Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

31942178 .. 31943700

Gene Structure 1523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1145600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGTTCTGAAGACGGAACTCTGCCGTTTCAGCGGCGACAAGATTTACCCGGGAAAGGGAATCCGATTCATCCGCTCCGATTCCCAGGTCTTCCTCTTCGCCAATTCCAAATGCAAGAGGTACTTCCACAACCGCCTCAAGCCTTCAAAGCTCACCTGGACCGCCATGTACCGGAAGCAACACAAGAAGGATATTGCTGCCGAATCTGTGAAGAAGAGGCGCCGTTCGACCAAGAAGCCCTATTCGAGGTCCATTGTTGGTGCCACATTGGAAGTTATCCAGAAGCGAAGGACTGAAAAGCCCGAAGTTCGTGACGCTGCCCGTGAGGCGGCTCTTCGTGAAATTAAGGAGAGGATTAAGAAGACCAAGGATGAGAAGAAGGTGAAGAAATCTGAATTGGTGTCCAAGTCAAAGGTTCAGTCCAAGGGAAACATGCCCAAGGCTGCTGCTCCTAAGGCCGCCAAGCTCGGAGGTGGTGGTGGAAAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

164

Amino Acids

18.62

Weight (kDa)

10.7

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	3 - 67	1.9e-28	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	219, 260
AccBSI	CCGCTC	1 cut(s)	75
AciI	CCGC	6 cut(s)	33, 73, 133, 162, 329, 459
AcuI	CTGAAG	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	220
AfaI	GTAC	2 cut(s)	122, 170
AfiI	CCNNNNNNNGG	5 cut(s)	55, 56, 171, 246, 328
AgsI	TTSAA	1 cut(s)	147
AjnI	CCWGG	2 cut(s)	84, 155
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	2 cut(s)	151, 466
AluI	AGCT	2 cut(s)	151, 466
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	456
ApeKI	GCWGC	4 cut(s)	197, 317, 443, 446
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	2 cut(s)	159, 249
AsuC2I	CCSGG	2 cut(s)	50, 51
AsuHPI	GGTGA	2 cut(s)	145, 394
AvaI	CYCGRG	1 cut(s)	49
AvaII	GGWCC	2 cut(s)	159, 249
AxyI	CCTNAGG	1 cut(s)	453
BanI	GGYRCC	2 cut(s)	219, 260
BbsI	GAAGAC	3 cut(s)	17, 82, 368
BbvI	GCAGC	4 cut(s)	184, 304, 430, 433
BceAI	ACGGC	2 cut(s)	9, 207
BciT130I	CCWGG	2 cut(s)	86, 157
BcnI	CCSGG	2 cut(s)	50, 51
BfoI	RGCGCY	1 cut(s)	223
BglI	GCCNNNNNGGC	1 cut(s)	326
BisI	GCNGC	7 cut(s)	34, 198, 318, 330, 444, 447, 459
BlsI	GCNGC	7 cut(s)	35, 199, 319, 331, 445, 448, 460
Bme1390I	CCNGG	4 cut(s)	50, 51, 86, 157
Bme18I	GGWCC	2 cut(s)	159, 249
BmeT110I	CYCGRG	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	159, 249
BmiI	GGNNCC	2 cut(s)	221, 262
BmrFI	CCNGG	4 cut(s)	50, 51, 86, 157
BpiI	GAAGAC	3 cut(s)	17, 82, 368
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	2 cut(s)	50, 51
BsaHI	GRCGYC	1 cut(s)	220
BsaJI	CCNNGG	5 cut(s)	49, 84, 366, 423, 438
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 56, 171, 246, 328
Bse21I	CCTNAGG	1 cut(s)	453
BseBI	CCWGG	2 cut(s)	86, 157
BseDI	CCNNGG	5 cut(s)	49, 84, 366, 423, 438
BseGI	GGATG	2 cut(s)	69, 376
BseLI	CCNNNNNNNGG	5 cut(s)	55, 56, 171, 246, 328
