MD01G1200000.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0014806
Physical Location & Seq
Reverse (-)
29695779 .. 29697548
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1200000.v1.1.491

Sequence Viewer

Length: 1770 bp
ATGCGAGGTTCCTTAGAGTTCACTCTTTCGAAACTATTACCACAATGCACGTTCAAACAGTTGAAGCAAATCCATGTCCTCATTGTTACTACCTCTCTCAACCAAAACATCCAAATTTTCTCAAAATTTCTCCGGCGGAGCACCGAGTTTGGATCCATGGAGTATCCCAATCTCATATTTTCCCAACTGGGTCCTCAACTCAGTAACAACATTGTGATTCAGAACGCCATGATCAGAGGGTACGATATCAACGGTCCGTTCGATCAATGCGTCTCAGTGTTTGATGAAATGCCTCTGAGAGGAATCAAACCCCATAACTTCACCTACCCATATGTCTTGAACTCCTGCTCTAAATTGGGTTGGTACGGAAAAGGAAAACAAGTGCAGTGCCATATTGTAAAGCATGGGTTCGAGTCAAATCTGGCGGTTGCTAATGCCCTTTTCAATATGTATGTTAAAATGCTGGATTCCTGCGACTCTGGTGTTGTAAATTATAGGTCTTTGAATGATGCCCGCAAGGTGTTCGATTATATGCGTGTGAAACCTGTAGAATTGTGGAACCGCATGATCTCACGGTATGCGAGCGGTGGTGATGTTCAGAGTGCGAGAAAGTTGTTCGATGATATGCCTGACAAGGACGTCGTTTCATGGAATTCTATGATTTCCGGTTATGCTGAAGTAAGAGATGTAGGCAGTGCAAGTGATTTGTTTGAGAGGATGCCGGAAAAGGATGTCATCTCGTGGACATTGATGATCGGAGTATATGCCAATGCCGGAGACCTTAGAACGGCAAGAAAGTTTTTCAACACAATGCCGTGCAAGAATGTGGTGTCTTGGAACAGTATGATATCAAGTTACAACCAGCATAGACAATATGAAGAAGCATTGGATGTTTTTGTGCAAATGCATTCGGAAGGTGTGGTTCCGGATGGATATACATTTGTTTCGGTTCTGTCAGCTTGTTCCCACTTGGGTGCCCTAGATTTCGGAAAATGGACACACAGCTTGATAGAAGATTGGTCTCGTTTCGGAACCATTTCAGGGACTGCCCTTATCGACATGTATGCGAAGTGCGGGGACATAAACAGAGCGTTTGCTCTTTTTATCAAGATAGGAAAGAGGGATGTATTTTGTTGGAATGTTATGATTAGATCGGTCGCTATCCACGGAAGAGCAGAAGATGCCGTCAAGATATACTCATTGATGCAGAAGGAAGGGTTGAAGCCGAATGACTTCACGTTCACCGCTGCTCTCTTCGCTTGTAGCCATGGAGGCTTGGTAGAAGAAGGCGAAAGAATCTTCCATTCCATGGATAAAGAATTTGGGATTGTGCCAAAGCTTGAGCATTTTGGCTGCCTAATCGATTTGCTGAGCCGAAATGGTCGGGTGGAGGAAGCACTACGTATGGTGAAGGAAATGCCGTATAACCCCGACATTGCTATATGGGGAACATTGCTTGGGGGTTGCAGAGAAACTAGTCACCTTAAGTTGGCAGAGGAAGTGATCGAGAAGGCTACTGAGTTGGAAACAGACGAATCCGGGGTTTATGTCCTCTTGGCTAACATGCGTGCCTCGGCAGGGCAATGGCCAGAGGCTCAAAGTGCAAGAGAGAAAATGGAAGAAAAGAAGATTTGGAAGAACACAGGACGCAGTCATGTTTATGCCTCTAATGGAACCCAGGAGCCCGACATCGAAAGCCACTCAAAATATAGAGAGAAGGTAGAACAAATTAGATTCACTTCAAACCAATGTGAGCCTCAAAAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

590

Amino Acids

66.9

Weight (kDa)

6.59

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 70 - 118 1.3e-07 PPR repeat family
PPR_2 PF13041 212 - 244 5.9e-06 PPR repeat family
