Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014806

Physical Location & Seq

Genomic Coordinates Reverse (-)

64204612 .. 64205332

Gene Structure 721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60076

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGAAAGAGGGATGTATTTTGTTGGAATGTTATGATTAGATCTGTAGCTATCCACGGAAGAACAGAAGACGCCATCAAGATGTACTCATTGATGCAAAAAAAAGGGTTGAAGCCAAATGACTTCACCTTCACTGCTGCTCTATTCGCTTGTAGCCATGGAGGCTTAGTAAAGGAAGGTGAAAGAATCTTCCATTCCATGGAGAGGGATTTTGGGGTTGAACCAAAACTCCAGCATTATGGCTGCATAATTAACCTACTGAGCCGAAACGGTCAGTTGGAGGAAGCAGTACGTCTATTTAAGGCAATGCCGTATATGCCTGACATAGCAATATGGGGAGCTTTGCTTGGCGGTTGCAGAGGTATAAGTCACCTTCAATTGGCAGAGGAAGTGATAGAGAAAGCTACAGGGTTGGAAGCAAATGAATCAGGAGTTTATGTGCTCTTGGCTAACATGCATGCCTCAGTAGGGCAATGGCCGGAGGCTCAAAGTGCAAGAGAAATGATGGAAGAAAAGAATATTTGGAAGAACACAGGGCATAGTCATGTTTATGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

186

Amino Acids

20.85

Weight (kDa)