BseXI	GCAGC	4 cut(s)	184, 304, 430, 433
BshFI	GGCC	1 cut(s)	458
BshNI	GGYRCC	2 cut(s)	219, 260
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	50, 172
BslI	CCNNNNNNNGG	5 cut(s)	55, 56, 171, 246, 328
BsnI	GGCC	1 cut(s)	458
BsoBI	CYCGRG	1 cut(s)	49
BspACI	CCGC	6 cut(s)	33, 73, 133, 162, 329, 459
BspANI	GGCC	1 cut(s)	458
BspLI	GGNNCC	2 cut(s)	221, 262
BspQI	GCTCTTC	1 cut(s)	339
BspT107I	GGYRCC	2 cut(s)	219, 260
BsrBI	CCGCTC	1 cut(s)	75
BssECI	CCNNGG	5 cut(s)	49, 84, 366, 423, 438
BssNI	GRCGYC	1 cut(s)	220
BssT1I	CCWWGG	3 cut(s)	366, 423, 438
Bst2UI	CCWGG	2 cut(s)	86, 157
Bst6I	CTCTTC	3 cut(s)	101, 209, 339
BstACI	GRCGYC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	453
BstENI	CCTNNNNNAGG	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	69, 376
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 148, 326, 455
BstNI	CCWGG	2 cut(s)	86, 157
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	4 cut(s)	48, 49, 84, 155
BstV1I	GCAGC	4 cut(s)	184, 304, 430, 433
BstV2I	GAAGAC	3 cut(s)	17, 82, 368
Bsu36I	CCTNAGG	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	458
BtsCI	GGATG	2 cut(s)	69, 376
CfoI	GCGC	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	159, 249
Cfr9I	CCCGGG	1 cut(s)	49
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	121, 169
CviAII	CATG	2 cut(s)	166, 433
CviJI	RGCY	8 cut(s)	142, 151, 238, 301, 332, 443, 458, 466
CviKI_1	RGCY	8 cut(s)	142, 151, 238, 301, 332, 443, 458, 466
CviQI	GTAC	2 cut(s)	121, 169
DdeI	CTNAG	1 cut(s)	453
DinI	GGCGCC	1 cut(s)	221
Eam1104I	CTCTTC	3 cut(s)	101, 209, 339
EarI	CTCTTC	3 cut(s)	101, 209, 339
Eco130I	CCWWGG	3 cut(s)	366, 423, 438
Eco47I	GGWCC	2 cut(s)	159, 249
Eco57I	CTGAAG	1 cut(s)	29
Eco81I	CCTNAGG	1 cut(s)	453
Eco88I	CYCGRG	1 cut(s)	49
EcoNI	CCTNNNNNAGG	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	84, 155
EcoT14I	CCWWGG	3 cut(s)	366, 423, 438
EgeI	GGCGCC	1 cut(s)	221
EheI	GGCGCC	1 cut(s)	221
ErhI	CCWWGG	3 cut(s)	366, 423, 438
FaeI	CATG	2 cut(s)	169, 436
FaiI	YATR	2 cut(s)	167, 434
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	2 cut(s)	165, 432
Fnu4HI	GCNGC	7 cut(s)	34, 198, 318, 330, 444, 447, 459
FokI	GGATG	2 cut(s)	56, 383
Fsp4HI	GCNGC	7 cut(s)	34, 198, 318, 330, 444, 447, 459
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	7 cut(s)	34, 198, 318, 330, 444, 447, 459
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	458
HapII	CCGG	2 cut(s)	50, 172
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	1 cut(s)	222
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	2 cut(s)	169, 436
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HinfI	GANTC	4 cut(s)	60, 66, 80, 203
