Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

58955270 .. 58955865

Gene Structure 596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG393800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 383 bp

ATGTCGTCCCGGCACATCTTCCTCCAGGAACCGCAGGAGGCAGCCATGGTTCTCAAGACTGAGCTTTGCCGCTTCAGTGGTGCCAAGATCTACCCTGGTAGGGGCATCAGATTCATCCGCTCCGATTCTCAGGTTTTCCTGTTCATAAATTCCAAGTGCAAGAGGTACTTCCACAACCGCCTCAAGCCGTCCAAGATCACATGGACTGCCATGTTCAGAAAGCAGCACAAGAAGGACTCTGCTCAAGAATCTGTGAAGAAGAAGCGCCGTGCCACCAAGAAGCCTTACTCAAGGTCCATTGTTGGTGCCACTTTAGAGGTCATCCAGAAGAGAAGGACTGAGAAGCCTGAGGTCCGTGATGCTGCTCGCGAGGCCGCTCTCTG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

127

Amino Acids

14.86

Weight (kDa)

10.76

Isoelectric Point (pI)

63.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	18 - 82	2.8e-28	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	80, 305
AccBSI	CCGCTC	2 cut(s)	120, 377
AccII	CGCG	1 cut(s)	369
AciI	CCGC	5 cut(s)	32, 70, 118, 178, 375
AcsI	RAATTY	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	58
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	100, 101
AjnI	CCWGG	2 cut(s)	24, 94
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
AoxI	GGCC	1 cut(s)	372
ApeKI	GCWGC	3 cut(s)	41, 223, 362
ApoI	RAATTY	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	2 cut(s)	294, 352
AsuC2I	CCSGG	1 cut(s)	10
AvaII	GGWCC	2 cut(s)	294, 352
AxyI	CCTNAGG	1 cut(s)	348
BanI	GGYRCC	2 cut(s)	80, 305
BbvI	GCAGC	3 cut(s)	53, 235, 349
BceAI	ACGGC	2 cut(s)	172, 252
BciT130I	CCWGG	2 cut(s)	26, 96
BcnI	CCSGG	1 cut(s)	10
BfoI	RGCGCY	1 cut(s)	268
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	5 cut(s)	42, 70, 224, 363, 375
BlsI	GCNGC	5 cut(s)	43, 71, 225, 364, 376
Bme1390I	CCNGG	3 cut(s)	10, 26, 96
Bme18I	GGWCC	2 cut(s)	294, 352
BmgT120I	GGNCC	2 cut(s)	294, 352
BmiI	GGNNCC	3 cut(s)	30, 82, 307
BmrFI	CCNGG	3 cut(s)	10, 26, 96
BmsI	GCATC	2 cut(s)	114, 349
BpmI	CTGGAG	1 cut(s)	8
BpuEI	CTTGAG	4 cut(s)	38, 167, 228, 274
BpuMI	CCSGG	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	45, 94
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 101
Bse21I	CCTNAGG	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	26, 96
BseDI	CCNNGG	2 cut(s)	45, 94
BseGI	GGATG	2 cut(s)	114, 321
BseLI	CCNNNNNNNGG	2 cut(s)	100, 101
BseMII	CTCAG	4 cut(s)	51, 143, 330, 339
BseXI	GCAGC	3 cut(s)	53, 235, 349
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	1 cut(s)	374
BshNI	GGYRCC	2 cut(s)	80, 305
BsiSI	CCGG	1 cut(s)	10
BslI	CCNNNNNNNGG	2 cut(s)	100, 101
BsnI	GGCC	1 cut(s)	374
Bsp143I	GATC	2 cut(s)	87, 195
Bsp19I	CCATGG	1 cut(s)	45
Bsp68I	TCGCGA	1 cut(s)	369
BspACI	CCGC	5 cut(s)	32, 70, 118, 178, 375
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	4 cut(s)	52, 142, 331, 340
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	3 cut(s)	30, 82, 307
BspT107I	GGYRCC	2 cut(s)	80, 305
BsrBI	CCGCTC	2 cut(s)	120, 377
BssECI	CCNNGG	2 cut(s)	45, 94
BssMI	GATC	2 cut(s)	87, 195
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	2 cut(s)	26, 96
Bst6I	CTCTTC	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	4 cut(s)	60, 129, 339, 348
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	114, 321
BstFNI	CGCG	1 cut(s)	369
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	2 cut(s)	90, 198
BstMBI	GATC	2 cut(s)	87, 195
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNI	CCWGG	2 cut(s)	26, 96
BstSCI	CCNGG	3 cut(s)	8, 24, 94
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	3 cut(s)	53, 235, 349
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
Bsu36I	CCTNAGG	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	374
