Rmu_ssc0000155.1_g000013

Pentatricopeptide repeat-containing protein At3g29230-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000155.1
OG0014806
Physical Location & Seq
Forward (+)
49564 .. 50355
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000155.1_g000013.1.cds

Sequence Viewer

Length: 792 bp
atggaatatcccaatctcatatattcccaactgggtgctcagttcagtaataacatcatgattcaaaatgctatgattagagggtatggtggaaatggtctctttgagcaatgcctgcacctgttcgatgaaatgcctcaaagaggactcaaaccccataacttcacttgcccgtatgtgttgagctcctgttctaaactgggttggttccgaaaaggcaaacaagtgcattgccggattgtgaaggatgggtttgagtccaatctatcagttgctaatgctattttccatttatacgttaaaatagtggatttgagtgatgcccggaaggtgtttgatgatgtgtctgtgaaaactatcgaattatggaaccgaatgatttcactttatgtgagtgcttatgatgttcagagtgcaaggaagctgtttgatgtcatgcctgaaagggacattgtttcgtggaattcgatgatcaccggctacactgcagtaagggatgcaggcaatgcgagagatttgtttgagcggatgcccgagaaggatgttgtatcatggacaataatgatcagagtgtatgccgctgcaggagaccttatgacagcgagaaagtttttcgagacaatgccttgcaagaatgtggtttcatggaactctatgatttcaagttactcccagcatggacaacttgaacaagcattggatcttctttccaaatgcaatcgggtggtgaaattgcggacaaatacacgtttgtttctgttctatcggcttgttctcagttgggtgctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

263

Amino Acids

30.33

Weight (kDa)

9.08

Isoelectric Point (pI)

