Rw7G015360

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000904
Physical Location & Seq
Forward (+)
15445680 .. 15447637
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G015360.1

Sequence Viewer

Length: 492 bp
ATGGTTCTCAAGACTGAGCTTTGCCGCTTCAGTGGCGCCAAGATCTACCCTGGTAGAGGCATCAGATTCATCCGCTCCGATTCTCAGGTTTTCCTGTTCGTGAATTCCAAGTGCAAGAGGTACTTCCACAACCGCCTCAAGCCGTCCAAGATCACATGGACTGCCATGTTCAGGAAGCAGCACAAGAAGGACTCTGCTCAAGAATCTGTGAAGAAGAAGCGCCGTGCCACCAAGAAGCCTTACTCAAGGTCCATTGTTGGTGCCACTTTGGAGGTCATCCAGAAGAGGAGGACCGAGAAGCCTGAGGTCCGTGACGCTGCTCGCGAGGCCGCTCTCCGTGAGATTAAGGAGAGAATCAAGAAGACCAAGGATGAGAAGAAGGCAAAGAAGGCAGAAATCACAGCCAAGTCAAGCAAGCCTACCAAGGGTAATCTGTCCAAGGCTGCAGCCCCCAAGGGCCCCAAGCTTGGTGGTGGAGGTGGAAAGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000027 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0023052 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048438 GO:0048467 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0070887 GO:0070925 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0090567 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902626 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L24e

Protein Analysis

163

Amino Acids

18.5

Weight (kDa)

