Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005198

Physical Location & Seq

Genomic Coordinates Forward (+)

64467636 .. 64471551

Gene Structure 3916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G036550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2337 bp

ATGAATTTTGGAGGTTTGATCAGTAATAGTGGAGGTGTTGGGGGTTCAAGAGTTGTGGCTGAGATTGATCCACACAGCAGTGGTGGTGCCATTGCTCAACCACACTTTATTCCCAATTCAATGCAGACTTCCTCTGCCCTCTCCCTTTCAATAAAAAACATGGATGGGCACAATGAACTTGACCTGATTGCTGAGAGTTTCGACCCCGGGATTATTGGGAGGTTGAGGGAAGAGGAGTTTGACCAGAGCCGGTCAGGCAGTGACCACTTTGATGGGGCATCCGGTGATGATCAAGACCCTGTCGACGAGGATGATCGGCCACGGAGGAAGAAGAAGTATCATCGTCATACCCCCAGCCAAATCCAAGAACTGGAATCTTTCTTTAAGGAATGCCCACATCCTGATGAAAAGCAAAGGTTGGACCTCAGCAGGAGGCTTGGCTTGGAGACTAAGCAAACTCAACTGGAGCGCCATGAGAATATAATTCTTAGGCAAGAGAATGACAAGCTCCGAGCTGAGAATGGTGTGATGAAGGAAGCTATGTCAAATCCAATATGCCACAACTGTGGTGGCCCTGCCATTCCTGGCCAAATTTCATTTGATGAACACCAACTGAGGATTGAGAATGCTCGACTGAATGATGAACTGAGTCGAATTTGTACTTTGGCACAAAAGTTCTTGGGCAGGCCCATTTCAAACTTGGCTGCTCCCCGCTCTCTTCCAAGCTCGACTGCCGGTCTAGACCTGGCAATGGGAATAAATGGGATGGGTTGTTTGAATGCTGGAGGCAGCAATCAGTTGTCGATGGGGTTCGAGTTGGGAGATGGTGTTGGAAGCTCTTCACCTGTGATGCCTCTAATGAAACGACATGTTTACCTGGAGCTTGCAGGCGAAGCTATGGATGAATTGGTTAGGATGGTTCAAGCAGATACCCCTTTGTGGATGAAAAGTTCAGATGGTGGAAGCGAAACATTGAACGTGGAGCTGTACAGGACATTTTCTTGTATCAGTACCAGGCAAAGTGGCTTGGTAACTGATGCTTCAAGGGATTGTTGTATGGTGATCATAAACAGCTTGGCTCTTGTAGAGACTATGATGGATGCGAATCGATGGACAGATATGTTCCCTACTTTGGTTGCTAGAGCCTCCACCATTGGCATGATTTCCAGCGGCCCAAACGGAACCAGAAATGGTACTATTCAAATGATGCATGCCGAGCTTCAAATGCTTTCGCCATTGGTTCCAGTCCGTCCACTCAAGTTCCTCCGTTTTTCCAAGCAGCATGCAGAGGGTGTGTGGGCTGTTGTCGATGTTTCCATTGACATCCAGCAAGATGCTTCCAGTATGAACTGCCGGAGGCTTCCTTCTGGCTTCATTGTGCAAGATATGCCCAATGGTTACTCCAAGGTGACTTGGATAGAACATTTAGAATATAATGAGAGTGGTGTTCACCAACTGTTACAGCCATTACTACGTTCTGGTATTGGCTTTGGTGCACAGAGGTGGCTTGCCACTCTCCAGAGGGAATGTGAGTCCCTGACTTTCCTCATGTCCTCTACCAATCCTAATGAAGTTCCTAGAGGGTTAAGTATGAATTCAAAGAAAAGCATGCTAAGGTTGGCACAGCGGATGATGCAAAGCTTTTGTTCTGGGGTTTGTGGCTCATCAGTGCGCCAGTGGGACAAACTCTGTATTGATAATGTTAGTGACAACGTGAGGGTAATGGTGCGTCAGAGTTTGGAGGTCGGTGAGCCATCTGGCTTCGTGTTGAGTGCTGCAACATCTGTTTGGATGCCAGTATCAAGGTCAAGGCTGTTTGATTTCTTGCGAGACTGGCAATTAAGGGGGCAGTGGGACATTTTGGTCAGCTGTCGCCCACTGCAAGCCATGGTTCAGGTTGACAAGGATCACGGAGGTGGCAACAGTGTTTCTCTCTTTAATGCCAAGGGTCTTGATGCCAATAACAATAATAACATGCTGATGTTCCAAGAGACTAGGACGGATGCTTCAGGGTCAATAGTTGTGTATGCACCGATCACTTCAACAAGTTCAGATATCATGAGGGATGTTGTGTACGAGGGTGGAGATTCTACTTATGTAGAACTCTTACCATCAGGATTTGCAATCCTTCCTTGTGTTACTTCTGACCATGTCAAAGGAGAAGGAAATGGCTCTGATGATGGGGGATGTCTGCTGACAGTTGGATTCCAAATTGTGTGTGATGGTGGCCAACCAACATCCAAGCTCACTATGCACTCGGTTAAGACTATTATTGATCTTATCTCCTCCACCATTCAGAAGATCAAAAGTGCCCTTCAAATAAATGATGGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

