Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

44664964 .. 44665587

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003128

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGTTTTCAAGACTGAGCTTTGCCGATTCAGTGGCTCCAAGATCTACCCTGGTAGGGGCATCAGATTCATCCGCTCCGATTCTCAGGTTTTCCTGTTCATAAATTCCAAGTGCAAGAGGTACTTCCACAACCGCCTCAAGCCATCCAAGATCACATGGACTGCCATGTTCAGAAAGCAGCACAAGAAGGACTCTGCTCAAGAATCTGTGAAGAAGAAGCGCCGTGCCACCAAGAAGCCTTACTCAAGGTCCATTGTTGGTGCCACTTTGGAGGTCATCCAGAAGAGGAGGACTGAGAAGCCTGAGGTCCGTGACGCTGCTCGCAAGGCCGCTCTCTGGTATGCAATGCTATTATGTTTTGCTTCATTTGATGAACTTCATAGATTTGATTGTAGGTGTTTTTCGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

137

Amino Acids

16.15

Weight (kDa)

10.5

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	4 - 67	6.7e-28	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	260
AccBSI	CCGCTC	2 cut(s)	75, 332
AciI	CCGC	3 cut(s)	73, 133, 330
AcsI	RAATTY	1 cut(s)	103
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	3 cut(s)	55, 56, 336
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	2 cut(s)	178, 317
ApoI	RAATTY	1 cut(s)	103
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	2 cut(s)	249, 307
AsuII	TTCGAA	1 cut(s)	404
AvaII	GGWCC	2 cut(s)	249, 307
AxyI	CCTNAGG	1 cut(s)	303
BanI	GGYRCC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	190, 304
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	223
BglII	AGATCT	1 cut(s)	42
BisI	GCNGC	3 cut(s)	179, 318, 330
BlsI	GCNGC	3 cut(s)	180, 319, 331
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	2 cut(s)	249, 307
BmgT120I	GGNCC	2 cut(s)	249, 307
BmiI	GGNNCC	2 cut(s)	37, 262
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	404
BpuEI	CTTGAG	3 cut(s)	122, 183, 229
BsaJI	CCNNGG	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 56, 336
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	3 cut(s)	69, 143, 276
BseLI	CCNNNNNNNGG	3 cut(s)	55, 56, 336
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	4 cut(s)	6, 98, 285, 294
BseRI	GAGGAG	1 cut(s)	301
BseXI	GCAGC	2 cut(s)	190, 304
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	260
BslI	CCNNNNNNNGG	3 cut(s)	55, 56, 336
BsnI	GGCC	1 cut(s)	329
Bsp119I	TTCGAA	1 cut(s)	404
Bsp143I	GATC	2 cut(s)	42, 150
BspACI	CCGC	3 cut(s)	73, 133, 330
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	4 cut(s)	7, 97, 286, 295
BspLI	GGNNCC	2 cut(s)	37, 262
BspT104I	TTCGAA	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	260
BsrBI	CCGCTC	2 cut(s)	75, 332
BsrDI	GCAATG	1 cut(s)	351
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	2 cut(s)	42, 150
Bst2UI	CCWGG	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	278
BstBI	TTCGAA	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	4 cut(s)	15, 84, 294, 303
BstF5I	GGATG	3 cut(s)	69, 143, 276
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	2 cut(s)	45, 153
BstMBI	GATC	2 cut(s)	42, 150
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstV1I	GCAGC	2 cut(s)	190, 304
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	329
BtsCI	GGATG	3 cut(s)	69, 143, 276
BtsIMutI	CAGTG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	322
CfoI	GCGC	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	249, 307
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	2 cut(s)	156, 166
CviJI	RGCY	6 cut(s)	19, 36, 142, 238, 301, 329
CviKI_1	RGCY	6 cut(s)	19, 36, 142, 238, 301, 329
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	4 cut(s)	15, 84, 294, 303
DpnI	GATC	2 cut(s)	44, 152
DpnII	GATC	2 cut(s)	42, 150
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco47I	GGWCC	2 cut(s)	249, 307
Eco81I	CCTNAGG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	49
FaeI	CATG	2 cut(s)	159, 169
FaiI	YATR	6 cut(s)	101, 157, 167, 342, 355, 381
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	2 cut(s)	155, 165
Fnu4HI	GCNGC	3 cut(s)	179, 318, 330
FokI	GGATG	3 cut(s)	56, 130, 263
Fsp4HI	GCNGC	3 cut(s)	179, 318, 330
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	3 cut(s)	179, 318, 330
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	329
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	159, 169
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HinfI	GANTC	5 cut(s)	27, 66, 80, 191, 203
Hpy188I	TCNGA	3 cut(s)	65, 79, 173
Hpy188III	TCNNGA	3 cut(s)	10, 200, 280
HpyAV	CCTTC	1 cut(s)	181
HpyCH4V	TGCA	2 cut(s)	114, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	4 cut(s)	15, 84, 294, 303
Hsp92II	CATG	2 cut(s)	159, 169
HspAI	GCGC	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	42, 150
LmnI	GCTCC	2 cut(s)	41, 80
LpnPI	CCDG	7 cut(s)	36, 63, 71, 107, 293, 315, 322
Lsp1109I	GCAGC	2 cut(s)	190, 304
LweI	GCATC	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	2 cut(s)	44, 152
MbiI	CCGCTC	2 cut(s)	75, 332
MboI	GATC	2 cut(s)	42, 150
MboII	GAAGA	3 cut(s)	223, 226, 295
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	6 cut(s)	111, 146, 265, 279, 282, 298
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeII	GATC	2 cut(s)	42, 150
NlaIII	CATG	2 cut(s)	159, 169
NlaIV	GGNNCC	2 cut(s)	37, 262
NmuCI	GTSAC	1 cut(s)	311
NspV	TTCGAA	1 cut(s)	404
PfeI	GAWTC	4 cut(s)	27, 66, 80, 203
PkrI	GCNGC	3 cut(s)	180, 319, 331
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	37, 262
PspPI	GGNCC	2 cut(s)	249, 307
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SatI	GCNGC	3 cut(s)	179, 318, 330
Sau3AI	GATC	2 cut(s)	42, 150
Sau96I	GGNCC	2 cut(s)	249, 307
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	51
SetI	ASST	7 cut(s)	21, 90, 122, 251, 276, 309, 398
SfaNI	GCATC	1 cut(s)	69
SfuI	TTCGAA	1 cut(s)	404
SinI	GGWCC	2 cut(s)	249, 307
SmlI	CTYRAG	3 cut(s)	137, 198, 244
SmoI	CTYRAG	3 cut(s)	137, 198, 244
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	3 cut(s)	73, 133, 330
StyD4I	CCNGG	1 cut(s)	49
TaqI	TCGA	1 cut(s)	404
TasI	AATT	1 cut(s)	103
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	4 cut(s)	27, 66, 80, 203
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	2 cut(s)	178, 317
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	5 cut(s)	58, 88, 354, 368, 387
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	2 cut(s)	249, 307
XapI	RAATTY	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.