Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000904

Physical Location & Seq

Genomic Coordinates Reverse (-)

32430502 .. 32431652

Gene Structure 1151 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024143

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTGCTGGGTTTCTACTCCTGATGGGTCCCGACCGAACTCTGTAGGTTCAGTGGGGCGAAGATCTACCCTGGCAGAGGCATCAGATTTATCCGGTCTGATTCTCAGGTTTACCATTTACCAGGGCATTTTGGTGGTGTTCCTCTTTGCCAATTCAAAATGCAAGAGGTACTTCCACAATCGGTTGAAGCCATCTAAGATTACCTGGACAGCCATGTACAGGAAGCAACACAAGAAGGATATTGCTCAAGAATCTGTTAAGAAGAGGAGACGTGCCAATAAGAAGCCTTATTCAAGGTCAATAGTTGGTGCCACCCTGGAGGTTATCCAGAAGAGGAGGACCGAAAAGCCTGAAGTTCGTGATGCTGCTCGTGAGGCCGCACTCCGTGAAATCAAGGAAAGGATCAAGAAGACCAAGGATGAAAAGAAGGCGAAGAAGGCAGAAGTTGTTGCCAAACAGAAGAGCAAGGTTCAGAATATTTCCAAGGGAGCTGCCCCCAAGGGTCCCAAGCTTGGCGGTGGCGGCGGCAAGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

179

Amino Acids

20.02

Weight (kDa)

