Rh1DG406300

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000904
Physical Location & Seq
Reverse (-)
62520637 .. 62522779
2143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG406300.1

Sequence Viewer

Length: 387 bp
ATGGTTCTCAAGACTGAACTGTGCCGCTTCAGTGGAGCTAAGATCTACCCAGGTAGAGGCATCCGATTTGTTCGTGCTGATTCTCAGGTGTTCCTGTTTGCAAACTCTAAGAACAAGAGGTACTTCCACAACAGACTGAAGCCAGCTAAACTTGCTTGGACAGCCATGTACAGAAAGCAACACAAGAAGGACATTTCTCAAGAAACTGTTAAGAAGAGGCGTCGCACCACGAAAAAGCCTTACTCTCGATCCATAGTGGGTGCTACTTTGGAGGTCATACAGAAGAGAAGAAGTGAAAAACCTGAAGTTCGAGATGCTGCAAGAGAGGCTGCTCTTCGGTATATATATTGTTATGCCTCCCATTTGCTTCTTGAGTTTCACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L24e

Protein Analysis

128

Amino Acids

15.2

Weight (kDa)

10.58

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L24e PF01246 3 - 67 6.9e-28 Ribosomal protein L24e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 25
AclWI GGATC 1 cut(s) 243
AcuI CTGAAG 3 cut(s) 13, 158, 324
AcyI GRCGYC 1 cut(s) 220
AfaI GTAC 2 cut(s) 122, 170
AfiI CCNNNNNNNGG 1 cut(s) 56
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 2 cut(s) 38, 146
AluI AGCT 2 cut(s) 38, 146
AlwI GGATC 1 cut(s) 243
ApeKI GCWGC 2 cut(s) 317, 329
BbvI GCAGC 2 cut(s) 304, 316
BciT130I CCWGG 1 cut(s) 51
BglII AGATCT 1 cut(s) 42
BisI GCNGC 3 cut(s) 25, 318, 330
BlsI GCNGC 3 cut(s) 26, 319, 331
Bme1390I CCNGG 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 2 cut(s) 69, 304
BpuEI CTTGAG 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 49
Bsc4I CCNNNNNNNGG 1 cut(s) 56
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 49
BseGI GGATG 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 98
BseXI GCAGC 2 cut(s) 304, 316
BslI CCNNNNNNNGG 1 cut(s) 56
Bsp1407I TGTACA 1 cut(s) 168
Bsp143I GATC 2 cut(s) 42, 248
BspACI CCGC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 97
BspPI GGATC 1 cut(s) 243
BspQI GCTCTTC 1 cut(s) 339
BsrGI TGTACA 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 2 cut(s) 42, 248
BssNI GRCGYC 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 2 cut(s) 21, 208
Bst6I CTCTTC 3 cut(s) 209, 278, 339
BstACI GRCGYC 1 cut(s) 220
BstAUI TGTACA 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 3 cut(s) 39, 84, 108
BstF5I GGATG 1 cut(s) 60
BstKTI GATC 2 cut(s) 45, 251
BstMBI GATC 2 cut(s) 42, 248
BstMWI GCNNNNNNNGC 3 cut(s) 152, 161, 326
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 304, 316
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BtsCI GGATG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 144
CseI GACGC 1 cut(s) 209
Csp6I GTAC 2 cut(s) 121, 169
CviAII CATG 1 cut(s) 166
CviJI RGCY 6 cut(s) 38, 142, 146, 164, 238, 329
CviKI_1 RGCY 6 cut(s) 38, 142, 146, 164, 238, 329
CviQI GTAC 2 cut(s) 121, 169
DdeI CTNAG 3 cut(s) 39, 84, 108
DpnI GATC 2 cut(s) 44, 250
DpnII GATC 2 cut(s) 42, 248
Eam1104I CTCTTC 3 cut(s) 209, 278, 339
EarI CTCTTC 3 cut(s) 209, 278, 339
Eco57I CTGAAG 3 cut(s) 13, 158, 324
EcoRII CCWGG 1 cut(s) 49
FaeI CATG 1 cut(s) 169
FaiI YATR 7 cut(s) 167, 254, 278, 342, 344, 346, 354
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 1 cut(s) 165
Fnu4HI GCNGC 3 cut(s) 25, 318, 330
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 3 cut(s) 25, 318, 330
GluI GCNGC 3 cut(s) 25, 318, 330
HgaI GACGC 1 cut(s) 209
Hin1I GRCGYC 1 cut(s) 220
Hin1II CATG 1 cut(s) 169
HinfI GANTC 1 cut(s) 80
Hpy188I TCNGA 1 cut(s) 65
Hpy188III TCNNGA 5 cut(s) 10, 200, 246, 311, 371
Hpy99I CGWCG 1 cut(s) 225
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 2 cut(s) 21, 208
HpyCH4V TGCA 2 cut(s) 101, 320
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 161, 326
HpyF3I CTNAG 3 cut(s) 39, 84, 108
Hsp92I GRCGYC 1 cut(s) 220
Hsp92II CATG 1 cut(s) 169
Kzo9I GATC 2 cut(s) 42, 248
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 6 cut(s) 36, 63, 71, 107, 156, 315
Lsp1109I GCAGC 2 cut(s) 304, 316
LweI GCATC 2 cut(s) 69, 304
MalI GATC 2 cut(s) 44, 250
MboI GATC 2 cut(s) 42, 248
MboII GAAGA 4 cut(s) 226, 295, 300, 326
MflI RGATCY 1 cut(s) 42
MnlI CCTC 6 cut(s) 50, 111, 210, 265, 319, 367
MseI TTAA 2 cut(s) 210, 385
MspR9I CCNGG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 3 cut(s) 152, 161, 326
NdeII GATC 2 cut(s) 42, 248
NlaIII CATG 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 339
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 3 cut(s) 26, 319, 331
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PsrI GAACNNNNNNTAC 2 cut(s) 104, 136
PsuI RGATCY 1 cut(s) 42
RsaI GTAC 2 cut(s) 122, 170
RsaNI GTAC 2 cut(s) 121, 169
SapI GCTCTTC 1 cut(s) 339
SaqAI TTAA 2 cut(s) 210, 385
SatI GCNGC 3 cut(s) 25, 318, 330
Sau3AI GATC 2 cut(s) 42, 248
ScrFI CCNGG 1 cut(s) 51
SetI ASST 7 cut(s) 40, 55, 90, 122, 148, 276, 304
SfaNI GCATC 2 cut(s) 69, 304
SmlI CTYRAG 3 cut(s) 8, 198, 371
SmoI CTYRAG 3 cut(s) 8, 198, 371
SsiI CCGC 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 49
TaaI ACNGT 2 cut(s) 21, 208
TaqI TCGA 2 cut(s) 247, 310
TatI WGTACW 1 cut(s) 168
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 2 cut(s) 210, 385
Tru9I TTAA 2 cut(s) 210, 385
TscAI CASTG 1 cut(s) 37
TseI GCWGC 2 cut(s) 317, 329
TspRI CASTG 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.