PPR PF01535 215 - 244 2.4e-06 PPR repeat
PPR_2 PF13041 274 - 322 1.6e-12 PPR repeat family
PPR PF01535 277 - 307 2.5e-08 PPR repeat
PPR_2 PF13041 374 - 421 8.5e-11 PPR repeat family
E_motif PF20431 494 - 553 5.3e-08 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014806)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29410
malus_domestica MD01G1200000.v1.1 MD07G1267900.v1.1
prunus_persica Prupe.2G293600_v2.0.a1
pyrus_communis pycom01g21010 pycom07g24550
rosa_chinensis RchiOBHm_Chr1g0377181 RchiOBHm_Chr1g0377191
rosa_laevigata RLG00000026538
rosa_multiflora Rmu_ssc0000155.1_g000013 Rmu_ssc0000155.1_g000014
rosa_roxburghii Rroxscaffold_4G00281400
rosa_rugosa Rorug01G0401900
rosa_samantha Rh1AG419300 Rh1BG378400 Rh1CG392400
rosa_wichuraiana Rw1G036780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 638
AatII GACGTC 1 cut(s) 642
AccB1I GGYRCC 1 cut(s) 974
AccB7I CCANNNNNTGG 1 cut(s) 1309
AccBSI CCGCTC 1 cut(s) 585
AccIII TCCGGA 1 cut(s) 925
AciI CCGC 7 cut(s) 136, 425, 514, 562, 585, 1074, 1245
AclWI GGATC 2 cut(s) 147, 160
AcoI YGGCCR 1 cut(s) 1586
AcsI RAATTY 4 cut(s) 114, 125, 652, 1319
AcuI CTGAAG 1 cut(s) 696
AcyI GRCGYC 1 cut(s) 639
AfaI GTAC 2 cut(s) 242, 365
AfiI CCNNNNNNNGG 6 cut(s) 299, 787, 1041, 1309, 1489, 1578
AflII CTTAAG 1 cut(s) 1484
AflIII ACRYGT 1 cut(s) 1059
AgsI TTSAA 8 cut(s) 55, 64, 340, 445, 505, 805, 1222, 1743
AhlI ACTAGT 1 cut(s) 1475
AjnI CCWGG 1 cut(s) 1677
AleI CACNNNNGTG 1 cut(s) 972
AluBI AGCT 3 cut(s) 959, 1005, 1339
AluI AGCT 3 cut(s) 959, 1005, 1339
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 3 cut(s) 277, 771, 1026
AlwI GGATC 2 cut(s) 147, 160
AlwNI CAGNNNCTG 1 cut(s) 1046
Aor13HI TCCGGA 1 cut(s) 925
AoxI GGCC 1 cut(s) 1586
ApeKI GCWGC 2 cut(s) 1247, 1353
ApoI RAATTY 4 cut(s) 114, 125, 652, 1319
Asp700I GAANNNNTTC 2 cut(s) 1036, 1232
AspS9I GGNCC 2 cut(s) 191, 254
AsuC2I CCSGG 1 cut(s) 1540
AsuHPI GGTGA 5 cut(s) 313, 602, 1234, 1420, 1472
AsuII TTCGAA 1 cut(s) 29
AvaII GGWCC 2 cut(s) 191, 254
BaeGI GKGCMC 1 cut(s) 979
BalI TGGCCA 1 cut(s) 1588
BamHI GGATCC 1 cut(s) 152
BanI GGYRCC 1 cut(s) 974
BanII GRGCYC 1 cut(s) 1686
BauI CACGAG 1 cut(s) 739
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 2 cut(s) 1234, 1340