778

Amino Acids

85.27

Weight (kDa)

5.48

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	110 - 154	4.9e-10	Homeodomain
START	PF01852	294 - 511	5.8e-44	START domain
PDF2_C	PF25797	531 - 773	1e-77	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005198)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130 FvH4_7g29130
malus_domestica	MD01G1198100.v1.1 MD07G1266200.v1.1
prunus_persica	Prupe.2G291400_v2.0.a1
pyrus_communis	pycom01g20820 pycom07g24390
rosa_chinensis	RchiOBHm_Chr1g0376881
rosa_laevigata	RLG00000026562
rosa_multiflora	Rmu_co8045660.1_g000001 Rmu_sc0002113.1_g000002 Rmu_ssc0000125.1_g000012
rosa_roxburghii	Rroxscaffold_4G00281650
rosa_rugosa	Rorug01G0399300 Rorug01G0399400 Rorug01G0399500 Rorug01G0399600 Rorug01G0399600
rosa_samantha	Rh1AG416600 Rh1BG375800 Rh1CG389600 Rh1DG406400
rosa_wichuraiana	Rw1G036550 Rw3G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1862
AccB1I	GGYRCC	1 cut(s)	86
AccB7I	CCANNNNNTGG	1 cut(s)	370
AccBSI	CCGCTC	1 cut(s)	714
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	3 cut(s)	712, 1170, 1627
AclWI	GGATC	2 cut(s)	62, 1914
AcoI	YGGCCR	3 cut(s)	317, 586, 2227
AcsI	RAATTY	4 cut(s)	4, 591, 654, 1594
AcuI	CTGAAG	1 cut(s)	1992
AfaI	GTAC	5 cut(s)	661, 989, 1012, 1195, 2075
AfiI	CCNNNNNNNGG	4 cut(s)	370, 751, 939, 1132
AflIII	ACRYGT	1 cut(s)	868
AhdI	GACNNNNNGTC	1 cut(s)	735
AjnI	CCWGG	4 cut(s)	583, 744, 876, 1013
AleI	CACNNNNGTG	4 cut(s)	78, 564, 1501, 1914
AloI	GAACNNNNNNTCC	2 cut(s)	934, 966
Alw21I	GWGCWC	1 cut(s)	1498
Alw26I	GTCTC	4 cut(s)	440, 1082, 1824, 1985
Alw44I	GTGCAC	1 cut(s)	1494
AlwI	GGATC	2 cut(s)	62, 1914
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	7 cut(s)	317, 571, 586, 686, 1171, 2227, 2329
ApaLI	GTGCAC	1 cut(s)	1494
ApeKI	GCWGC	4 cut(s)	704, 789, 1279, 1775
ApoI	RAATTY	4 cut(s)	4, 591, 654, 1594
Asp700I	GAANNNNTTC	1 cut(s)	838
AspLEI	GCGC	2 cut(s)	471, 1674
AspS9I	GGNCC	5 cut(s)	421, 572, 687, 1172, 2330
AsuC2I	CCSGG	2 cut(s)	207, 208
AsuHPI	GGTGA	6 cut(s)	296, 834, 1072, 1420, 1442, 1760