HpaII	CCGG	2 cut(s)	50, 172
HphI	GGTGA	2 cut(s)	145, 394
Hpy188I	TCNGA	5 cut(s)	9, 65, 79, 394, 470
Hpy188III	TCNNGA	3 cut(s)	280, 311, 338
HpyAV	CCTTC	4 cut(s)	153, 181, 282, 373
HpyCH4V	TGCA	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 148, 326, 455
HpyF3I	CTNAG	1 cut(s)	453
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	2 cut(s)	169, 436
HspAI	GCGC	1 cut(s)	220
KasI	GGCGCC	1 cut(s)	219
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	2 cut(s)	80, 454
LpnPI	CCDG	7 cut(s)	63, 71, 98, 142, 169, 185, 293
Lsp1109I	GCAGC	4 cut(s)	184, 304, 430, 433
MaeIII	GTNAC	1 cut(s)	311
MbiI	CCGCTC	1 cut(s)	75
MboII	GAAGA	9 cut(s)	22, 82, 88, 223, 226, 326, 373, 388, 397
MluCI	AATT	3 cut(s)	103, 342, 395
Mly113I	GGCGCC	1 cut(s)	220
MnlI	CCTC	8 cut(s)	104, 111, 146, 210, 240, 319, 345, 464
MseI	TTAA	2 cut(s)	345, 357
MspA1I	CMGCKG	1 cut(s)	33
MspI	CCGG	2 cut(s)	50, 172
MspR9I	CCNGG	4 cut(s)	50, 51, 86, 157
MvaI	CCWGG	2 cut(s)	86, 157
MwoI	GCNNNNNNNGC	4 cut(s)	30, 148, 326, 455
NarI	GGCGCC	1 cut(s)	220
NciI	CCSGG	2 cut(s)	50, 51
NlaIII	CATG	2 cut(s)	169, 436
NlaIV	GGNNCC	2 cut(s)	221, 262
NmuCI	GTSAC	1 cut(s)	311
NspI	RCATGY	1 cut(s)	436
PciSI	GCTCTTC	1 cut(s)	339
PfeI	GAWTC	4 cut(s)	60, 66, 80, 203
PkrI	GCNGC	7 cut(s)	35, 199, 319, 331, 445, 448, 460
PluTI	GGCGCC	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	84, 155
PspGI	CCWGG	2 cut(s)	84, 155
PspN4I	GGNNCC	2 cut(s)	221, 262
PspPI	GGNCC	2 cut(s)	159, 249
RsaI	GTAC	2 cut(s)	122, 170
RsaNI	GTAC	2 cut(s)	121, 169
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	2 cut(s)	345, 357
SatI	GCNGC	7 cut(s)	34, 198, 318, 330, 444, 447, 459
Sau96I	GGNCC	2 cut(s)	159, 249
ScrFI	CCNGG	4 cut(s)	50, 51, 86, 157
SetI	ASST	9 cut(s)	90, 122, 153, 158, 251, 384, 417, 468, 475
SfoI	GGCGCC	1 cut(s)	221
SinI	GGWCC	2 cut(s)	159, 249
SmaI	CCCGGG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	3 cut(s)	103, 342, 395
SsiI	CCGC	6 cut(s)	33, 73, 133, 162, 329, 459
SspDI	GGCGCC	1 cut(s)	219
StyD4I	CCNGG	4 cut(s)	48, 49, 84, 155
StyI	CCWWGG	3 cut(s)	366, 423, 438
TaqI	TCGA	2 cut(s)	227, 245
TasI	AATT	3 cut(s)	103, 342, 395
TauI	GCSGC	3 cut(s)	36, 332, 461
TfiI	GAWTC	4 cut(s)	60, 66, 80, 203
Tru1I	TTAA	2 cut(s)	345, 357
Tru9I	TTAA	2 cut(s)	345, 357
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	4 cut(s)	197, 317, 443, 446
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	1 cut(s)	58
TspGWI	ACGGA	1 cut(s)	29
TspMI	CCCGGG	1 cut(s)	49
VpaK11BI	GGWCC	2 cut(s)	159, 249
XagI	CCTNNNNNAGG	1 cut(s)	244
XceI	RCATGY	1 cut(s)	436
XmaI	CCCGGG	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.