BccI CCATC 1 cut(s) 923
BceAI ACGGC 4 cut(s) 799, 804, 1169, 1405
BcgI CGANNNNNNTGC 4 cut(s) 505, 539, 1046, 1080
BciT130I CCWGG 1 cut(s) 1679
BciVI GTATCC 1 cut(s) 174
BclI TGATCA 1 cut(s) 231
BcnI CCSGG 1 cut(s) 1540
BcoDI GTCTC 3 cut(s) 277, 771, 1026
BcuI ACTAGT 1 cut(s) 1475
BfaI CTAG 2 cut(s) 980, 1476
BfmI CTRYAG 1 cut(s) 546
BfrI CTTAAG 1 cut(s) 1484
BfuI GTATCC 1 cut(s) 174
BglI GCCNNNNNGGC 1 cut(s) 1272
BisI GCNGC 2 cut(s) 1248, 1354
BlpI GCTNAGC 1 cut(s) 1370
BlsI GCNGC 2 cut(s) 1249, 1355
Bme1390I CCNGG 2 cut(s) 1540, 1679
Bme18I GGWCC 2 cut(s) 191, 254
BmgT120I GGNCC 2 cut(s) 191, 254
BmiI GGNNCC 9 cut(s) 10, 154, 192, 560, 924, 976, 1033, 1675, 1683
BmrFI CCNGG 2 cut(s) 1540, 1679
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 4 cut(s) 499, 708, 1171, 1194
BmuI ACTGGG 1 cut(s) 197
Bpu1102I GCTNAGC 1 cut(s) 1370
Bpu14I TTCGAA 1 cut(s) 29
BpuEI CTTGAG 1 cut(s) 1361
BpuMI CCSGG 1 cut(s) 1540
Bsa29I ATCGAT 1 cut(s) 1362
BsaAI YACGTR 1 cut(s) 1403
BsaHI GRCGYC 1 cut(s) 639
BsaI GGTCTC 2 cut(s) 771, 1026
BsaJI CCNNGG 7 cut(s) 156, 1165, 1267, 1308, 1539, 1572, 1677
BsaWI WCCGGW 2 cut(s) 665, 925
BsaXI ACNNNNNCTCC 2 cut(s) 1263, 1293
Bsc4I CCNNNNNNNGG 6 cut(s) 299, 787, 1041, 1309, 1489, 1578
Bse1I ACTGG 1 cut(s) 192
Bse3DI GCAATG 3 cut(s) 1434, 1451, 1589
BseAI TCCGGA 1 cut(s) 925
BseBI CCWGG 1 cut(s) 1679
BseCI ATCGAT 1 cut(s) 1362
BseDI CCNNGG 7 cut(s) 156, 1165, 1267, 1308, 1539, 1572, 1677
BseGI GGATG 6 cut(s) 108, 723, 736, 895, 934, 1129
BseLI CCNNNNNNNGG 6 cut(s) 299, 787, 1041, 1309, 1489, 1578
BseMI GCAATG 3 cut(s) 1434, 1451, 1589
BseMII CTCAG 5 cut(s) 214, 287, 288, 1361, 1509
BseNI ACTGG 1 cut(s) 192
BseSI GKGCMC 1 cut(s) 979
BseXI GCAGC 2 cut(s) 1234, 1340
BsgI GTGCAG 1 cut(s) 404
Bsh1285I CGRYCG 1 cut(s) 1158
BshFI GGCC 1 cut(s) 1588
BshNI GGYRCC 1 cut(s) 974
BshVI ATCGAT 1 cut(s) 1362
BsiEI CGRYCG 1 cut(s) 1158
BsiHKAI GWGCWC 1 cut(s) 143
BsiSI CCGG 6 cut(s) 133, 666, 722, 774, 926, 1539
BslFI GGGAC 2 cut(s) 1057, 1091
BslI CCNNNNNNNGG 6 cut(s) 299, 787, 1041, 1309, 1489, 1578
BsmAI GTCTC 3 cut(s) 277, 771, 1026
BsmBI CGTCTC 1 cut(s) 277
BsmFI GGGAC 2 cut(s) 1057, 1091
BsmI GAATGC 1 cut(s) 907
BsnI GGCC 1 cut(s) 1588