AvaI	CYCGRG	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	421
BaeGI	GKGCMC	3 cut(s)	171, 1498, 2314
BalI	TGGCCA	2 cut(s)	588, 2229
BanI	GGYRCC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	1498
BbvCI	CCTCAGC	1 cut(s)	425
BbvI	GCAGC	4 cut(s)	691, 801, 1291, 1762
BciT130I	CCWGG	4 cut(s)	585, 746, 878, 1015
BclI	TGATCA	3 cut(s)	18, 289, 1062
BcnI	CCSGG	2 cut(s)	207, 208
BcoDI	GTCTC	4 cut(s)	440, 1082, 1824, 1985
BfaI	CTAG	4 cut(s)	740, 1140, 1578, 1995
BfoI	RGCGCY	1 cut(s)	472
BglI	GCCNNNNNGGC	1 cut(s)	255
BisI	GCNGC	5 cut(s)	705, 790, 1171, 1280, 1776
BlsI	GCNGC	5 cut(s)	706, 791, 1172, 1281, 1777
Bme1390I	CCNGG	6 cut(s)	207, 208, 585, 746, 878, 1015
Bme18I	GGWCC	1 cut(s)	421
BmeRI	GACNNNNNGTC	1 cut(s)	735
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	5 cut(s)	421, 572, 687, 1172, 2330
BmiI	GGNNCC	3 cut(s)	88, 1183, 1242
BmrFI	CCNGG	6 cut(s)	207, 208, 585, 746, 878, 1015
BpmI	CTGGAG	4 cut(s)	485, 804, 899, 1502
Bpu10I	CCTNAGC	2 cut(s)	425, 1613
BpuEI	CTTGAG	1 cut(s)	1241
BpuMI	CCSGG	2 cut(s)	207, 208
Bsa29I	ATCGAT	1 cut(s)	1108
BsaBI	GATNNNNATC	1 cut(s)	1104
BsaJI	CCNNGG	6 cut(s)	205, 206, 320, 1404, 1887, 1944
BsaWI	WCCGGW	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	813, 843
Bsc4I	CCNNNNNNNGG	4 cut(s)	370, 751, 939, 1132
Bse118I	RCCGGY	2 cut(s)	249, 734
Bse1I	ACTGG	7 cut(s)	375, 468, 1244, 1341, 1675, 1796, 1838
Bse3DI	GCAATG	2 cut(s)	90, 756
Bse8I	GATNNNNATC	1 cut(s)	1104
BseBI	CCWGG	4 cut(s)	585, 746, 878, 1015
BseCI	ATCGAT	1 cut(s)	1108
BseDI	CCNNGG	6 cut(s)	205, 206, 320, 1404, 1887, 1944
BseJI	GATNNNNATC	1 cut(s)	1104
BseLI	CCNNNNNNNGG	4 cut(s)	370, 751, 939, 1132
BseMI	GCAATG	2 cut(s)	90, 756
BseMII	CTCAG	6 cut(s)	51, 183, 439, 507, 605, 638
BseNI	ACTGG	7 cut(s)	375, 468, 1244, 1341, 1675, 1796, 1838
BseRI	GAGGAG	2 cut(s)	248, 2275
BseSI	GKGCMC	3 cut(s)	171, 1498, 2314
BseXI	GCAGC	4 cut(s)	691, 801, 1291, 1762
BseYI	CCCAGC	1 cut(s)	353
BshFI	GGCC	7 cut(s)	319, 573, 588, 688, 1173, 2229, 2331
BshNI	GGYRCC	1 cut(s)	86
BshVI	ATCGAT	1 cut(s)	1108
BsiHKAI	GWGCWC	1 cut(s)	1498
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	5 cut(s)	207, 250, 282, 735, 1354
BslFI	GGGAC	3 cut(s)	1519, 1694, 1868
BslI	CCNNNNNNNGG	4 cut(s)	370, 751, 939, 1132
BsmAI	GTCTC	4 cut(s)	440, 1082, 1824, 1985
BsmFI	GGGAC	3 cut(s)	1519, 1694, 1868
BsmI	GAATGC	3 cut(s)	395, 631, 784
BsnI	GGCC	7 cut(s)	319, 573, 588, 688, 1173, 2229, 2331