28.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014806)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29410
malus_domestica MD01G1200000.v1.1 MD07G1267900.v1.1
prunus_persica Prupe.2G293600_v2.0.a1
pyrus_communis pycom01g21010 pycom07g24550
rosa_chinensis RchiOBHm_Chr1g0377181 RchiOBHm_Chr1g0377191
rosa_laevigata RLG00000026538
rosa_multiflora Rmu_ssc0000155.1_g000013 Rmu_ssc0000155.1_g000014
rosa_roxburghii Rroxscaffold_4G00281400
rosa_rugosa Rorug01G0401900
rosa_samantha Rh1AG419300 Rh1BG378400 Rh1CG392400
rosa_wichuraiana Rw1G036780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 526
AciI CCGC 3 cut(s) 526, 579, 736
AclWI GGATC 1 cut(s) 708
AcsI RAATTY 1 cut(s) 463
AfiI CCNNNNNNNGG 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 746
AgsI TTSAA 3 cut(s) 65, 663, 689
AluBI AGCT 2 cut(s) 186, 424
AluI AGCT 2 cut(s) 186, 424
Alw21I GWGCWC 2 cut(s) 40, 188
Alw26I GTCTC 3 cut(s) 104, 582, 611
AlwI GGATC 1 cut(s) 708
Ama87I CYCGRG 1 cut(s) 533
ApeKI GCWGC 1 cut(s) 581
ApoI RAATTY 1 cut(s) 463
Asp700I GAANNNNTTC 1 cut(s) 379
AsuC2I CCSGG 1 cut(s) 325
AsuHPI GGTGA 2 cut(s) 466, 739
AvaI CYCGRG 1 cut(s) 533
BanII GRGCYC 1 cut(s) 188
Bbv12I GWGCWC 2 cut(s) 40, 188
BbvI GCAGC 1 cut(s) 568
BccI CCATC 1 cut(s) 242
BclI TGATCA 2 cut(s) 471, 564
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 3 cut(s) 104, 582, 611
BfmI CTRYAG 2 cut(s) 486, 582
BisI GCNGC 2 cut(s) 579, 582
BlsI GCNGC 2 cut(s) 580, 583
Bme1390I CCNGG 1 cut(s) 325
BmeT110I CYCGRG 1 cut(s) 533
BmiI GGNNCC 2 cut(s) 209, 371
BmrFI CCNGG 1 cut(s) 325
BmrI ACTGGG 2 cut(s) 41, 209
BmsI GCATC 3 cut(s) 310, 487, 519
BmuI ACTGGG 2 cut(s) 41, 209
BpuMI CCSGG 1 cut(s) 325
BsaI GGTCTC 2 cut(s) 104, 582
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse118I RCCGGY 1 cut(s) 476
Bse1I ACTGG 2 cut(s) 36, 204
Bse3DI GCAATG 3 cut(s) 116, 229, 511
BseGI GGATG 4 cut(s) 253, 502, 534, 547
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 3 cut(s) 116, 229, 511
BseMII CTCAG 2 cut(s) 53, 790
BseNI ACTGG 2 cut(s) 36, 204
BseXI GCAGC 1 cut(s) 568
BseYI CCCAGC 1 cut(s) 672
BsgI GTGCAG 1 cut(s) 101
BsiHKAI GWGCWC 2 cut(s) 40, 188
BsiHKCI CYCGRG 1 cut(s) 533
BsiSI CCGG 3 cut(s) 235, 325, 477
BslFI GGGAC 1 cut(s) 461
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 3 cut(s) 104, 582, 611
BsmFI GGGAC 1 cut(s) 461
Bso31I GGTCTC 2 cut(s) 104, 582
BsoBI CYCGRG 1 cut(s) 533
Bsp1286I GDGCHC 2 cut(s) 40, 188
Bsp143I GATC 3 cut(s) 471, 564, 700
BspACI CCGC 3 cut(s) 526, 579, 736
BspCNI CTCAG 2 cut(s) 52, 789
BspHI TCATGA 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 209, 371
BspMAI CTGCAG 2 cut(s) 490, 586
BspPI GGATC 1 cut(s) 708
BspTNI GGTCTC 2 cut(s) 104, 582
BsrBI CCGCTC 1 cut(s) 526
BsrDI GCAATG 3 cut(s) 116, 229, 511
BsrFI RCCGGY 1 cut(s) 476
BsrI ACTGG 2 cut(s) 36, 204
BssAI RCCGGY 1 cut(s) 476
BssMI GATC 3 cut(s) 471, 564, 700
BstAPI GCANNNNNTGC 2 cut(s) 115, 506
BstC8I GCNNGC 2 cut(s) 116, 502
BstDEI CTNAG 2 cut(s) 39, 776
BstENI CCTNNNNNAGG 1 cut(s) 141
BstF5I GGATG 4 cut(s) 253, 502, 534, 547
