Prupe.7G121200_v2.0.a1

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000904
Physical Location & Seq
Reverse (-)
14438623 .. 14440853
2231 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G121200.1

Sequence Viewer

Length: 495 bp
ATGGTTCTCAAGACCGAACTCTGTCGTTTTAGCGGGGCCAAGATTTACCCAGGAAAGGGCATCAGATTTATTCGTTCTGATTCTCAGGTCTTCCTGTTTGCCAACTCAAAATGCAAAAGGTACTTCCACAACAGGTTGAAGCCATCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCACAAAAAGGATATTGCTCAAGAAGCTGTGAAGAAGAGGAGACGTACCACCAAGAAGCCTTACTCAAGGTCTATTGTGGGTGCTACACTTGAGGTTATCCAGAAGAGGAGAACTGAGAAGCCCGAGGTTCGTGATGCTGCAAGGGAAGCTGCTCTCCGTGAAATCAAGGAGAGGATCAAGAAAACCAAGGATGAAAAGAAGGCCAAGAAGGCAGAAGTTACAAAATCCCAAAAATCTCAAGGCAAGGGTAGCGTTACCAGGGGAGGTGCACAACCAAAGGGACCAAAGCTTGGGGGTGGCGGTGGCAAGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L24e

Protein Analysis

165

Amino Acids

18.66

Weight (kDa)