Bso31I GGTCTC 2 cut(s) 771, 1026
Bsp119I TTCGAA 1 cut(s) 29
Bsp1286I GDGCHC 3 cut(s) 143, 979, 1686
Bsp13I TCCGGA 1 cut(s) 925
Bsp143I GATC 7 cut(s) 152, 231, 262, 567, 753, 1151, 1503
Bsp1720I GCTNAGC 1 cut(s) 1370
Bsp19I CCATGG 3 cut(s) 156, 1267, 1308
BspACI CCGC 7 cut(s) 136, 425, 514, 562, 585, 1074, 1245
BspANI GGCC 1 cut(s) 1588
BspCNI CTCAG 5 cut(s) 213, 287, 288, 1362, 1510
BspDI ATCGAT 1 cut(s) 1362
BspEI TCCGGA 1 cut(s) 925
BspLI GGNNCC 9 cut(s) 10, 154, 192, 560, 924, 976, 1033, 1675, 1683
BspPI GGATC 2 cut(s) 147, 160
BspQI GCTCTTC 1 cut(s) 1165
BspT104I TTCGAA 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 974
BspTI CTTAAG 1 cut(s) 1484
BspTNI GGTCTC 2 cut(s) 771, 1026
BsrBI CCGCTC 1 cut(s) 585
BsrDI GCAATG 3 cut(s) 1434, 1451, 1589
BsrI ACTGG 1 cut(s) 192
BssECI CCNNGG 7 cut(s) 156, 1165, 1267, 1308, 1539, 1572, 1677
BssMI GATC 7 cut(s) 152, 231, 262, 567, 753, 1151, 1503
BssNI GRCGYC 1 cut(s) 639
BssSI CACGAG 1 cut(s) 739
BssT1I CCWWGG 3 cut(s) 156, 1267, 1308
Bst2BI CACGAG 1 cut(s) 739
Bst2UI CCWGG 1 cut(s) 1679
Bst4CI ACNGT 4 cut(s) 60, 254, 576, 842
Bst6I CTCTTC 2 cut(s) 1165, 1259
BstACI GRCGYC 1 cut(s) 639
BstAFI CTTAAG 1 cut(s) 1484
BstAPI GCANNNNNTGC 1 cut(s) 1181
BstBAI YACGTR 1 cut(s) 1403
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 3 cut(s) 514, 583, 1569
BstDEI CTNAG 7 cut(s) 13, 200, 274, 296, 782, 1370, 1518
BstDSI CCRYGG 4 cut(s) 156, 1165, 1267, 1308
BstENI CCTNNNNNAGG 1 cut(s) 297
BstF5I GGATG 6 cut(s) 108, 723, 736, 895, 934, 1129
BstKTI GATC 7 cut(s) 155, 234, 265, 570, 756, 1154, 1506
BstMAI GTCTC 3 cut(s) 277, 771, 1026
BstMBI GATC 7 cut(s) 152, 231, 262, 567, 753, 1151, 1503
BstMCI CGRYCG 1 cut(s) 1158
BstMWI GCNNNNNNNGC 4 cut(s) 1181, 1256, 1272, 1601
BstNI CCWGG 1 cut(s) 1679
BstNSI RCATGY 2 cut(s) 1063, 1567
BstSCI CCNGG 2 cut(s) 1538, 1677
BstSFI CTRYAG 1 cut(s) 546
BstSLI GKGCMC 1 cut(s) 979
BstSNI TACGTA 1 cut(s) 1403
BstV1I GCAGC 2 cut(s) 1234, 1340
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
Bsu15I ATCGAT 1 cut(s) 1362
BsuI GTATCC 1 cut(s) 174
BsuRI GGCC 1 cut(s) 1588
BsuTUI ATCGAT 1 cut(s) 1362
BtgI CCRYGG 4 cut(s) 156, 1165, 1267, 1308
BtsCI GGATG 6 cut(s) 108, 723, 736, 895, 934, 1129
BtsI GCAGTG 2 cut(s) 392, 700