10.74

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	46 - 83	5.5e-12	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000904)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36620 AT3G53020
fragaria_vesca	FvH4_2g09804 FvH4_5g01720 FvH4_6g17440 FvH4_6g17440 FvH4_7g29120
malus_domestica	MD00G1145600.v1.1 MD04G1065300.v1.1 MD12G1100700.v1.1 MD14G1094900.v1.1
prunus_persica	Prupe.5G092800_v2.0.a1 Prupe.7G121200_v2.0.a1 Prupe.7G121200_v2.0.a1
pyrus_communis	pycom04g05890 pycom06g07370 pycom12g09910 pycom14g09310
rosa_chinensis	RchiOBHm_Chr1g0376871 RchiOBHm_Chr3g0471681 RchiOBHm_Chr7g0199011
rosa_laevigata	RLG00000003128 RLG00000003824 RLG00000008605 RLG00000015523 RLG00000017381 RLG00000024143 RLG00000026563
rosa_multiflora	Rmu_sc0000363.1_g000009 Rmu_sc0002113.1_g000003 Rmu_sc0002563.1_g000062 Rmu_sc0006266.1_g000027 Rmu_sc0012026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00076100 Rroxscaffold_3G00257220 Rroxscaffold_4G00281660 Rroxscaffold_6G00409660
rosa_rugosa	Rorug01G0399200 Rorug01G0399300 Rorug07G0052100 Rorug07G0052100
rosa_samantha	Rh1AG416500 Rh1BG375700 Rh1CG389500 Rh1DG406300 Rh2AG393800 Rh2CG380500 Rh3AG170100 Rh3BG195800 Rh3CG186500 Rh3CG195200 Rh3DG179200 Rh5CG364000 Rh7AG175100 Rh7AG434000 Rh7BG178400 Rh7CG184300 Rh7CG453000 Rh7DG177800 Rh7DG343600
rosa_wichuraiana	Rw0G009000 Rw1G036540 Rw4G004160 Rw4G004900 Rw7G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AciI	CCGC	4 cut(s)	378, 516, 522, 525
AclWI	GGATC	1 cut(s)	410
AcuI	CTGAAG	1 cut(s)	372
AdeI	CACNNNGTG	1 cut(s)	386
AfaI	GTAC	2 cut(s)	170, 218
AfeI	AGCGCT	1 cut(s)	533
AfiI	CCNNNNNNNGG	3 cut(s)	76, 219, 512
AgsI	TTSAA	3 cut(s)	156, 187, 294
AjiI	CACGTC	1 cut(s)	272
AjnI	CCWGG	4 cut(s)	69, 120, 203, 315
AluBI	AGCT	2 cut(s)	491, 511
AluI	AGCT	2 cut(s)	491, 511
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	1 cut(s)	410
Aor51HI	AGCGCT	1 cut(s)	533
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	365, 491
AspLEI	GCGC	1 cut(s)	534
AspS9I	GGNCC	3 cut(s)	27, 339, 503
AvaII	GGWCC	3 cut(s)	27, 339, 503
BanI	GGYRCC	1 cut(s)	308
BauI	CACGAG	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	416
BbvI	GCAGC	2 cut(s)	352, 478
BccI	CCATC	2 cut(s)	17, 199
BciT130I	CCWGG	4 cut(s)	71, 122, 205, 317
BcoDI	GTCTC	1 cut(s)	262
BfmI	CTRYAG	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	535
BglII	AGATCT	1 cut(s)	62
BisI	GCNGC	5 cut(s)	366, 378, 492, 523, 526
BlsI	GCNGC	5 cut(s)	367, 379, 493, 524, 527
Bme1390I	CCNGG	4 cut(s)	71, 122, 205, 317
Bme18I	GGWCC	3 cut(s)	27, 339, 503
BmgBI	CACGTC	1 cut(s)	272
BmgT120I	GGNCC	3 cut(s)	27, 339, 503
BmiI	GGNNCC	5 cut(s)	28, 29, 310, 504, 505
BmrFI	CCNGG	4 cut(s)	71, 122, 205, 317
BmsI	GCATC	2 cut(s)	89, 352
BpiI	GAAGAC	1 cut(s)	416
BpmI	CTGGAG	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	231
BsaJI	CCNNGG	6 cut(s)	69, 121, 315, 414, 483, 498
BsaWI	WCCGGW	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 219, 512
BseBI	CCWGG	4 cut(s)	71, 122, 205, 317
BseDI	CCNNGG	6 cut(s)	69, 121, 315, 414, 483, 498
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	3 cut(s)	76, 219, 512
BseMII	CTCAG	1 cut(s)	118
BseRI	GAGGAG	2 cut(s)	280, 349
BseXI	GCAGC	2 cut(s)	352, 478
BseYI	CCCAGC	1 cut(s)	6
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	308
BsiEI	CGRYCG	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	2 cut(s)	13, 489
BslI	CCNNNNNNNGG	3 cut(s)	76, 219, 512
BsmAI	GTCTC	1 cut(s)	262
BsmBI	CGTCTC	1 cut(s)	262
BsmFI	GGGAC	2 cut(s)	13, 489
BsnI	GGCC	1 cut(s)	377
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	62, 402
BspACI	CCGC	4 cut(s)	378, 516, 522, 525
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	1 cut(s)	117
BspLI	GGNNCC	5 cut(s)	28, 29, 310, 504, 505
BspPI	GGATC	1 cut(s)	410
BspQI	GCTCTTC	1 cut(s)	455
BspT107I	GGYRCC	1 cut(s)	308
BsrGI	TGTACA	1 cut(s)	216
BssECI	CCNNGG	6 cut(s)	69, 121, 315, 414, 483, 498
BssMI	GATC	2 cut(s)	62, 402
BssSI	CACGAG	1 cut(s)	369
BssT1I	CCWWGG	3 cut(s)	414, 483, 498
Bst2BI	CACGAG	1 cut(s)	369
Bst2UI	CCWGG	4 cut(s)	71, 122, 205, 317
Bst6I	CTCTTC	3 cut(s)	257, 326, 455
BstAUI	TGTACA	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	530
BstDEI	CTNAG	2 cut(s)	104, 195
BstENI	CCTNNNNNAGG	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	424
BstH2I	RGCGCY	1 cut(s)	535
BstHHI	GCGC	1 cut(s)	534
BstKTI	GATC	2 cut(s)	65, 405
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	2 cut(s)	62, 402
BstMCI	CGRYCG	1 cut(s)	35
