5 cut(s)	73, 136, 164, 278, 298
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
DraIII	CACNNNGTG	1 cut(s)	173
Eam1104I	CTCTTC	3 cut(s)	44, 113, 242
EarI	CTCTTC	3 cut(s)	44, 113, 242
Eco130I	CCWWGG	3 cut(s)	201, 270, 285
Eco47I	GGWCC	2 cut(s)	126, 290
Eco47III	AGCGCT	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	159
EcoO109I	RGGNCCY	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	3 cut(s)	201, 270, 285
ErhI	CCWWGG	3 cut(s)	201, 270, 285
Esp3I	CGTCTC	1 cut(s)	49
FaqI	GGGAC	1 cut(s)	276
Fnu4HI	GCNGC	7 cut(s)	153, 165, 279, 304, 307, 310, 313
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	7 cut(s)	153, 165, 279, 304, 307, 310, 313
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	7 cut(s)	153, 165, 279, 304, 307, 310, 313
GsuI	CTGGAG	1 cut(s)	125
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	321
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	1 cut(s)	38
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	5 cut(s)	35, 115, 146, 158, 193
HpyAV	CCTTC	3 cut(s)	16, 208, 217
HpyCH4IV	ACGT	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 224, 309, 312, 318
HpySE526I	ACGT	1 cut(s)	58
HspAI	GCGC	1 cut(s)	319
KflI	GGGWCCC	1 cut(s)	290
Kzo9I	GATC	1 cut(s)	189
LguI	GCTCTTC	1 cut(s)	242
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	4 cut(s)	89, 116, 128, 150
Lsp1109I	GCAGC	2 cut(s)	139, 265
LweI	GCATC	1 cut(s)	139
MaeII	ACGT	1 cut(s)	58
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	4 cut(s)	61, 130, 232, 259
MnlI	CCTC	5 cut(s)	45, 100, 114, 117, 154
MseI	TTAA	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	5 cut(s)	161, 224, 309, 312, 318
NdeII	GATC	1 cut(s)	189
NlaIV	GGNNCC	3 cut(s)	97, 291, 292
PciSI	GCTCTTC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	7 cut(s)	154, 166, 280, 305, 308, 311, 314
PpuMI	RGGWCCY	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	3 cut(s)	97, 291, 292
PspPI	GGNCC	2 cut(s)	126, 290
PspPPI	RGGWCCY	1 cut(s)	290
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	7 cut(s)	153, 165, 279, 304, 307, 310, 313
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	2 cut(s)	126, 290
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	5 cut(s)	61, 86, 111, 280, 300
SfaNI	GCATC	1 cut(s)	139
SinI	GGWCC	2 cut(s)	126, 290
SmlI	CTYRAG	1 cut(s)	33
SmoI	CTYRAG	1 cut(s)	33
SsiI	CCGC	5 cut(s)	165, 303, 306, 309, 312
SspI	AATATT	1 cut(s)	265
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	3 cut(s)	201, 270, 285
TaiI	ACGT	1 cut(s)	61
TaqII	GACCGA	1 cut(s)	143
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	5 cut(s)	167, 306, 309, 312, 315
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TseI	GCWGC	2 cut(s)	152, 278
TspDTI	ATGAA	1 cut(s)	222
TspGWI	ACGGA	1 cut(s)	161
VpaK11BI	GGWCC	2 cut(s)	126, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.