BtsIMutI CAGTG 3 cut(s) 282, 392, 700
Cac8I GCNNGC 3 cut(s) 514, 583, 1569
CaiI CAGNNNCTG 1 cut(s) 1046
Cfr13I GGNCC 2 cut(s) 191, 254
ClaI ATCGAT 1 cut(s) 1362
CpoI CGGWCCG 1 cut(s) 254
CseI GACGC 2 cut(s) 259, 1656
Csp6I GTAC 2 cut(s) 241, 364
CspI CGGWCCG 1 cut(s) 254
CviQI GTAC 2 cut(s) 241, 364
DdeI CTNAG 7 cut(s) 13, 200, 274, 296, 782, 1370, 1518
DpnI GATC 7 cut(s) 154, 233, 264, 569, 755, 1153, 1505
DpnII GATC 7 cut(s) 152, 231, 262, 567, 753, 1151, 1503
DrdI GACNNNNNNGTC 1 cut(s) 638
DseDI GACNNNNNNGTC 1 cut(s) 638
EaeI YGGCCR 1 cut(s) 1586
Eam1104I CTCTTC 2 cut(s) 1165, 1259
EarI CTCTTC 2 cut(s) 1165, 1259
EciI GGCGGA 1 cut(s) 151
Eco105I TACGTA 1 cut(s) 1403
Eco130I CCWWGG 3 cut(s) 156, 1267, 1308
Eco24I GRGCYC 1 cut(s) 1686
Eco31I GGTCTC 2 cut(s) 771, 1026
Eco32I GATATC 2 cut(s) 247, 849
Eco47I GGWCC 2 cut(s) 191, 254
Eco57I CTGAAG 1 cut(s) 696
EcoNI CCTNNNNNAGG 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 652
EcoRII CCWGG 1 cut(s) 1677
EcoRV GATATC 2 cut(s) 247, 849
EcoT14I CCWWGG 3 cut(s) 156, 1267, 1308
EcoT22I ATGCAT 1 cut(s) 909
EcoT38I GRGCYC 1 cut(s) 1686
ErhI CCWWGG 3 cut(s) 156, 1267, 1308
Esp3I CGTCTC 1 cut(s) 277
FaqI GGGAC 2 cut(s) 1057, 1091
FauI CCCGC 2 cut(s) 521, 1067
FauNDI CATATG 1 cut(s) 331
FbaI TGATCA 1 cut(s) 231
Fnu4HI GCNGC 2 cut(s) 1248, 1354
FokI GGATG 6 cut(s) 95, 730, 743, 902, 941, 1136
FriOI GRGCYC 1 cut(s) 1686
Fsp4HI GCNGC 2 cut(s) 1248, 1354
FspBI CTAG 2 cut(s) 980, 1476
GluI GCNGC 2 cut(s) 1248, 1354
HaeIII GGCC 1 cut(s) 1588
HapII CCGG 6 cut(s) 133, 666, 722, 774, 926, 1539
HgaI GACGC 2 cut(s) 259, 1656
Hin1I GRCGYC 1 cut(s) 639
HindIII AAGCTT 1 cut(s) 1337
HinfI GANTC 8 cut(s) 217, 303, 413, 467, 476, 1296, 1535, 1734
HpaII CCGG 6 cut(s) 133, 666, 722, 774, 926, 1539
HphI GGTGA 5 cut(s) 313, 602, 1234, 1420, 1472
Hpy166II GTNNAC 3 cut(s) 21, 744, 1242
Hpy188I TCNGA 8 cut(s) 222, 236, 297, 600, 758, 913, 989, 1031
Hpy188III TCNNGA 5 cut(s) 337, 926, 1108, 1189, 1507
Hpy8I GTNNAC 3 cut(s) 21, 744, 1242
Hpy99I CGWCG 1 cut(s) 644
HpyAV CCTTC 7 cut(s) 908, 1204, 1208, 1280, 1405, 1504, 1711
HpyCH4III ACNGT 4 cut(s) 60, 254, 576, 842
HpyCH4IV ACGT 4 cut(s) 50, 639, 1238, 1402
HpyCH4V TGCA 9 cut(s) 48, 385, 698, 819, 901, 907, 1207, 1467, 1604
