Rh3CG186500

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000904
Physical Location & Seq
Forward (+)
16377366 .. 16380009
2644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG186500.1

Sequence Viewer

Length: 471 bp
ATGCATTTTAGTTTACTACTTCTAGTTGTTAACTGTTTTTTATGTTGGATTGCTAGGACCGAACTCTGTAGGTTCAGTGGGGCGAAGATCTACCCTGGTAGAGGCATCAGATTTATCCGGTCTGATTCTCAGGTGTTCCTCTTTGCCAATTCAAAATGCAAGAGGTACTTCCACAATCGGTTGAAGCCATCTAAGATTACCTGGACAGCCATGTACAGGAAGCAACACAAGAAGGATATTGCTCAAGAATCTGTTAAGAAGAGGAGACGTGCCAATAAGAAGCCTTATTCAAGGTCAATAGTTGGTGCCACCCTGGAGGTTATCCAGAAGAGGAGGACCGAAAAGCCTGAAGTTCGTGATGCTGCTCGTGAGGCCGCACTCCGGTTTGTGCTCTTATCTTTTACTTGTGGATTCACTTATTTCGCATTTCCAACTTTTAGGTTTTTCGTGTTCAGCACTTTGCTTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L24e

Protein Analysis

156

Amino Acids

18.41

Weight (kDa)