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	114, 321
BtsIMutI	CAGTG	1 cut(s)	82
BtuMI	TCGCGA	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	367
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	2 cut(s)	294, 352
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	3 cut(s)	46, 201, 211
CviJI	RGCY	6 cut(s)	44, 64, 187, 283, 346, 374
CviKI_1	RGCY	6 cut(s)	44, 64, 187, 283, 346, 374
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	4 cut(s)	60, 129, 339, 348
DpnI	GATC	2 cut(s)	89, 197
DpnII	GATC	2 cut(s)	87, 195
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	2 cut(s)	294, 352
Eco57I	CTGAAG	1 cut(s)	58
Eco81I	CCTNAGG	1 cut(s)	348
EcoRII	CCWGG	2 cut(s)	24, 94
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	3 cut(s)	49, 204, 214
FaiI	YATR	4 cut(s)	47, 146, 202, 212
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FatI	CATG	3 cut(s)	45, 200, 210
Fnu4HI	GCNGC	5 cut(s)	42, 70, 224, 363, 375
FokI	GGATG	2 cut(s)	101, 308
Fsp4HI	GCNGC	5 cut(s)	42, 70, 224, 363, 375
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	5 cut(s)	42, 70, 224, 363, 375
GsuI	CTGGAG	1 cut(s)	8
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	1 cut(s)	374
HapII	CCGG	1 cut(s)	10
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	3 cut(s)	49, 204, 214
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HinfI	GANTC	4 cut(s)	111, 125, 236, 248
HpaII	CCGG	1 cut(s)	10
Hpy188I	TCNGA	3 cut(s)	110, 124, 218
Hpy188III	TCNNGA	4 cut(s)	55, 245, 325, 368
HpyAV	CCTTC	2 cut(s)	226, 327
HpyCH4V	TGCA	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	4 cut(s)	60, 129, 339, 348
Hsp92II	CATG	3 cut(s)	49, 204, 214
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	87, 195
LmnI	GCTCC	1 cut(s)	125
Lsp1109I	GCAGC	3 cut(s)	53, 235, 349
LweI	GCATC	2 cut(s)	114, 349
MalI	GATC	2 cut(s)	89, 197
MbiI	CCGCTC	2 cut(s)	120, 377
MboI	GATC	2 cut(s)	87, 195
MboII	GAAGA	4 cut(s)	10, 268, 271, 340
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	1 cut(s)	148
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	7 cut(s)	31, 32, 156, 191, 310, 343, 364
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	3 cut(s)	10, 26, 96
MvaI	CCWGG	2 cut(s)	26, 96
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	371
NciI	CCSGG	1 cut(s)	10
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	87, 195
NlaIII	CATG	3 cut(s)	49, 204, 214
NlaIV	GGNNCC	3 cut(s)	30, 82, 307
NruI	TCGCGA	1 cut(s)	369
PfeI	GAWTC	3 cut(s)	111, 125, 248
PfoI	TCCNGGA	1 cut(s)	24
PkrI	GCNGC	5 cut(s)	43, 71, 225, 364, 376
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
Psp6I	CCWGG	2 cut(s)	24, 94
PspGI	CCWGG	2 cut(s)	24, 94
PspN4I	GGNNCC	3 cut(s)	30, 82, 307
PspPI	GGNCC	2 cut(s)	294, 352
PsuI	RGATCY	1 cut(s)	87
RruI	TCGCGA	1 cut(s)	369
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SatI	GCNGC	5 cut(s)	42, 70, 224, 363, 375
Sau3AI	GATC	2 cut(s)	87, 195
Sau96I	GGNCC	2 cut(s)	294, 352
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	3 cut(s)	10, 26, 96
SetI	ASST	6 cut(s)	66, 135, 167, 296, 321, 354
SfaNI	GCATC	2 cut(s)	114, 349
SinI	GGWCC	2 cut(s)	294, 352
SmlI	CTYRAG	4 cut(s)	53, 182, 243, 289
SmoI	CTYRAG	4 cut(s)	53, 182, 243, 289
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	5 cut(s)	32, 70, 118, 178, 375
StyD4I	CCNGG	3 cut(s)	8, 24, 94
StyI	CCWWGG	1 cut(s)	45
TasI	AATT	1 cut(s)	148
TauI	GCSGC	2 cut(s)	72, 377
TfiI	GAWTC	3 cut(s)	111, 125, 248
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	3 cut(s)	41, 223, 362
TspDTI	ATGAA	2 cut(s)	103, 133
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	2 cut(s)	294, 352
XapI	RAATTY	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.