AT2G36620

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000904
Physical Location & Seq
Reverse (-)
15350268 .. 15352013
1746 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36620.1

Sequence Viewer

Length: 495 bp
ATGGTTCTCAAGACTGAGCTTTGCCGATTCAGTGGCCAGAAAATTTACCCTGGTAGAGGGATCAGATTTATCCGATCGGACTCTCAGGTGTTTTTGTTTCTCAACTCCAAATGTAAGAGGTATTTCCACAACAAGTTGAAGCCATCTAAGCTTTGCTGGACTGCTATGTACCGAAAGCAGCACAAGAAGGACGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCAACTAAGAAGCCTTACTCAAGGTCGATTGTCGGTGCTACTTTGGAGGTTATTCAGAAGAAGCGAGCAGAGAAGCCTGAAGTTCGTGATGCCGCTAGAGAAGCTGCCCTACGTGAGATCAAGGAGAGAATCAAGAAGACCAAGGACGAGAAGAAGGCAAAGAAGGTCGAGTATGCATCAAAGCAACAGAAGTCACAAGTGAAGGGAAATATCCCCAAGAGTGCTGCACCCAAGGCTGCTAAGATGGGTGGTGGTGGAGGCAGACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000027 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0023052 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048438 GO:0048467 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065003 GO:0065007 GO:0070013 GO:0070887 GO:0070925 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0090567 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902626 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L24e

Protein Analysis

164

Amino Acids

18.85

Weight (kDa)

10.7

Isoelectric Point (pI)