BsoBI	CYCGRG	1 cut(s)	206
Bsp1286I	GDGCHC	3 cut(s)	171, 1498, 2314
Bsp1407I	TGTACA	1 cut(s)	987
Bsp143I	GATC	9 cut(s)	18, 67, 289, 313, 1062, 1906, 2034, 2275, 2301
Bsp19I	CCATGG	1 cut(s)	1887
BspACI	CCGC	3 cut(s)	712, 1170, 1627
BspANI	GGCC	7 cut(s)	319, 573, 588, 688, 1173, 2229, 2331
BspCNI	CTCAG	6 cut(s)	52, 184, 438, 508, 606, 639
BspDI	ATCGAT	1 cut(s)	1108
BspHI	TCATGA	1 cut(s)	2058
BspLI	GGNNCC	3 cut(s)	88, 1183, 1242
BspPI	GGATC	2 cut(s)	62, 1914
BspQI	GCTCTTC	1 cut(s)	844
BspT107I	GGYRCC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	714
BsrDI	GCAATG	2 cut(s)	90, 756
BsrFI	RCCGGY	2 cut(s)	249, 734
BsrGI	TGTACA	1 cut(s)	987
BsrI	ACTGG	7 cut(s)	375, 468, 1244, 1341, 1675, 1796, 1838
BssAI	RCCGGY	2 cut(s)	249, 734
BssECI	CCNNGG	6 cut(s)	205, 206, 320, 1404, 1887, 1944
BssMI	GATC	9 cut(s)	18, 67, 289, 313, 1062, 1906, 2034, 2275, 2301
BssT1I	CCWWGG	3 cut(s)	1404, 1887, 1944
Bst2UI	CCWGG	4 cut(s)	585, 746, 878, 1015
Bst4CI	ACNGT	4 cut(s)	566, 1458, 1925, 2200
Bst6I	CTCTTC	3 cut(s)	225, 723, 844
BstAPI	GCANNNNNTGC	1 cut(s)	1387
BstAUI	TGTACA	1 cut(s)	987
BstC8I	GCNNGC	8 cut(s)	686, 885, 889, 1212, 1284, 1509, 1610, 1884
BstDEI	CTNAG	9 cut(s)	60, 192, 425, 450, 488, 516, 614, 647, 1613
BstDSI	CCRYGG	2 cut(s)	320, 1887
BstH2I	RGCGCY	1 cut(s)	472
BstHHI	GCGC	2 cut(s)	471, 1674
BstKTI	GATC	9 cut(s)	21, 70, 292, 316, 1065, 1909, 2037, 2278, 2304
BstMAI	GTCTC	4 cut(s)	440, 1082, 1824, 1985
BstMBI	GATC	9 cut(s)	18, 67, 289, 313, 1062, 1906, 2034, 2275, 2301
BstMWI	GCNNNNNNNGC	8 cut(s)	255, 893, 1216, 1225, 1387, 1633, 1834, 2251
BstNI	CCWGG	4 cut(s)	585, 746, 878, 1015
BstNSI	RCATGY	5 cut(s)	872, 1214, 1286, 1612, 1978
BstSCI	CCNGG	6 cut(s)	205, 206, 583, 744, 876, 1013
BstSLI	GKGCMC	3 cut(s)	171, 1498, 2314
BstV1I	GCAGC	4 cut(s)	691, 801, 1291, 1762
BstXI	CCANNNNNNTGG	2 cut(s)	272, 566
Bsu15I	ATCGAT	1 cut(s)	1108
BsuRI	GGCC	7 cut(s)	319, 573, 588, 688, 1173, 2229, 2331
BsuTUI	ATCGAT	1 cut(s)	1108
BtgI	CCRYGG	2 cut(s)	320, 1887
BtsI	GCAGTG	4 cut(s)	85, 265, 1856, 1877
BtsIMutI	CAGTG	7 cut(s)	85, 265, 1674, 1682, 1856, 1877, 1930
Cac8I	GCNNGC	8 cut(s)	686, 885, 889, 1212, 1284, 1509, 1610, 1884
CciI	TCATGA	1 cut(s)	2058
CfoI	GCGC	2 cut(s)	471, 1674
Cfr10I	RCCGGY	2 cut(s)	249, 734
Cfr13I	GGNCC	5 cut(s)	421, 572, 687, 1172, 2330
Cfr9I	CCCGGG	1 cut(s)	206
ClaI	ATCGAT	1 cut(s)	1108
CseI	GACGC	1 cut(s)	1718