6.71

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	4 - 51	1.8e-12	PPR repeat family
PPR	PF01535	8 - 37	6.4e-06	PPR repeat
E_motif	PF20431	124 - 183	1.7e-08	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014806)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g29410
malus_domestica	MD01G1200000.v1.1 MD07G1267900.v1.1
prunus_persica	Prupe.2G293600_v2.0.a1
pyrus_communis	pycom01g21010 pycom07g24550
rosa_chinensis	RchiOBHm_Chr1g0377181 RchiOBHm_Chr1g0377191
rosa_laevigata	RLG00000026538
rosa_multiflora	Rmu_ssc0000155.1_g000013 Rmu_ssc0000155.1_g000014
rosa_roxburghii	Rroxscaffold_4G00281400
rosa_rugosa	Rorug01G0401900
rosa_samantha	Rh1AG419300 Rh1BG378400 Rh1CG392400
rosa_wichuraiana	Rw1G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	199
AciI	CCGC	1 cut(s)	351
AcoI	YGGCCR	1 cut(s)	476
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	2 cut(s)	86, 291
AfiI	CCNNNNNNNGG	4 cut(s)	199, 204, 379, 468
AgsI	TTSAA	3 cut(s)	112, 221, 377
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	3 cut(s)	50, 341, 404
AluI	AGCT	3 cut(s)	50, 341, 404
Alw21I	GWGCWC	1 cut(s)	444
AoxI	GGCC	1 cut(s)	476
ApeKI	GCWGC	2 cut(s)	137, 243
AsuHPI	GGTGA	3 cut(s)	118, 191, 362
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	2 cut(s)	124, 230
BccI	CCATC	2 cut(s)	83, 499
BceAI	ACGGC	1 cut(s)	295
BfmI	CTRYAG	2 cut(s)	45, 405
BglI	GCCNNNNNGGC	1 cut(s)	162
BglII	AGATCT	1 cut(s)	41
BisI	GCNGC	2 cut(s)	138, 244
BlsI	GCNGC	2 cut(s)	139, 245
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	215
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	3 cut(s)	55, 157, 198
BsaXI	ACNNNNNCTCC	6 cut(s)	153, 183, 213, 243, 423, 453
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 204, 379, 468
Bse3DI	GCAATG	2 cut(s)	312, 479
BseDI	CCNNGG	3 cut(s)	55, 157, 198
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	4 cut(s)	199, 204, 379, 468
BseMI	GCAATG	2 cut(s)	312, 479
BseMII	CTCAG	2 cut(s)	251, 477
BseXI	GCAGC	2 cut(s)	124, 230
BshFI	GGCC	1 cut(s)	478
BsiHKAI	GWGCWC	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	479
BslI	CCNNNNNNNGG	4 cut(s)	199, 204, 379, 468
BsnI	GGCC	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	1 cut(s)	41
Bsp19I	CCATGG	2 cut(s)	157, 198
BspACI	CCGC	1 cut(s)	351
BspANI	GGCC	1 cut(s)	478
BspCNI	CTCAG	2 cut(s)	252, 476
BsrDI	GCAATG	2 cut(s)	312, 479
BssECI	CCNNGG	3 cut(s)	55, 157, 198
BssMI	GATC	1 cut(s)	41
BssNI	GRCGYC	1 cut(s)	72
BssT1I	CCWWGG	2 cut(s)	157, 198
Bst4CI	ACNGT	1 cut(s)	272
BstACI	GRCGYC	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	3 cut(s)	166, 260, 463
BstDSI	CCRYGG	3 cut(s)	55, 157, 198
BstF5I	GGATG	1 cut(s)	19
BstKTI	GATC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 162, 316, 491
BstNSI	RCATGY	2 cut(s)	457, 461
BstSFI	CTRYAG	2 cut(s)	45, 405
BstV1I	GCAGC	2 cut(s)	124, 230
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	41
BstXI	CCANNNNNNTGG	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	478
BtgI	CCRYGG	3 cut(s)	55, 157, 198
BtsCI	GGATG	1 cut(s)	19
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	459
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	2 cut(s)	85, 290
CviAII	CATG	5 cut(s)	158, 199, 454, 458, 545
CviQI	GTAC	2 cut(s)	85, 290
DdeI	CTNAG	3 cut(s)	166, 260, 463
DpnI	GATC	1 cut(s)	43
DpnII	GATC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	476
Eco130I	CCWWGG	2 cut(s)	157, 198
EcoT14I	CCWWGG	2 cut(s)	157, 198
EcoT22I	ATGCAT	1 cut(s)	459
ErhI	CCWWGG	2 cut(s)	157, 198
FaeI	CATG	5 cut(s)	161, 202, 457, 461, 548
FatI	CATG	5 cut(s)	157, 198, 453, 457, 544
Fnu4HI	GCNGC	2 cut(s)	138, 244
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	2 cut(s)	138, 244
GluI	GCNGC	2 cut(s)	138, 244
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	478
HapII	CCGG	1 cut(s)	479
HgaI	GACGC	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	5 cut(s)	161, 202, 457, 461, 548
HinfI	GANTC	2 cut(s)	186, 425
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	3 cut(s)	118, 191, 362
Hpy188III	TCNNGA	2 cut(s)	79, 429
HpyAV	CCTTC	3 cut(s)	139, 170, 383
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	5 cut(s)	97, 246, 357, 457, 494
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 162, 316, 491
HpyF3I	CTNAG	3 cut(s)	166, 260, 463
HpySE526I	ACGT	1 cut(s)	292
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	5 cut(s)	161, 202, 457, 461, 548
Kzo9I	GATC	1 cut(s)	41
LmnI	GCTCC	2 cut(s)	338, 559
LpnPI	CCDG	6 cut(s)	245, 333, 393, 414, 492, 519
Lsp1109I	GCAGC	2 cut(s)	124, 230
LweI	GCATC	1 cut(s)	84
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	1 cut(s)	43
MboI	GATC	1 cut(s)	41
MboII	GAAGA	5 cut(s)	72, 80, 181, 521, 538
MfeI	CAATTG	1 cut(s)	377
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	2 cut(s)	249, 377
MmeI	TCCRAC	3 cut(s)	5, 258, 393
MnlI	CCTC	8 cut(s)	3, 155, 198, 274, 353, 379, 472, 475
Mph1103I	ATGCAT	1 cut(s)	459
MseI	TTAA	2 cut(s)	252, 300
MslI	CAYNNNNRTG	3 cut(s)	80, 543, 549
MspI	CCGG	1 cut(s)	479
MunI	CAATTG	1 cut(s)	377
MwoI	GCNNNNNNNGC	4 cut(s)	146, 162, 316, 491
NcoI	CCATGG	2 cut(s)	157, 198
NdeII	GATC	1 cut(s)	41
NlaIII	CATG	5 cut(s)	161, 202, 457, 461, 548
NmuCI	GTSAC	1 cut(s)	368
NsiI	ATGCAT	1 cut(s)	459
NspI	RCATGY	2 cut(s)	457, 461
PaeI	GCATGC	1 cut(s)	461
PfeI	GAWTC	2 cut(s)	186, 425
PflMI	CCANNNNNTGG	1 cut(s)	199
PkrI	GCNGC	2 cut(s)	139, 245
PsuI	RGATCY	1 cut(s)	41
RsaI	GTAC	2 cut(s)	86, 291
RsaNI	GTAC	2 cut(s)	85, 290
RseI	CAYNNNNRTG	3 cut(s)	80, 543, 549
SaqAI	TTAA	2 cut(s)	252, 300
SatI	GCNGC	2 cut(s)	138, 244
Sau3AI	GATC	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	444
SetI	ASST	9 cut(s)	52, 131, 181, 258, 295, 343, 364, 375, 406
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	2 cut(s)	45, 405
SmiMI	CAYNNNNRTG	3 cut(s)	80, 543, 549
SphI	GCATGC	1 cut(s)	461
Sse9I	AATT	2 cut(s)	249, 377
SsiI	CCGC	1 cut(s)	351
SspI	AATATT	1 cut(s)	520
StyI	CCWWGG	2 cut(s)	157, 198
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	1 cut(s)	295
TasI	AATT	2 cut(s)	249, 377
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	2 cut(s)	186, 425
Tru1I	TTAA	2 cut(s)	252, 300
Tru9I	TTAA	2 cut(s)	252, 300
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	2 cut(s)	137, 243
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	1 cut(s)	438
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	139
Van91I	CCANNNNNTGG	1 cut(s)	199
XceI	RCATGY	2 cut(s)	457, 461
Zsp2I	ATGCAT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.