Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

1095123 .. 1096470

Gene Structure 1348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGTTCTCAAGACTGAGCTCTGCCGCTTCAGTGGCGCCAAGATCTACCCCGGTAGAGGCATCAGATTCATCCGCTCCGATTCTCAGGTTTTCCTGTTCCTGAATTCCAAGTGTAAGAGGTACTTCCACAACCGCCTCAAGCCCTCCAAGATCACATGGACTGCTATGTTCAGGAAGCAGCACAAGAAGGACTCTGCTCAAGAGTCTGTGAAGAAGAAGCGCCGCTCCACCAAGAAGCCTTACTCGAGGTCCATTGTCGGCGCCACTCTCGAGGTTATCCAGAAGAGGAGGACTGAGAAGCCTGAGGTCCGTGACGCCGCTCGCGAGGCCGCTCTCCGTGAGATTAAGGAGAGGATCAAGAAGACCAAAGATGAGAAAAAGGCAAAGAAAGCAGAGATTACAGCCAAGACGCACAAGACTACCAAGGGTAATATGCCCAAGGCTGCAGCAGCTCCCAAGGGTCCCAAGCTTGGTGGTGGAGGTGGAAAGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

165

Amino Acids

18.7

Weight (kDa)

10.86

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	3 - 67	4.3e-28	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	35, 260
AccBSI	CCGCTC	4 cut(s)	75, 225, 320, 332
AccII	CGCG	1 cut(s)	324
AciI	CCGC	6 cut(s)	25, 73, 133, 223, 318, 330
AclWI	GGATC	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	13
AcyI	GRCGYC	3 cut(s)	36, 261, 315
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	56, 470
AluBI	AGCT	3 cut(s)	19, 452, 469
AluI	AGCT	3 cut(s)	19, 452, 469
Alw21I	GWGCWC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	362
Ama87I	CYCGRG	2 cut(s)	244, 269
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	4 cut(s)	178, 443, 446, 449
ApoI	RAATTY	1 cut(s)	103
AspLEI	GCGC	3 cut(s)	38, 222, 263
AspS9I	GGNCC	3 cut(s)	249, 307, 461
AsuC2I	CCSGG	1 cut(s)	51
AvaI	CYCGRG	2 cut(s)	244, 269
AvaII	GGWCC	3 cut(s)	249, 307, 461
AxyI	CCTNAGG	1 cut(s)	303
BanI	GGYRCC	2 cut(s)	35, 260
BanII	GRGCYC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	4 cut(s)	190, 430, 458, 461
BcnI	CCSGG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	444
BfoI	RGCGCY	3 cut(s)	39, 223, 264
BglII	AGATCT	1 cut(s)	42
BisI	GCNGC	8 cut(s)	25, 179, 223, 318, 330, 444, 447, 450
BlsI	GCNGC	8 cut(s)	26, 180, 224, 319, 331, 445, 448, 451
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	3 cut(s)	249, 307, 461
BmeT110I	CYCGRG	2 cut(s)	244, 269
BmgT120I	GGNCC	3 cut(s)	249, 307, 461
BmiI	GGNNCC	4 cut(s)	37, 262, 462, 463
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	368
BpuEI	CTTGAG	2 cut(s)	122, 183
BpuMI	CCSGG	1 cut(s)	51
BsaHI	GRCGYC	3 cut(s)	36, 261, 315
BsaJI	CCNNGG	4 cut(s)	49, 423, 438, 456
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 470
Bse21I	CCTNAGG	1 cut(s)	303
BseDI	CCNNGG	4 cut(s)	49, 423, 438, 456
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	56, 470
BseMII	CTCAG	4 cut(s)	6, 98, 285, 294
BseRI	GAGGAG	1 cut(s)	301
BseXI	GCAGC	4 cut(s)	190, 430, 458, 461
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	2 cut(s)	35, 260
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	2 cut(s)	244, 269
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	2 cut(s)	56, 470
BsmFI	GGGAC	1 cut(s)	447
BsnI	GGCC	1 cut(s)	329
BsoBI	CYCGRG	2 cut(s)	244, 269
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	42, 150, 354