56.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L24e PF01246 3 - 67 2.8e-28 Ribosomal protein L24e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 318
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 1 cut(s) 42
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 56
AgsI TTSAA 1 cut(s) 139
AjiI CACGTC 1 cut(s) 224
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 3 cut(s) 19, 151, 329
AluI AGCT 3 cut(s) 19, 151, 329
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 1 cut(s) 68
AoxI GGCC 1 cut(s) 34
ApeKI GCWGC 5 cut(s) 178, 194, 329, 449, 461
ApoI RAATTY 1 cut(s) 42
BalI TGGCCA 1 cut(s) 36
BarI GAAGNNNNNNTAC 2 cut(s) 318, 350
BbsI GAAGAC 1 cut(s) 368
BbvI GCAGC 5 cut(s) 190, 206, 316, 436, 448
BccI CCATC 2 cut(s) 151, 463
BciT130I CCWGG 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 1 cut(s) 321
BisI GCNGC 6 cut(s) 179, 195, 318, 330, 450, 462
BlsI GCNGC 6 cut(s) 180, 196, 319, 331, 451, 463
Bme1390I CCNGG 1 cut(s) 51
BmgBI CACGTC 1 cut(s) 224
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 2 cut(s) 304, 410
BpiI GAAGAC 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 229
BsaAI YACGTR 1 cut(s) 338
BsaJI CCNNGG 3 cut(s) 49, 366, 456
Bsc4I CCNNNNNNNGG 1 cut(s) 56
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 3 cut(s) 49, 366, 456
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMII CTCAG 2 cut(s) 6, 98
BseXI GCAGC 5 cut(s) 190, 206, 316, 436, 448
BsgI GTGCAG 1 cut(s) 435
Bsh1285I CGRYCG 1 cut(s) 77
BshFI GGCC 1 cut(s) 36
BsiEI CGRYCG 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 214
BsmBI CGTCTC 1 cut(s) 214
BsnI GGCC 1 cut(s) 36
Bsp143I GATC 3 cut(s) 60, 74, 342
BspACI CCGC 1 cut(s) 318
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 2 cut(s) 7, 97
BspPI GGATC 1 cut(s) 68
BssECI CCNNGG 3 cut(s) 49, 366, 456
BssMI GATC 3 cut(s) 60, 74, 342
BssT1I CCWWGG 2 cut(s) 366, 456
Bst2UI CCWGG 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 206
BstBAI YACGTR 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 5 cut(s) 15, 84, 147, 231, 465
BstENI CCTNNNNNAGG 1 cut(s) 54
BstKTI GATC 3 cut(s) 63, 77, 345
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 3 cut(s) 60, 74, 342
BstMCI CGRYCG 1 cut(s) 77
BstMWI GCNNNNNNNGC 4 cut(s) 148, 203, 326, 458
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 49
BstV1I GCAGC 5 cut(s) 190, 206, 316, 436, 448
BstV2I GAAGAC 1 cut(s) 368
BsuRI GGCC 1 cut(s) 36
BtrI CACGTC 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 291
CseI GACGC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 169
CviJI RGCY 9 cut(s) 19, 36, 142, 151, 206, 238, 301, 329, 461
CviKI_1 RGCY 9 cut(s) 19, 36, 142, 151, 206, 238, 301, 329, 461
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 5 cut(s) 15, 84, 147, 231, 465
DpnI GATC 3 cut(s) 62, 76, 344
DpnII GATC 3 cut(s) 60, 74, 342
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco130I CCWWGG 2 cut(s) 366, 456
Eco57I CTGAAG 1 cut(s) 324
EcoNI CCTNNNNNAGG 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 2 cut(s) 366, 456
EcoT22I ATGCAT 1 cut(s) 403
ErhI CCWWGG 2 cut(s) 366, 456
Esp3I CGTCTC 1 cut(s) 214
FaiI YATR 2 cut(s) 167, 399
Fnu4HI GCNGC 6 cut(s) 179, 195, 318, 330, 450, 462
Fsp4HI GCNGC 6 cut(s) 179, 195, 318, 330, 450, 462
FspBI CTAG 1 cut(s) 321
GluI GCNGC 6 cut(s) 179, 195, 318, 330, 450, 462
HaeIII GGCC 1 cut(s) 36
HgaI GACGC 1 cut(s) 200
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 3 cut(s) 27, 80, 354
Hpy188I TCNGA 4 cut(s) 65, 74, 79, 282
Hpy188III TCNNGA 3 cut(s) 10, 311, 358
HpyAV CCTTC 5 cut(s) 181, 210, 373, 382, 421
HpyCH4IV ACGT 3 cut(s) 223, 337, 490
HpyCH4V TGCA 3 cut(s) 227, 401, 452
HpyF10VI GCNNNNNNNGC 4 cut(s) 148, 203, 326, 458
HpyF3I CTNAG 5 cut(s) 15, 84, 147, 231, 465
HpySE526I ACGT 3 cut(s) 223, 337, 490
Kzo9I GATC 3 cut(s) 60, 74, 342
LpnPI CCDG 6 cut(s) 36, 50, 63, 71, 142, 315
Lsp1109I GCAGC 5 cut(s) 190, 206, 316, 436, 448
LweI GCATC 2 cut(s) 304, 410
MaeI CTAG 1 cut(s) 321
MaeII ACGT 3 cut(s) 223, 337, 490
MaeIII GTNAC 1 cut(s) 417
MalI GATC 3 cut(s) 62, 76, 344
MboI GATC 3 cut(s) 60, 74, 342
MboII GAAGA 4 cut(s) 223, 295, 373, 388
MlsI TGGCCA 1 cut(s) 36
MluCI AATT 1 cut(s) 42
MluNI TGGCCA 1 cut(s) 36
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 5 cut(s) 50, 111, 196, 265, 476
Mox20I TGGCCA 1 cut(s) 36
Mph1103I ATGCAT 1 cut(s) 403
MscI TGGCCA 1 cut(s) 36
Msp20I TGGCCA 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 4 cut(s) 148, 203, 326, 458
NdeII GATC 3 cut(s) 60, 74, 342
NmuCI GTSAC 1 cut(s) 417
NsiI ATGCAT 1 cut(s) 403
PfeI GAWTC 2 cut(s) 27, 354
PkrI GCNGC 6 cut(s) 180, 196, 319, 331, 451, 463
Ple19I CGATCG 1 cut(s) 77
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
Ppu21I YACGTR 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PvuI CGATCG 1 cut(s) 77
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SatI GCNGC 6 cut(s) 179, 195, 318, 330, 450, 462
Sau3AI GATC 3 cut(s) 60, 74, 342
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 51
SfaNI GCATC 2 cut(s) 304, 410
SmlI CTYRAG 2 cut(s) 8, 244
SmoI CTYRAG 2 cut(s) 8, 244
Sse9I AATT 1 cut(s) 42
SsiI CCGC 1 cut(s) 318
SspMI CTAG 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 2 cut(s) 366, 456
TaiI ACGT 3 cut(s) 226, 340, 493
TaqI TCGA 2 cut(s) 251, 393
TasI AATT 1 cut(s) 42
TauI GCSGC 1 cut(s) 320
TfiI GAWTC 2 cut(s) 27, 354
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 1 cut(s) 417
TseI GCWGC 5 cut(s) 178, 194, 329, 449, 461
Tsp45I GTSAC 1 cut(s) 417
TspRI CASTG 1 cut(s) 37
XagI CCTNNNNNAGG 1 cut(s) 54
XapI RAATTY 1 cut(s) 42
XspI CTAG 1 cut(s) 321
Zsp2I ATGCAT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.