HpyF10VI GCNNNNNNNGC 4 cut(s) 1181, 1256, 1272, 1601
HpyF3I CTNAG 7 cut(s) 13, 200, 274, 296, 782, 1370, 1518
HpySE526I ACGT 4 cut(s) 50, 639, 1238, 1402
Hsp92I GRCGYC 1 cut(s) 639
Kpn2I TCCGGA 1 cut(s) 925
Ksp22I TGATCA 1 cut(s) 231
Kzo9I GATC 7 cut(s) 152, 231, 262, 567, 753, 1151, 1503
LguI GCTCTTC 1 cut(s) 1165
LmnI GCTCC 2 cut(s) 138, 1681
Lsp1109I GCAGC 2 cut(s) 1234, 1340
LweI GCATC 4 cut(s) 499, 708, 1171, 1194
MaeI CTAG 2 cut(s) 980, 1476
MaeII ACGT 4 cut(s) 50, 639, 1238, 1402
MaeIII GTNAC 4 cut(s) 85, 203, 854, 1478
MalI GATC 7 cut(s) 154, 233, 264, 569, 755, 1153, 1505
MbiI CCGCTC 1 cut(s) 585
MboI GATC 7 cut(s) 152, 231, 262, 567, 753, 1151, 1503
MflI RGATCY 1 cut(s) 152
MhlI GDGCHC 3 cut(s) 143, 979, 1686
MlsI TGGCCA 1 cut(s) 1588
MluCI AATT 8 cut(s) 114, 125, 353, 490, 551, 652, 1319, 1728
MluNI TGGCCA 1 cut(s) 1588
MlyI GAGTC 2 cut(s) 422, 470
MmeI TCCRAC 2 cut(s) 1115, 1503
Mox20I TGGCCA 1 cut(s) 1588
Mph1103I ATGCAT 1 cut(s) 909
MroI TCCGGA 1 cut(s) 925
MroXI GAANNNNTTC 2 cut(s) 1036, 1232
MscI TGGCCA 1 cut(s) 1588
MseI TTAA 2 cut(s) 456, 1485
MslI CAYNNNNRTG 2 cut(s) 972, 1659
Msp20I TGGCCA 1 cut(s) 1588
MspA1I CMGCKG 1 cut(s) 1247
MspCI CTTAAG 1 cut(s) 1484
MspI CCGG 6 cut(s) 133, 666, 722, 774, 926, 1539
MspR9I CCNGG 2 cut(s) 1540, 1679
Mva1269I GAATGC 1 cut(s) 907
MvaI CCWGG 1 cut(s) 1679
MwoI GCNNNNNNNGC 4 cut(s) 1181, 1256, 1272, 1601
NciI CCSGG 1 cut(s) 1540
NcoI CCATGG 3 cut(s) 156, 1267, 1308
NdeI CATATG 1 cut(s) 331
NdeII GATC 7 cut(s) 152, 231, 262, 567, 753, 1151, 1503
NlaIV GGNNCC 9 cut(s) 10, 154, 192, 560, 924, 976, 1033, 1675, 1683
NmeAIII GCCGAG 1 cut(s) 1553
NmuCI GTSAC 1 cut(s) 1478
NsiI ATGCAT 1 cut(s) 909
NspI RCATGY 2 cut(s) 1063, 1567
NspV TTCGAA 1 cut(s) 29
OliI CACNNNNGTG 1 cut(s) 972
PciI ACATGT 1 cut(s) 1059
PciSI GCTCTTC 1 cut(s) 1165
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 267
PctI GAATGC 1 cut(s) 907
PdmI GAANNNNTTC 2 cut(s) 1036, 1232
PfeI GAWTC 6 cut(s) 217, 303, 467, 1296, 1535, 1734
PflFI GACNNNGTC 1 cut(s) 1650
PflMI CCANNNNNTGG 1 cut(s) 1309
PkrI GCNGC 2 cut(s) 1249, 1355
PleI GAGTC 2 cut(s) 421, 470
PpsI GAGTC 2 cut(s) 421, 470
Ppu21I YACGTR 1 cut(s) 1403
PpuMI RGGWCCY 1 cut(s) 191