Csp6I	GTAC	5 cut(s)	660, 988, 1011, 1194, 2074
CspCI	CAANNNNNGTGG	4 cut(s)	36, 71, 550, 585
CviQI	GTAC	5 cut(s)	660, 988, 1011, 1194, 2074
DdeI	CTNAG	9 cut(s)	60, 192, 425, 450, 488, 516, 614, 647, 1613
DpnI	GATC	9 cut(s)	20, 69, 291, 315, 1064, 1908, 2036, 2277, 2303
DpnII	GATC	9 cut(s)	18, 67, 289, 313, 1062, 1906, 2034, 2275, 2301
DrdI	GACNNNNNNGTC	1 cut(s)	1862
DriI	GACNNNNNGTC	1 cut(s)	735
DseDI	GACNNNNNNGTC	1 cut(s)	1862
EaeI	YGGCCR	3 cut(s)	317, 586, 2227
Eam1104I	CTCTTC	3 cut(s)	225, 723, 844
Eam1105I	GACNNNNNGTC	1 cut(s)	735
EarI	CTCTTC	3 cut(s)	225, 723, 844
Eco130I	CCWWGG	3 cut(s)	1404, 1887, 1944
Eco32I	GATATC	1 cut(s)	2056
Eco47I	GGWCC	1 cut(s)	421
Eco57I	CTGAAG	1 cut(s)	1992
Eco88I	CYCGRG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	1594
EcoRII	CCWGG	4 cut(s)	583, 744, 876, 1013
EcoRV	GATATC	1 cut(s)	2056
EcoT14I	CCWWGG	3 cut(s)	1404, 1887, 1944
EcoT22I	ATGCAT	1 cut(s)	1212
ErhI	CCWWGG	3 cut(s)	1404, 1887, 1944
FaqI	GGGAC	3 cut(s)	1519, 1694, 1868
FauI	CCCGC	1 cut(s)	719
FbaI	TGATCA	3 cut(s)	18, 289, 1062
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	5 cut(s)	705, 790, 1171, 1280, 1776
Fsp4HI	GCNGC	5 cut(s)	705, 790, 1171, 1280, 1776
FspBI	CTAG	4 cut(s)	740, 1140, 1578, 1995
GlaI	GCGC	2 cut(s)	470, 1673
GluI	GCNGC	5 cut(s)	705, 790, 1171, 1280, 1776
GsaI	CCCAGC	1 cut(s)	357
GsuI	CTGGAG	4 cut(s)	485, 804, 899, 1502
HaeII	RGCGCY	1 cut(s)	472
HaeIII	GGCC	7 cut(s)	319, 573, 588, 688, 1173, 2229, 2331
HapII	CCGG	5 cut(s)	207, 250, 282, 735, 1354
HgaI	GACGC	1 cut(s)	1718
HhaI	GCGC	2 cut(s)	471, 1674
Hin6I	GCGC	2 cut(s)	469, 1672
HinP1I	GCGC	2 cut(s)	469, 1672
HincII	GTYRAC	2 cut(s)	304, 1900
HindII	GTYRAC	2 cut(s)	304, 1900
HindIII	AAGCTT	1 cut(s)	1639
HinfI	GANTC	6 cut(s)	374, 649, 1105, 1532, 2087, 2205
HpaII	CCGG	5 cut(s)	207, 250, 282, 735, 1354
HphI	GGTGA	6 cut(s)	296, 834, 1072, 1420, 1442, 1760
Hpy166II	GTNNAC	7 cut(s)	304, 874, 1253, 1450, 1496, 1900, 2074
Hpy188I	TCNGA	7 cut(s)	512, 955, 1734, 2053, 2146, 2176, 2298
Hpy188III	TCNNGA	8 cut(s)	48, 293, 401, 740, 1519, 1952, 2059, 2115
Hpy8I	GTNNAC	7 cut(s)	304, 874, 1253, 1450, 1496, 1900, 2074
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	5 cut(s)	526, 1374, 2138, 2156, 2324
HpyCH4III	ACNGT	4 cut(s)	566, 1458, 1925, 2200
HpyCH4IV	ACGT	3 cut(s)	978, 1474, 1713
HpyF10VI	GCNNNNNNNGC	8 cut(s)	255, 893, 1216, 1225, 1387, 1633, 1834, 2251