10.86

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L24e PF01246 3 - 67 6.3e-28 Ribosomal protein L24e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 35, 260
AccBSI CCGCTC 2 cut(s) 75, 332
AccII CGCG 1 cut(s) 324
AciI CCGC 4 cut(s) 25, 73, 133, 330
AcsI RAATTY 1 cut(s) 103
AcuI CTGAAG 1 cut(s) 13
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 4 cut(s) 56, 171, 425, 467
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 2 cut(s) 19, 466
AluI AGCT 2 cut(s) 19, 466
AoxI GGCC 2 cut(s) 327, 457
ApaI GGGCCC 1 cut(s) 461
ApeKI GCWGC 4 cut(s) 178, 317, 443, 446
ApoI RAATTY 1 cut(s) 103
AspLEI GCGC 2 cut(s) 38, 222
AspS9I GGNCC 5 cut(s) 249, 291, 307, 457, 458
AvaII GGWCC 3 cut(s) 249, 291, 307
AxyI CCTNAGG 1 cut(s) 303
BaeGI GKGCMC 1 cut(s) 461
BanI GGYRCC 2 cut(s) 35, 260
BanII GRGCYC 1 cut(s) 461
BbsI GAAGAC 1 cut(s) 368
BbvI GCAGC 4 cut(s) 190, 304, 430, 458
BceAI ACGGC 2 cut(s) 127, 207
BciT130I CCWGG 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 444
BfoI RGCGCY 2 cut(s) 39, 223
BglII AGATCT 1 cut(s) 42
BisI GCNGC 6 cut(s) 25, 179, 318, 330, 444, 447
BlsI GCNGC 6 cut(s) 26, 180, 319, 331, 445, 448
Bme1390I CCNGG 1 cut(s) 51
Bme18I GGWCC 3 cut(s) 249, 291, 307
BmgT120I GGNCC 5 cut(s) 249, 291, 307, 457, 458
BmiI GGNNCC 4 cut(s) 37, 262, 459, 460
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 69
BpiI GAAGAC 1 cut(s) 368
BpuEI CTTGAG 3 cut(s) 122, 183, 229
BsaHI GRCGYC 1 cut(s) 36
BsaJI CCNNGG 5 cut(s) 49, 366, 423, 438, 453
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 171, 425, 467
Bse21I CCTNAGG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 5 cut(s) 49, 366, 423, 438, 453
BseGI GGATG 3 cut(s) 69, 276, 376
BseLI CCNNNNNNNGG 4 cut(s) 56, 171, 425, 467
BseMII CTCAG 3 cut(s) 6, 98, 294
BseRI GAGGAG 1 cut(s) 301
BseSI GKGCMC 1 cut(s) 461
BseXI GCAGC 4 cut(s) 190, 304, 430, 458
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 2 cut(s) 329, 459
BshNI GGYRCC 2 cut(s) 35, 260
BslI CCNNNNNNNGG 4 cut(s) 56, 171, 425, 467
BsnI GGCC 2 cut(s) 329, 459
Bsp120I GGGCCC 1 cut(s) 457
Bsp1286I GDGCHC 1 cut(s) 461
Bsp143I GATC 2 cut(s) 42, 150
Bsp68I TCGCGA 1 cut(s) 324
BspACI CCGC 4 cut(s) 25, 73, 133, 330
BspANI GGCC 2 cut(s) 329, 459
BspCNI CTCAG 3 cut(s) 7, 97, 295
BspFNI CGCG 1 cut(s) 324
BspLI GGNNCC 4 cut(s) 37, 262, 459, 460
BspMAI CTGCAG 1 cut(s) 448
BspT107I GGYRCC 2 cut(s) 35, 260
BsrBI CCGCTC 2 cut(s) 75, 332
BssECI CCNNGG 5 cut(s) 49, 366, 423, 438, 453
BssMI GATC 2 cut(s) 42, 150
BssNI GRCGYC 1 cut(s) 36
BssT1I CCWWGG 4 cut(s) 366, 423, 438, 453
Bst2UI CCWGG 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 278
BstACI GRCGYC 1 cut(s) 36
BstC8I GCNNGC 2 cut(s) 322, 416
BstDEI CTNAG 3 cut(s) 15, 84, 303
BstENI CCTNNNNNAGG 1 cut(s) 54
BstF5I GGATG 3 cut(s) 69, 276, 376
BstFNI CGCG 1 cut(s) 324
BstH2I RGCGCY 2 cut(s) 39, 223
BstHHI GCGC 2 cut(s) 38, 222
BstKTI GATC 2 cut(s) 45, 153
BstMBI GATC 2 cut(s) 42, 150
BstMWI GCNNNNNNNGC 3 cut(s) 33, 326, 389
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 49
BstSFI CTRYAG 1 cut(s) 444
BstSLI GKGCMC 1 cut(s) 461
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 4 cut(s) 190, 304, 430, 458
BstV2I GAAGAC 1 cut(s) 368
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
Bsu36I CCTNAGG 1 cut(s) 303
BsuRI GGCC 2 cut(s) 329, 459
BtsCI GGATG 3 cut(s) 69, 276, 376
BtsIMutI CAGTG 1 cut(s) 37
BtuMI TCGCGA 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 322, 416
CfoI GCGC 2 cut(s) 38, 222
Cfr13I GGNCC 5 cut(s) 249, 291, 307, 457, 458
CseI GACGC 1 cut(s) 323
Csp6I GTAC 1 cut(s) 121
CspCI CAANNNNNGTGG 2 cut(s) 451, 486
CviAII CATG 2 cut(s) 156, 166
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 3 cut(s) 15, 84, 303
DinI GGCGCC 1 cut(s) 37
DpnI GATC 2 cut(s) 44, 152
DpnII GATC 2 cut(s) 42, 150
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Eco130I CCWWGG 4 cut(s) 366, 423, 438, 453