10.75

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L24e PF01246 19 - 82 1.9e-28 Ribosomal protein L24e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 305
AciI CCGC 1 cut(s) 375
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 2 cut(s) 167, 215
AfiI CCNNNNNNNGG 3 cut(s) 101, 216, 381
AgsI TTSAA 3 cut(s) 153, 184, 291
AjiI CACGTC 1 cut(s) 269
AjnI CCWGG 3 cut(s) 94, 200, 312
AluBI AGCT 1 cut(s) 468
AluI AGCT 1 cut(s) 468
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 1 cut(s) 259
AoxI GGCC 1 cut(s) 372
ApeKI GCWGC 1 cut(s) 362
AspS9I GGNCC 2 cut(s) 57, 336
AvaII GGWCC 2 cut(s) 57, 336
BanI GGYRCC 1 cut(s) 305
BauI CACGAG 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 1 cut(s) 349
BccI CCATC 1 cut(s) 196
BciT130I CCWGG 3 cut(s) 96, 202, 314
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 2 cut(s) 23, 54
BfmI CTRYAG 1 cut(s) 67
BglII AGATCT 1 cut(s) 87
BisI GCNGC 2 cut(s) 363, 375
BlpI GCTNAGC 1 cut(s) 464
BlsI GCNGC 2 cut(s) 364, 376
Bme1390I CCNGG 3 cut(s) 96, 202, 314
Bme18I GGWCC 2 cut(s) 57, 336
BmgBI CACGTC 1 cut(s) 269
BmgT120I GGNCC 2 cut(s) 57, 336
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 3 cut(s) 96, 202, 314
BmsI GCATC 2 cut(s) 114, 349
BpmI CTGGAG 1 cut(s) 335
Bpu1102I GCTNAGC 1 cut(s) 464
BpuEI CTTGAG 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 94, 312
BsaWI WCCGGW 2 cut(s) 117, 381
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 216, 381
BseBI CCWGG 3 cut(s) 96, 202, 314
BseDI CCNNGG 2 cut(s) 94, 312
BseLI CCNNNNNNNGG 3 cut(s) 101, 216, 381
BseMII CTCAG 1 cut(s) 143
BseRI GAGGAG 2 cut(s) 277, 346
BseXI GCAGC 1 cut(s) 349
BshFI GGCC 1 cut(s) 374
BshNI GGYRCC 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 393
BsiSI CCGG 2 cut(s) 118, 382
BslI CCNNNNNNNGG 3 cut(s) 101, 216, 381
BsmAI GTCTC 1 cut(s) 259
BsmBI CGTCTC 1 cut(s) 259
BsnI GGCC 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 393
Bsp1407I TGTACA 1 cut(s) 213
Bsp143I GATC 1 cut(s) 87
Bsp1720I GCTNAGC 1 cut(s) 464
BspACI CCGC 1 cut(s) 375
BspANI GGCC 1 cut(s) 374
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 307
BspT107I GGYRCC 1 cut(s) 305
BsrGI TGTACA 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 94, 312
BssMI GATC 1 cut(s) 87
BssSI CACGAG 1 cut(s) 366
Bst2BI CACGAG 1 cut(s) 366
Bst2UI CCWGG 3 cut(s) 96, 202, 314
Bst4CI ACNGT 1 cut(s) 35
Bst6I CTCTTC 2 cut(s) 254, 323
BstAUI TGTACA 1 cut(s) 213
BstDEI CTNAG 3 cut(s) 129, 192, 464
BstENI CCTNNNNNAGG 1 cut(s) 99
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNI CCWGG 3 cut(s) 96, 202, 314
BstSCI CCNGG 3 cut(s) 94, 200, 312
BstSFI CTRYAG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 349
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BsuRI GGCC 1 cut(s) 374
BtrI CACGTC 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 57, 336
Csp6I GTAC 2 cut(s) 166, 214
CviAII CATG 1 cut(s) 211
CviJI RGCY 6 cut(s) 187, 209, 283, 346, 374, 468
CviKI_1 RGCY 6 cut(s) 187, 209, 283, 346, 374, 468
CviQI GTAC 2 cut(s) 166, 214
DdeI CTNAG 3 cut(s) 129, 192, 464
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eam1104I CTCTTC 2 cut(s) 254, 323
EarI CTCTTC 2 cut(s) 254, 323
Eco47I GGWCC 2 cut(s) 57, 336
Eco57I CTGAAG 1 cut(s) 369
EcoNI CCTNNNNNAGG 1 cut(s) 99
EcoRII CCWGG 3 cut(s) 94, 200, 312
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 259
FaeI CATG 1 cut(s) 214
FaiI YATR 2 cut(s) 43, 212
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 1 cut(s) 210
Fnu4HI GCNGC 2 cut(s) 363, 375
Fsp4HI GCNGC 2 cut(s) 363, 375
FspBI CTAG 2 cut(s) 23, 54
GluI GCNGC 2 cut(s) 363, 375
GsuI CTGGAG 1 cut(s) 335
HaeIII GGCC 1 cut(s) 374
HapII CCGG 2 cut(s) 118, 382
Hin1II CATG 1 cut(s) 214
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 3 cut(s) 125, 248, 411
HpaI GTTAAC 1 cut(s) 31
HpaII CCGG 2 cut(s) 118, 382
Hpy166II GTNNAC 2 cut(s) 14, 31
Hpy188I TCNGA 2 cut(s) 110, 124
Hpy188III TCNNGA 4 cut(s) 245, 325, 356, 368
Hpy8I GTNNAC 2 cut(s) 14, 31
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 2 cut(s) 4, 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 3 cut(s) 129, 192, 464
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 1 cut(s) 214
KspAI GTTAAC 1 cut(s) 31
Kzo9I GATC 1 cut(s) 87
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 2 cut(s) 114, 349
MaeI CTAG 2 cut(s) 23, 54
MaeII ACGT 1 cut(s) 268
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 3 cut(s) 97, 271, 340
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 393
MluCI AATT 1 cut(s) 148
MmeI TCCRAC 2 cut(s) 26, 455
MnlI CCTC 8 cut(s) 95, 149, 156, 255, 310, 324, 327, 364
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 30, 255
MspI CCGG 2 cut(s) 118, 382
MspR9I CCNGG 3 cut(s) 96, 202, 314
MvaI CCWGG 3 cut(s) 96, 202, 314
MwoI GCNNNNNNNGC 1 cut(s) 371
NdeII GATC 1 cut(s) 87
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 1 cut(s) 307
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 3 cut(s) 125, 248, 411
PkrI GCNGC 2 cut(s) 364, 376
Psp6I CCWGG 3 cut(s) 94, 200, 312
PspGI CCWGG 3 cut(s) 94, 200, 312
PspN4I GGNNCC 1 cut(s) 307
PspPI GGNCC 2 cut(s) 57, 336
PsuI RGATCY 1 cut(s) 87
RsaI GTAC 2 cut(s) 167, 215
RsaNI GTAC 2 cut(s) 166, 214
SaqAI TTAA 2 cut(s) 30, 255
SatI GCNGC 2 cut(s) 363, 375
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 2 cut(s) 57, 336
ScrFI CCNGG 3 cut(s) 96, 202, 314
SduI GDGCHC 1 cut(s) 393
SetI ASST 9 cut(s) 74, 135, 167, 203, 271, 296, 321, 443, 470
SfaNI GCATC 2 cut(s) 114, 349
SfcI CTRYAG 1 cut(s) 67
SinI GGWCC 2 cut(s) 57, 336
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
Sse9I AATT 1 cut(s) 148
SsiI CCGC 1 cut(s) 375
SspMI CTAG 2 cut(s) 23, 54
StyD4I CCNGG 3 cut(s) 94, 200, 312
TaaI ACNGT 1 cut(s) 35
TaiI ACGT 1 cut(s) 271
TaqII GACCGA 2 cut(s) 74, 353
TasI AATT 1 cut(s) 148
TatI WGTACW 1 cut(s) 213
TauI GCSGC 1 cut(s) 377
TfiI GAWTC 3 cut(s) 125, 248, 411
Tru1I TTAA 2 cut(s) 30, 255
Tru9I TTAA 2 cut(s) 30, 255
TscAI CASTG 1 cut(s) 82
TseI GCWGC 1 cut(s) 362
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 2 cut(s) 57, 336
XagI CCTNNNNNAGG 1 cut(s) 99
XspI CTAG 2 cut(s) 23, 54
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.