Bsp68I	TCGCGA	1 cut(s)	324
BspACI	CCGC	6 cut(s)	25, 73, 133, 223, 318, 330
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	4 cut(s)	7, 97, 286, 295
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	4 cut(s)	37, 262, 462, 463
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	1 cut(s)	362
BspT107I	GGYRCC	2 cut(s)	35, 260
BsrBI	CCGCTC	4 cut(s)	75, 225, 320, 332
BssECI	CCNNGG	4 cut(s)	49, 423, 438, 456
BssMI	GATC	3 cut(s)	42, 150, 354
BssNI	GRCGYC	3 cut(s)	36, 261, 315
BssT1I	CCWWGG	3 cut(s)	423, 438, 456
Bst6I	CTCTTC	1 cut(s)	278
BstACI	GRCGYC	3 cut(s)	36, 261, 315
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	4 cut(s)	15, 84, 294, 303
BstF5I	GGATG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	324
BstH2I	RGCGCY	3 cut(s)	39, 223, 264
BstHHI	GCGC	3 cut(s)	38, 222, 263
BstKTI	GATC	3 cut(s)	45, 153, 357
BstMBI	GATC	3 cut(s)	42, 150, 354
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 326, 389, 449
BstSCI	CCNGG	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	444
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	4 cut(s)	190, 430, 458, 461
BstV2I	GAAGAC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	37
BtuMI	TCGCGA	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	322
CfoI	GCGC	3 cut(s)	38, 222, 263
Cfr13I	GGNCC	3 cut(s)	249, 307, 461
CseI	GACGC	2 cut(s)	323, 418
Csp6I	GTAC	1 cut(s)	121
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	1 cut(s)	156
CviJI	RGCY	9 cut(s)	19, 142, 238, 301, 329, 404, 443, 452, 469
CviKI_1	RGCY	9 cut(s)	19, 142, 238, 301, 329, 404, 443, 452, 469
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	4 cut(s)	15, 84, 294, 303
DinI	GGCGCC	2 cut(s)	37, 262
DpnI	GATC	3 cut(s)	44, 152, 356
DpnII	GATC	3 cut(s)	42, 150, 354
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Ecl136II	GAGCTC	1 cut(s)	19
Eco130I	CCWWGG	3 cut(s)	423, 438, 456
Eco24I	GRGCYC	1 cut(s)	21
Eco47I	GGWCC	3 cut(s)	249, 307, 461
Eco53kI	GAGCTC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	13
Eco81I	CCTNAGG	1 cut(s)	303
Eco88I	CYCGRG	2 cut(s)	244, 269
EcoICRI	GAGCTC	1 cut(s)	19
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRI	GAATTC	1 cut(s)	103
EcoT14I	CCWWGG	3 cut(s)	423, 438, 456
EcoT38I	GRGCYC	1 cut(s)	21
EgeI	GGCGCC	2 cut(s)	37, 262
EheI	GGCGCC	2 cut(s)	37, 262
ErhI	CCWWGG	3 cut(s)	423, 438, 456
FaeI	CATG	1 cut(s)	159
FaiI	YATR	3 cut(s)	157, 167, 434
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	1 cut(s)	155
Fnu4HI	GCNGC	8 cut(s)	25, 179, 223, 318, 330, 444, 447, 450
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	8 cut(s)	25, 179, 223, 318, 330, 444, 447, 450
GlaI	GCGC	3 cut(s)	37, 221, 262
GluI	GCNGC	8 cut(s)	25, 179, 223, 318, 330, 444, 447, 450
HaeII	RGCGCY	3 cut(s)	39, 223, 264
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	2 cut(s)	323, 418
HhaI	GCGC	3 cut(s)	38, 222, 263
Hin1I	GRCGYC	3 cut(s)	36, 261, 315
Hin1II	CATG	1 cut(s)	159
Hin6I	GCGC	3 cut(s)	36, 220, 261
HinP1I	GCGC	3 cut(s)	36, 220, 261
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	4 cut(s)	66, 80, 191, 203