HpyF3I	CTNAG	9 cut(s)	60, 192, 425, 450, 488, 516, 614, 647, 1613
HpySE526I	ACGT	3 cut(s)	978, 1474, 1713
HspAI	GCGC	2 cut(s)	469, 1672
Ksp22I	TGATCA	3 cut(s)	18, 289, 1062
Kzo9I	GATC	9 cut(s)	18, 67, 289, 313, 1062, 1906, 2034, 2275, 2301
LguI	GCTCTTC	1 cut(s)	844
LmnI	GCTCC	5 cut(s)	466, 513, 712, 880, 982
Lsp1109I	GCAGC	4 cut(s)	691, 801, 1291, 1762
MaeI	CTAG	4 cut(s)	740, 1140, 1578, 1995
MaeII	ACGT	3 cut(s)	978, 1474, 1713
MaeIII	GTNAC	7 cut(s)	260, 1030, 1397, 1408, 1458, 1706, 2137
MalI	GATC	9 cut(s)	20, 69, 291, 315, 1064, 1908, 2036, 2277, 2303
MbiI	CCGCTC	1 cut(s)	714
MboI	GATC	9 cut(s)	18, 67, 289, 313, 1062, 1906, 2034, 2275, 2301
MboII	GAAGA	6 cut(s)	242, 340, 343, 710, 831, 2311
MhlI	GDGCHC	3 cut(s)	171, 1498, 2314
MlsI	TGGCCA	2 cut(s)	588, 2229
MluCI	AATT	9 cut(s)	4, 115, 483, 591, 654, 905, 1594, 1838, 2211
MluNI	TGGCCA	2 cut(s)	588, 2229
MlyI	GAGTC	2 cut(s)	658, 1541
MmeI	TCCRAC	3 cut(s)	399, 811, 2182
Mox20I	TGGCCA	2 cut(s)	588, 2229
Mph1103I	ATGCAT	1 cut(s)	1212
MroXI	GAANNNNTTC	1 cut(s)	838
MscI	TGGCCA	2 cut(s)	588, 2229
MseI	TTAA	5 cut(s)	384, 1586, 1841, 1938, 2262
MslI	CAYNNNNRTG	8 cut(s)	78, 270, 402, 564, 1157, 1501, 1914, 1979
Msp20I	TGGCCA	2 cut(s)	588, 2229
MspA1I	CMGCKG	3 cut(s)	1170, 1627, 1869
MspI	CCGG	5 cut(s)	207, 250, 282, 735, 1354
MspR9I	CCNGG	6 cut(s)	207, 208, 585, 746, 878, 1015
Mva1269I	GAATGC	3 cut(s)	395, 631, 784
MvaI	CCWGG	4 cut(s)	585, 746, 878, 1015
MwoI	GCNNNNNNNGC	8 cut(s)	255, 893, 1216, 1225, 1387, 1633, 1834, 2251
NciI	CCSGG	2 cut(s)	207, 208
NcoI	CCATGG	1 cut(s)	1887
NdeII	GATC	9 cut(s)	18, 67, 289, 313, 1062, 1906, 2034, 2275, 2301
NlaIV	GGNNCC	3 cut(s)	88, 1183, 1242
NmeAIII	GCCGAG	1 cut(s)	1240
NmuCI	GTSAC	3 cut(s)	260, 1408, 1706
NsiI	ATGCAT	1 cut(s)	1212
NspI	RCATGY	5 cut(s)	872, 1214, 1286, 1612, 1978
OliI	CACNNNNGTG	4 cut(s)	78, 564, 1501, 1914
PaeI	GCATGC	3 cut(s)	1214, 1286, 1612
PagI	TCATGA	1 cut(s)	2058
PciI	ACATGT	1 cut(s)	868
PciSI	GCTCTTC	1 cut(s)	844
PctI	GAATGC	3 cut(s)	395, 631, 784
PdmI	GAANNNNTTC	1 cut(s)	838
PfeI	GAWTC	4 cut(s)	374, 1105, 2087, 2205
PflFI	GACNNNGTC	2 cut(s)	299, 2150
PflMI	CCANNNNNTGG	1 cut(s)	370
PkrI	GCNGC	5 cut(s)	706, 791, 1172, 1281, 1777
PleI	GAGTC	2 cut(s)	657, 1540
PpsI	GAGTC	2 cut(s)	657, 1540
PscI	ACATGT	1 cut(s)	868
Psp6I	CCWGG	4 cut(s)	583, 744, 876, 1013
PspFI	CCCAGC	1 cut(s)	353