BstMWI	GCNNNNNNNGC	4 cut(s)	374, 437, 522, 531
BstNI	CCWGG	4 cut(s)	71, 122, 205, 317
BstSCI	CCNGG	4 cut(s)	69, 120, 203, 315
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	2 cut(s)	352, 478
BstV2I	GAAGAC	1 cut(s)	416
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	377
BtrI	CACGTC	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	530
CfoI	GCGC	1 cut(s)	534
Cfr13I	GGNCC	3 cut(s)	27, 339, 503
Csp6I	GTAC	2 cut(s)	169, 217
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	7 cut(s)	190, 212, 286, 349, 377, 491, 511
CviKI_1	RGCY	7 cut(s)	190, 212, 286, 349, 377, 491, 511
CviQI	GTAC	2 cut(s)	169, 217
DdeI	CTNAG	2 cut(s)	104, 195
DpnI	GATC	2 cut(s)	64, 404
DpnII	GATC	2 cut(s)	62, 402
DraIII	CACNNNGTG	1 cut(s)	386
Eam1104I	CTCTTC	3 cut(s)	257, 326, 455
EarI	CTCTTC	3 cut(s)	257, 326, 455
Eco130I	CCWWGG	3 cut(s)	414, 483, 498
Eco47I	GGWCC	3 cut(s)	27, 339, 503
Eco47III	AGCGCT	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	372
EcoNI	CCTNNNNNAGG	1 cut(s)	74
EcoO109I	RGGNCCY	2 cut(s)	27, 503
EcoRII	CCWGG	4 cut(s)	69, 120, 203, 315
EcoT14I	CCWWGG	3 cut(s)	414, 483, 498
ErhI	CCWWGG	3 cut(s)	414, 483, 498
Esp3I	CGTCTC	1 cut(s)	262
FaeI	CATG	1 cut(s)	217
FaiI	YATR	1 cut(s)	215
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FaqI	GGGAC	2 cut(s)	13, 489
FatI	CATG	1 cut(s)	213
Fnu4HI	GCNGC	5 cut(s)	366, 378, 492, 523, 526
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	5 cut(s)	366, 378, 492, 523, 526
GlaI	GCGC	1 cut(s)	533
GluI	GCNGC	5 cut(s)	366, 378, 492, 523, 526
GsaI	CCCAGC	1 cut(s)	10
GsuI	CTGGAG	1 cut(s)	338
HaeII	RGCGCY	1 cut(s)	535
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	534
Hin1II	CATG	1 cut(s)	217
Hin6I	GCGC	1 cut(s)	532
HinP1I	GCGC	1 cut(s)	532
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	2 cut(s)	100, 251
HpaII	CCGG	1 cut(s)	93
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	3 cut(s)	85, 99, 474
Hpy188III	TCNNGA	7 cut(s)	20, 30, 248, 328, 359, 371, 406
Hpy8I	GTNNAC	1 cut(s)	111
HpyAV	CCTTC	3 cut(s)	229, 421, 430
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	1 cut(s)	162
HpyF10VI	GCNNNNNNNGC	4 cut(s)	374, 437, 522, 531
HpyF3I	CTNAG	2 cut(s)	104, 195
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	1 cut(s)	217
HspAI	GCGC	1 cut(s)	532
KflI	GGGWCCC	2 cut(s)	27, 503
Kzo9I	GATC	2 cut(s)	62, 402
LguI	GCTCTTC	1 cut(s)	455
LmnI	GCTCC	1 cut(s)	488
Lsp1109I	GCAGC	2 cut(s)	352, 478
LweI	GCATC	2 cut(s)	89, 352
MaeII	ACGT	1 cut(s)	271
MalI	GATC	2 cut(s)	64, 404
MboI	GATC	2 cut(s)	62, 402
MboII	GAAGA	6 cut(s)	72, 274, 343, 421, 445, 472
MflI	RGATCY	1 cut(s)	62
MluCI	AATT	1 cut(s)	151
MnlI	CCTC	8 cut(s)	70, 152, 159, 258, 313, 327, 330, 367
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	131
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	4 cut(s)	71, 122, 205, 317
MvaI	CCWGG	4 cut(s)	71, 122, 205, 317
MwoI	GCNNNNNNNGC	4 cut(s)	374, 437, 522, 531
NdeII	GATC	2 cut(s)	62, 402
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	5 cut(s)	28, 29, 310, 504, 505
PciSI	GCTCTTC	1 cut(s)	455
PfeI	GAWTC	2 cut(s)	100, 251
PkrI	GCNGC	5 cut(s)	367, 379, 493, 524, 527
PpuMI	RGGWCCY	2 cut(s)	27, 503
Psp5II	RGGWCCY	2 cut(s)	27, 503
Psp6I	CCWGG	4 cut(s)	69, 120, 203, 315
PspFI	CCCAGC	1 cut(s)	6
PspGI	CCWGG	4 cut(s)	69, 120, 203, 315
PspN4I	GGNNCC	5 cut(s)	28, 29, 310, 504, 505
PspPI	GGNCC	3 cut(s)	27, 339, 503
PspPPI	RGGWCCY	2 cut(s)	27, 503
PsuI	RGATCY	1 cut(s)	62
RsaI	GTAC	2 cut(s)	170, 218
RsaNI	GTAC	2 cut(s)	169, 217
RseI	CAYNNNNRTG	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	455
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	5 cut(s)	366, 378, 492, 523, 526
Sau3AI	GATC	2 cut(s)	62, 402
Sau96I	GGNCC	3 cut(s)	27, 339, 503
ScrFI	CCNGG	4 cut(s)	71, 122, 205, 317
SfaNI	GCATC	2 cut(s)	89, 352
SfcI	CTRYAG	1 cut(s)	42
SinI	GGWCC	3 cut(s)	27, 339, 503
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
Sse9I	AATT	1 cut(s)	151
SsiI	CCGC	4 cut(s)	378, 516, 522, 525
SspI	AATATT	1 cut(s)	478
StyD4I	CCNGG	4 cut(s)	69, 120, 203, 315
StyI	CCWWGG	3 cut(s)	414, 483, 498
TaiI	ACGT	1 cut(s)	274
TaqII	GACCGA	2 cut(s)	49, 356
TasI	AATT	1 cut(s)	151
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	3 cut(s)	380, 525, 528
TfiI	GAWTC	2 cut(s)	100, 251
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	2 cut(s)	365, 491
TspDTI	ATGAA	1 cut(s)	435
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	3 cut(s)	27, 339, 503
XagI	CCTNNNNNAGG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.