HpaII	CCGG	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	65, 79
Hpy188III	TCNNGA	8 cut(s)	10, 100, 172, 200, 269, 280, 323, 358
HpyAV	CCTTC	1 cut(s)	181
HpyCH4V	TGCA	1 cut(s)	446
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 326, 389, 449
HpyF3I	CTNAG	4 cut(s)	15, 84, 294, 303
Hsp92I	GRCGYC	3 cut(s)	36, 261, 315
Hsp92II	CATG	1 cut(s)	159
HspAI	GCGC	3 cut(s)	36, 220, 261
KasI	GGCGCC	2 cut(s)	35, 260
KflI	GGGWCCC	1 cut(s)	461
Kzo9I	GATC	3 cut(s)	42, 150, 354
LmnI	GCTCC	3 cut(s)	80, 230, 457
LpnPI	CCDG	7 cut(s)	64, 71, 107, 113, 157, 293, 315
Lsp1109I	GCAGC	4 cut(s)	190, 430, 458, 461
LweI	GCATC	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	3 cut(s)	44, 152, 356
MbiI	CCGCTC	4 cut(s)	75, 225, 320, 332
MboI	GATC	3 cut(s)	42, 150, 354
MboII	GAAGA	4 cut(s)	223, 226, 295, 373
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	1 cut(s)	103
Mly113I	GGCGCC	2 cut(s)	36, 261
MlyI	GAGTC	2 cut(s)	185, 212
MseI	TTAA	1 cut(s)	345
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	4 cut(s)	33, 326, 389, 449
NarI	GGCGCC	2 cut(s)	36, 261
NciI	CCSGG	1 cut(s)	51
NdeII	GATC	3 cut(s)	42, 150, 354
NlaIII	CATG	1 cut(s)	159
NlaIV	GGNNCC	4 cut(s)	37, 262, 462, 463
NmuCI	GTSAC	1 cut(s)	311
NruI	TCGCGA	1 cut(s)	324
PaeR7I	CTCGAG	2 cut(s)	244, 269
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	66, 80
PkrI	GCNGC	8 cut(s)	26, 180, 224, 319, 331, 445, 448, 451
PleI	GAGTC	2 cut(s)	185, 211
PluTI	GGCGCC	2 cut(s)	39, 264
PpsI	GAGTC	2 cut(s)	185, 211
PpuMI	RGGWCCY	1 cut(s)	461
Psp124BI	GAGCTC	1 cut(s)	21
Psp5II	RGGWCCY	1 cut(s)	461
PspN4I	GGNNCC	4 cut(s)	37, 262, 462, 463
PspPI	GGNCC	3 cut(s)	249, 307, 461
PspPPI	RGGWCCY	1 cut(s)	461
PspXI	VCTCGAGB	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	42
RruI	TCGCGA	1 cut(s)	324
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	8 cut(s)	25, 179, 223, 318, 330, 444, 447, 450
Sau3AI	GATC	3 cut(s)	42, 150, 354
Sau96I	GGNCC	3 cut(s)	249, 307, 461
SchI	GAGTC	2 cut(s)	185, 212
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	9 cut(s)	21, 90, 122, 251, 276, 309, 454, 471, 484
SfaNI	GCATC	1 cut(s)	69
SfcI	CTRYAG	1 cut(s)	444
SfoI	GGCGCC	2 cut(s)	37, 262
Sfr274I	CTCGAG	2 cut(s)	244, 269
SinI	GGWCC	3 cut(s)	249, 307, 461
SlaI	CTCGAG	2 cut(s)	244, 269
SmlI	CTYRAG	5 cut(s)	8, 137, 198, 244, 269
SmoI	CTYRAG	5 cut(s)	8, 137, 198, 244, 269
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	6 cut(s)	25, 73, 133, 223, 318, 330
SspDI	GGCGCC	2 cut(s)	35, 260
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	3 cut(s)	423, 438, 456
TaqI	TCGA	2 cut(s)	245, 270
TasI	AATT	1 cut(s)	103
TauI	GCSGC	4 cut(s)	27, 225, 320, 332
TfiI	GAWTC	2 cut(s)	66, 80
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	4 cut(s)	178, 443, 446, 449
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	1 cut(s)	58
TspGWI	ACGGA	2 cut(s)	299, 326
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	3 cut(s)	249, 307, 461
XapI	RAATTY	1 cut(s)	103
XhoI	CTCGAG	2 cut(s)	244, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.