PspGI	CCWGG	4 cut(s)	583, 744, 876, 1013
PspN4I	GGNNCC	3 cut(s)	88, 1183, 1242
PspPI	GGNCC	5 cut(s)	421, 572, 687, 1172, 2330
PsyI	GACNNNGTC	2 cut(s)	299, 2150
PvuII	CAGCTG	1 cut(s)	1869
RsaI	GTAC	5 cut(s)	661, 989, 1012, 1195, 2075
RsaNI	GTAC	5 cut(s)	660, 988, 1011, 1194, 2074
RseI	CAYNNNNRTG	8 cut(s)	78, 270, 402, 564, 1157, 1501, 1914, 1979
SalI	GTCGAC	1 cut(s)	302
SapI	GCTCTTC	1 cut(s)	844
SaqAI	TTAA	5 cut(s)	384, 1586, 1841, 1938, 2262
SatI	GCNGC	5 cut(s)	705, 790, 1171, 1280, 1776
Sau3AI	GATC	9 cut(s)	18, 67, 289, 313, 1062, 1906, 2034, 2275, 2301
Sau96I	GGNCC	5 cut(s)	421, 572, 687, 1172, 2330
SchI	GAGTC	2 cut(s)	658, 1541
ScrFI	CCNGG	6 cut(s)	207, 208, 585, 746, 878, 1015
SduI	GDGCHC	3 cut(s)	171, 1498, 2314
SinI	GGWCC	1 cut(s)	421
SmaI	CCCGGG	1 cut(s)	208
SmiMI	CAYNNNNRTG	8 cut(s)	78, 270, 402, 564, 1157, 1501, 1914, 1979
SmlI	CTYRAG	1 cut(s)	1256
SmoI	CTYRAG	1 cut(s)	1256
SphI	GCATGC	3 cut(s)	1214, 1286, 1612
Sse9I	AATT	9 cut(s)	4, 115, 483, 591, 654, 905, 1594, 1838, 2211
SsiI	CCGC	3 cut(s)	712, 1170, 1627
SspMI	CTAG	4 cut(s)	740, 1140, 1578, 1995
StyD4I	CCNGG	6 cut(s)	205, 206, 583, 744, 876, 1013
StyI	CCWWGG	3 cut(s)	1404, 1887, 1944
TaaI	ACNGT	4 cut(s)	566, 1458, 1925, 2200
TaiI	ACGT	3 cut(s)	981, 1477, 1716
TaqI	TCGA	9 cut(s)	201, 303, 631, 652, 728, 803, 813, 1108, 1308
TasI	AATT	9 cut(s)	4, 115, 483, 591, 654, 905, 1594, 1838, 2211
TatI	WGTACW	2 cut(s)	659, 987
TauI	GCSGC	1 cut(s)	1173
TfiI	GAWTC	4 cut(s)	374, 1105, 2087, 2205
Tru1I	TTAA	5 cut(s)	384, 1586, 1841, 1938, 2262
Tru9I	TTAA	5 cut(s)	384, 1586, 1841, 1938, 2262
TscAI	CASTG	7 cut(s)	85, 265, 1674, 1682, 1856, 1884, 1930
TseFI	GTSAC	3 cut(s)	260, 1408, 1706
TseI	GCWGC	4 cut(s)	704, 789, 1279, 1775
Tsp45I	GTSAC	3 cut(s)	260, 1408, 1706
TspGWI	ACGGA	6 cut(s)	337, 1194, 1238, 1256, 1926, 2015
TspMI	CCCGGG	1 cut(s)	206
TspRI	CASTG	7 cut(s)	85, 265, 1674, 1682, 1856, 1884, 1930
Tth111I	GACNNNGTC	2 cut(s)	299, 2150
Van91I	CCANNNNNTGG	1 cut(s)	370
VneI	GTGCAC	1 cut(s)	1494
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	4 cut(s)	4, 591, 654, 1594
XbaI	TCTAGA	1 cut(s)	739
XceI	RCATGY	5 cut(s)	872, 1214, 1286, 1612, 1978
XcmI	CCANNNNNNNNNTGG	2 cut(s)	566, 697
XmaI	CCCGGG	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	838
XspI	CTAG	4 cut(s)	740, 1140, 1578, 1995
Zsp2I	ATGCAT	1 cut(s)	1212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.