10.85

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 470
AciI CCGC 2 cut(s) 33, 480
AclWI GGATC 1 cut(s) 362
AfaI GTAC 3 cut(s) 122, 170, 226
AfeI AGCGCT 1 cut(s) 491
AfiI CCNNNNNNNGG 4 cut(s) 55, 56, 171, 470
AgsI TTSAA 1 cut(s) 139
AjnI CCWGG 3 cut(s) 49, 155, 437
AluBI AGCT 4 cut(s) 151, 206, 329, 469
AluI AGCT 4 cut(s) 151, 206, 329, 469
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 1 cut(s) 214
Alw44I GTGCAC 1 cut(s) 447
AlwI GGATC 1 cut(s) 362
Ama87I CYCGRG 1 cut(s) 302
Aor51HI AGCGCT 1 cut(s) 491
AoxI GGCC 2 cut(s) 36, 381
ApaLI GTGCAC 1 cut(s) 447
ApeKI GCWGC 3 cut(s) 178, 317, 329
AspLEI GCGC 1 cut(s) 492
AspS9I GGNCC 2 cut(s) 36, 461
AvaI CYCGRG 1 cut(s) 302
AvaII GGWCC 1 cut(s) 461
BaeGI GKGCMC 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 3 cut(s) 190, 304, 316
BccI CCATC 1 cut(s) 151
BciT130I CCWGG 3 cut(s) 51, 157, 439
BcoDI GTCTC 1 cut(s) 214
BfoI RGCGCY 1 cut(s) 493
BglI GCCNNNNNGGC 1 cut(s) 389
BisI GCNGC 3 cut(s) 179, 318, 330
BlsI GCNGC 3 cut(s) 180, 319, 331
Bme1390I CCNGG 3 cut(s) 51, 157, 439
Bme18I GGWCC 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 302
BmgT120I GGNCC 2 cut(s) 36, 461
BmiI GGNNCC 2 cut(s) 37, 462
BmrFI CCNGG 3 cut(s) 51, 157, 439
BmsI GCATC 2 cut(s) 69, 304
BpiI GAAGAC 1 cut(s) 82
BpuEI CTTGAG 4 cut(s) 183, 229, 290, 402
BsaJI CCNNGG 4 cut(s) 49, 303, 366, 438
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 56, 171, 470
BseBI CCWGG 3 cut(s) 51, 157, 439
BseDI CCNNGG 4 cut(s) 49, 303, 366, 438
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 4 cut(s) 55, 56, 171, 470
BseMII CTCAG 2 cut(s) 98, 285
BseRI GAGGAG 2 cut(s) 232, 301
BseSI GKGCMC 1 cut(s) 451
BseXI GCAGC 3 cut(s) 190, 304, 316
BshFI GGCC 2 cut(s) 38, 383
BsiHKAI GWGCWC 1 cut(s) 451
BsiHKCI CYCGRG 1 cut(s) 302
BslFI GGGAC 1 cut(s) 474
BslI CCNNNNNNNGG 4 cut(s) 55, 56, 171, 470
BsmAI GTCTC 1 cut(s) 214
BsmBI CGTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 474
BsnI GGCC 2 cut(s) 38, 383
BsoBI CYCGRG 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 451
Bsp1407I TGTACA 1 cut(s) 168
Bsp143I GATC 1 cut(s) 354
BspACI CCGC 2 cut(s) 33, 480
BspANI GGCC 2 cut(s) 38, 383
BspCNI CTCAG 2 cut(s) 97, 286
BspLI GGNNCC 2 cut(s) 37, 462
BspPI GGATC 1 cut(s) 362
BsrGI TGTACA 1 cut(s) 168
BssECI CCNNGG 4 cut(s) 49, 303, 366, 438
BssMI GATC 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 366
Bst2UI CCWGG 3 cut(s) 51, 157, 439
Bst6I CTCTTC 2 cut(s) 209, 278
BstAUI TGTACA 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 488
BstDEI CTNAG 2 cut(s) 84, 294
BstF5I GGATG 1 cut(s) 376
BstH2I RGCGCY 1 cut(s) 493
BstHHI GCGC 1 cut(s) 492
BstKTI GATC 1 cut(s) 357
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 1 cut(s) 354
BstMWI GCNNNNNNNGC 5 cut(s) 148, 203, 326, 389, 429
BstNI CCWGG 3 cut(s) 51, 157, 439
BstSCI CCNGG 3 cut(s) 49, 155, 437
BstSLI GKGCMC 1 cut(s) 451
BstV1I GCAGC 3 cut(s) 190, 304, 316
BstV2I GAAGAC 1 cut(s) 82
BsuRI GGCC 2 cut(s) 38, 383
BtsCI GGATG 1 cut(s) 376
Cac8I GCNNGC 1 cut(s) 488
CfoI GCGC 1 cut(s) 492
Cfr13I GGNCC 2 cut(s) 36, 461
Csp6I GTAC 3 cut(s) 121, 169, 225
CviAII CATG 1 cut(s) 166
CviQI GTAC 3 cut(s) 121, 169, 225
DdeI CTNAG 2 cut(s) 84, 294
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
Eam1104I CTCTTC 2 cut(s) 209, 278
EarI CTCTTC 2 cut(s) 209, 278
Eco130I CCWWGG 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 461
Eco47III AGCGCT 1 cut(s) 491
Eco88I CYCGRG 1 cut(s) 302
EcoRII CCWGG 3 cut(s) 49, 155, 437
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 1 cut(s) 169
FaiI YATR 1 cut(s) 167
FaqI GGGAC 1 cut(s) 474
FatI CATG 1 cut(s) 165
FauI CCCGC 1 cut(s) 26
Fnu4HI GCNGC 3 cut(s) 179, 318, 330
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 3 cut(s) 179, 318, 330
GlaI GCGC 1 cut(s) 491
GluI GCNGC 3 cut(s) 179, 318, 330
HaeII RGCGCY 1 cut(s) 493
HaeIII GGCC 2 cut(s) 38, 383
HhaI GCGC 1 cut(s) 492
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HindIII AAGCTT 2 cut(s) 149, 467
HinfI GANTC 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 449
Hpy188I TCNGA 2 cut(s) 65, 79
Hpy188III TCNNGA 5 cut(s) 10, 200, 280, 311, 358
Hpy8I GTNNAC 1 cut(s) 449
HpyAV CCTTC 2 cut(s) 373, 382
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 3 cut(s) 114, 320, 449
HpyF10VI GCNNNNNNNGC 5 cut(s) 148, 203, 326, 389, 429
HpyF3I CTNAG 2 cut(s) 84, 294
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 1 cut(s) 490
Kzo9I GATC 1 cut(s) 354
Lsp1109I GCAGC 3 cut(s) 190, 304, 316
LweI GCATC 2 cut(s) 69, 304
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 2 cut(s) 397, 433
MalI GATC 1 cut(s) 356
MboI GATC 1 cut(s) 354
MboII GAAGA 4 cut(s) 82, 223, 226, 295
MhlI GDGCHC 1 cut(s) 451
MnlI CCTC 6 cut(s) 210, 265, 279, 298, 345, 437
MspR9I CCNGG 3 cut(s) 51, 157, 439
MvaI CCWGG 3 cut(s) 51, 157, 439
MwoI GCNNNNNNNGC 5 cut(s) 148, 203, 326, 389, 429
NdeII GATC 1 cut(s) 354
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 2 cut(s) 37, 462
PfeI GAWTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 470
PkrI GCNGC 3 cut(s) 180, 319, 331
Psp6I CCWGG 3 cut(s) 49, 155, 437
PspGI CCWGG 3 cut(s) 49, 155, 437
PspN4I GGNNCC 2 cut(s) 37, 462
PspPI GGNCC 2 cut(s) 36, 461
RsaI GTAC 3 cut(s) 122, 170, 226
RsaNI GTAC 3 cut(s) 121, 169, 225
SatI GCNGC 3 cut(s) 179, 318, 330
Sau3AI GATC 1 cut(s) 354
Sau96I GGNCC 2 cut(s) 36, 461
ScrFI CCNGG 3 cut(s) 51, 157, 439
SduI GDGCHC 1 cut(s) 451
SfaNI GCATC 2 cut(s) 69, 304
SinI GGWCC 1 cut(s) 461
SmlI CTYRAG 5 cut(s) 8, 198, 244, 269, 417
SmoI CTYRAG 5 cut(s) 8, 198, 244, 269, 417
SsiI CCGC 2 cut(s) 33, 480
StyD4I CCNGG 3 cut(s) 49, 155, 437
StyI CCWWGG 1 cut(s) 366
TaiI ACGT 1 cut(s) 226
TaqII GACCGA 1 cut(s) 29
TatI WGTACW 1 cut(s) 168
TfiI GAWTC 1 cut(s) 80
TseI GCWGC 3 cut(s) 178, 317, 329
TspDTI ATGAA 1 cut(s) 387
TspGWI ACGGA 1 cut(s) 326
Van91I CCANNNNNTGG 1 cut(s) 470
VneI GTGCAC 1 cut(s) 447
VpaK11BI GGWCC 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.