Eco24I GRGCYC 1 cut(s) 461
Eco47I GGWCC 3 cut(s) 249, 291, 307
Eco57I CTGAAG 1 cut(s) 13
Eco81I CCTNAGG 1 cut(s) 303
EcoNI CCTNNNNNAGG 1 cut(s) 54
EcoO109I RGGNCCY 2 cut(s) 457, 458
EcoRI GAATTC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 4 cut(s) 366, 423, 438, 453
EcoT38I GRGCYC 1 cut(s) 461
EgeI GGCGCC 1 cut(s) 37
EheI GGCGCC 1 cut(s) 37
ErhI CCWWGG 4 cut(s) 366, 423, 438, 453
FaeI CATG 2 cut(s) 159, 169
FaiI YATR 2 cut(s) 157, 167
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 2 cut(s) 155, 165
Fnu4HI GCNGC 6 cut(s) 25, 179, 318, 330, 444, 447
FokI GGATG 3 cut(s) 56, 263, 383
FriOI GRGCYC 1 cut(s) 461
Fsp4HI GCNGC 6 cut(s) 25, 179, 318, 330, 444, 447
GlaI GCGC 2 cut(s) 37, 221
GluI GCNGC 6 cut(s) 25, 179, 318, 330, 444, 447
HaeII RGCGCY 2 cut(s) 39, 223
HaeIII GGCC 2 cut(s) 329, 459
HgaI GACGC 1 cut(s) 323
HhaI GCGC 2 cut(s) 38, 222
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 2 cut(s) 159, 169
Hin6I GCGC 2 cut(s) 36, 220
HinP1I GCGC 2 cut(s) 36, 220
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 5 cut(s) 66, 80, 191, 203, 354
Hpy188I TCNGA 2 cut(s) 65, 79
Hpy188III TCNNGA 7 cut(s) 10, 100, 172, 200, 280, 323, 358
HpyAV CCTTC 3 cut(s) 181, 373, 382
HpyCH4V TGCA 2 cut(s) 114, 446
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 326, 389
HpyF3I CTNAG 3 cut(s) 15, 84, 303
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 2 cut(s) 159, 169
HspAI GCGC 2 cut(s) 36, 220
KasI GGCGCC 1 cut(s) 35
Kzo9I GATC 2 cut(s) 42, 150
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 7 cut(s) 36, 63, 71, 107, 157, 293, 315
Lsp1109I GCAGC 4 cut(s) 190, 304, 430, 458
LweI GCATC 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 311
MalI GATC 2 cut(s) 44, 152
MbiI CCGCTC 2 cut(s) 75, 332
MboI GATC 2 cut(s) 42, 150
MboII GAAGA 5 cut(s) 223, 226, 295, 373, 388
MflI RGATCY 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 461
MluCI AATT 1 cut(s) 103
Mly113I GGCGCC 1 cut(s) 36
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 9 cut(s) 50, 111, 146, 265, 279, 282, 298, 319, 470
MseI TTAA 1 cut(s) 345
MspR9I CCNGG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 51
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 3 cut(s) 33, 326, 389
NarI GGCGCC 1 cut(s) 36
NdeII GATC 2 cut(s) 42, 150
NlaIII CATG 2 cut(s) 159, 169
NlaIV GGNNCC 4 cut(s) 37, 262, 459, 460
NmuCI GTSAC 1 cut(s) 311
NruI TCGCGA 1 cut(s) 324
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PfeI GAWTC 4 cut(s) 66, 80, 203, 354
PkrI GCNGC 6 cut(s) 26, 180, 319, 331, 445, 448
PleI GAGTC 1 cut(s) 185
PluTI GGCGCC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 4 cut(s) 37, 262, 459, 460
PspOMI GGGCCC 1 cut(s) 457
PspPI GGNCC 5 cut(s) 249, 291, 307, 457, 458
PstI CTGCAG 1 cut(s) 448
PsuI RGATCY 1 cut(s) 42
RruI TCGCGA 1 cut(s) 324
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 6 cut(s) 25, 179, 318, 330, 444, 447
Sau3AI GATC 2 cut(s) 42, 150
Sau96I GGNCC 5 cut(s) 249, 291, 307, 457, 458
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 1 cut(s) 461
SetI ASST 8 cut(s) 21, 90, 122, 251, 276, 309, 468, 481
SfaNI GCATC 1 cut(s) 69
SfcI CTRYAG 1 cut(s) 444
SfoI GGCGCC 1 cut(s) 37
SinI GGWCC 3 cut(s) 249, 291, 307
SmlI CTYRAG 4 cut(s) 8, 137, 198, 244
SmoI CTYRAG 4 cut(s) 8, 137, 198, 244
Sse9I AATT 1 cut(s) 103
SsiI CCGC 4 cut(s) 25, 73, 133, 330
SspDI GGCGCC 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 4 cut(s) 366, 423, 438, 453
TaqII GACCGA 1 cut(s) 308
TasI AATT 1 cut(s) 103
TauI GCSGC 2 cut(s) 27, 332
TfiI GAWTC 4 cut(s) 66, 80, 203, 354
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 4 cut(s) 178, 317, 443, 446
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 1 cut(s) 58
TspGWI ACGGA 2 cut(s) 299, 326
TspRI CASTG 1 cut(s) 37
VpaK11BI GGWCC 3 cut(s) 249, 291, 307
XagI CCTNNNNNAGG 1 cut(s) 54
XapI RAATTY 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.