PscI ACATGT 1 cut(s) 1059
Psp5II RGGWCCY 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 1677
PspGI CCWGG 1 cut(s) 1677
PspN4I GGNNCC 9 cut(s) 10, 154, 192, 560, 924, 976, 1033, 1675, 1683
PspPI GGNCC 2 cut(s) 191, 254
PspPPI RGGWCCY 1 cut(s) 191
PstNI CAGNNNCTG 1 cut(s) 1046
PsuI RGATCY 1 cut(s) 152
PsyI GACNNNGTC 1 cut(s) 1650
RsaI GTAC 2 cut(s) 242, 365
RsaNI GTAC 2 cut(s) 241, 364
RseI CAYNNNNRTG 2 cut(s) 972, 1659
Rsr2I CGGWCCG 1 cut(s) 254
RsrII CGGWCCG 1 cut(s) 254
SapI GCTCTTC 1 cut(s) 1165
SaqAI TTAA 2 cut(s) 456, 1485
SatI GCNGC 2 cut(s) 1248, 1354
Sau3AI GATC 7 cut(s) 152, 231, 262, 567, 753, 1151, 1503
Sau96I GGNCC 2 cut(s) 191, 254
SchI GAGTC 2 cut(s) 422, 470
ScrFI CCNGG 2 cut(s) 1540, 1679
SduI GDGCHC 3 cut(s) 143, 979, 1686
SfaNI GCATC 4 cut(s) 499, 708, 1171, 1194
SfcI CTRYAG 1 cut(s) 546
SfuI TTCGAA 1 cut(s) 29
SinI GGWCC 2 cut(s) 191, 254
SmiMI CAYNNNNRTG 2 cut(s) 972, 1659
SmlI CTYRAG 2 cut(s) 1340, 1484
SmoI CTYRAG 2 cut(s) 1340, 1484
SnaBI TACGTA 1 cut(s) 1403
SpeI ACTAGT 1 cut(s) 1475
Sse9I AATT 8 cut(s) 114, 125, 353, 490, 551, 652, 1319, 1728
SsiI CCGC 7 cut(s) 136, 425, 514, 562, 585, 1074, 1245
SspMI CTAG 2 cut(s) 980, 1476
StyD4I CCNGG 2 cut(s) 1538, 1677
StyI CCWWGG 3 cut(s) 156, 1267, 1308
TaaI ACNGT 4 cut(s) 60, 254, 576, 842
TaiI ACGT 4 cut(s) 53, 642, 1241, 1405
TaqI TCGA 9 cut(s) 29, 261, 411, 525, 618, 1056, 1362, 1506, 1692
TaqII GACCGA 1 cut(s) 1144
TasI AATT 8 cut(s) 114, 125, 353, 490, 551, 652, 1319, 1728
TfiI GAWTC 6 cut(s) 217, 303, 467, 1296, 1535, 1734
Tru1I TTAA 2 cut(s) 456, 1485
Tru9I TTAA 2 cut(s) 456, 1485
TscAI CASTG 3 cut(s) 282, 392, 700
TseFI GTSAC 1 cut(s) 1478
TseI GCWGC 2 cut(s) 1247, 1353
Tsp45I GTSAC 1 cut(s) 1478
TspDTI ATGAA 3 cut(s) 300, 636, 891
TspGWI ACGGA 3 cut(s) 246, 381, 1182
TspRI CASTG 3 cut(s) 282, 392, 700
Tth111I GACNNNGTC 1 cut(s) 1650
Van91I CCANNNNNTGG 1 cut(s) 1309
Vha464I CTTAAG 1 cut(s) 1484
VpaK11BI GGWCC 2 cut(s) 191, 254
XagI CCTNNNNNAGG 1 cut(s) 297
XapI RAATTY 4 cut(s) 114, 125, 652, 1319
XceI RCATGY 2 cut(s) 1063, 1567
XmnI GAANNNNTTC 2 cut(s) 1036, 1232
XspI CTAG 2 cut(s) 980, 1476
ZraI GACGTC 1 cut(s) 640
Zsp2I ATGCAT 1 cut(s) 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.