BstKTI GATC 3 cut(s) 474, 567, 703
BstMAI GTCTC 3 cut(s) 104, 582, 611
BstMBI GATC 3 cut(s) 471, 564, 700
BstMWI GCNNNNNNNGC 2 cut(s) 115, 506
BstSCI CCNGG 1 cut(s) 323
BstSFI CTRYAG 2 cut(s) 486, 582
BstV1I GCAGC 1 cut(s) 568
BstX2I RGATCY 1 cut(s) 700
BstYI RGATCY 1 cut(s) 700
BtsCI GGATG 4 cut(s) 253, 502, 534, 547
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 1 cut(s) 483
Cac8I GCNNGC 2 cut(s) 116, 502
CciI TCATGA 1 cut(s) 57
Cfr10I RCCGGY 1 cut(s) 476
CviAII CATG 5 cut(s) 58, 436, 552, 645, 677
CviJI RGCY 4 cut(s) 186, 424, 480, 769
CviKI_1 RGCY 4 cut(s) 186, 424, 480, 769
DdeI CTNAG 2 cut(s) 39, 776
DpnI GATC 3 cut(s) 473, 566, 702
DpnII GATC 3 cut(s) 471, 564, 700
Ecl136II GAGCTC 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 188
Eco31I GGTCTC 2 cut(s) 104, 582
Eco53kI GAGCTC 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 533
EcoICRI GAGCTC 1 cut(s) 186
EcoNI CCTNNNNNAGG 1 cut(s) 141
EcoRI GAATTC 1 cut(s) 463
EcoT38I GRGCYC 1 cut(s) 188
FaeI CATG 5 cut(s) 61, 439, 555, 648, 680
FaqI GGGAC 1 cut(s) 461
FatI CATG 5 cut(s) 57, 435, 551, 644, 676
FbaI TGATCA 2 cut(s) 471, 564
Fnu4HI GCNGC 2 cut(s) 579, 582
FokI GGATG 4 cut(s) 260, 509, 541, 554
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 2 cut(s) 579, 582
GluI GCNGC 2 cut(s) 579, 582
GsaI CCCAGC 1 cut(s) 676
HapII CCGG 3 cut(s) 235, 325, 477
Hin1II CATG 5 cut(s) 61, 439, 555, 648, 680
HinfI GANTC 3 cut(s) 61, 147, 257
HpaII CCGG 3 cut(s) 235, 325, 477
HphI GGTGA 2 cut(s) 466, 739
Hpy188I TCNGA 3 cut(s) 212, 411, 569
Hpy188III TCNNGA 2 cut(s) 58, 616
HpyAV CCTTC 3 cut(s) 238, 322, 532
HpyCH4IV ACGT 2 cut(s) 297, 748
HpyCH4V TGCA 8 cut(s) 118, 229, 416, 488, 500, 584, 630, 717
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 506
HpyF3I CTNAG 2 cut(s) 39, 776
HpySE526I ACGT 2 cut(s) 297, 748
Hsp92II CATG 5 cut(s) 61, 439, 555, 648, 680
Ksp22I TGATCA 2 cut(s) 471, 564
Kzo9I GATC 3 cut(s) 471, 564, 700
LmnI GCTCC 1 cut(s) 191
Lsp1109I GCAGC 1 cut(s) 568
LweI GCATC 3 cut(s) 310, 487, 519
MaeII ACGT 2 cut(s) 297, 748
MaeIII GTNAC 1 cut(s) 665
MalI GATC 3 cut(s) 473, 566, 702
MbiI CCGCTC 1 cut(s) 526
MboI GATC 3 cut(s) 471, 564, 700
MboII GAAGA 1 cut(s) 695
MflI RGATCY 1 cut(s) 700
MhlI GDGCHC 2 cut(s) 40, 188
MluCI AATT 3 cut(s) 362, 463, 731
MlyI GAGTC 2 cut(s) 141, 266
MnlI CCTC 3 cut(s) 74, 137, 147
MroXI GAANNNNTTC 1 cut(s) 379
MseI TTAA 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 3 cut(s) 235, 325, 477
MspR9I CCNGG 1 cut(s) 325
MwoI GCNNNNNNNGC 2 cut(s) 115, 506
NciI CCSGG 1 cut(s) 325
NdeII GATC 3 cut(s) 471, 564, 700
NlaIII CATG 5 cut(s) 61, 439, 555, 648, 680
NlaIV GGNNCC 2 cut(s) 209, 371
PagI TCATGA 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 464
PdmI GAANNNNTTC 1 cut(s) 379
PfeI GAWTC 1 cut(s) 61
PkrI GCNGC 2 cut(s) 580, 583
PleI GAGTC 2 cut(s) 141, 265
PpsI GAGTC 2 cut(s) 141, 265
Psp124BI GAGCTC 1 cut(s) 188
PspFI CCCAGC 1 cut(s) 672
PspN4I GGNNCC 2 cut(s) 209, 371
PstI CTGCAG 2 cut(s) 490, 586
PsuI RGATCY 1 cut(s) 700
SacI GAGCTC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 2 cut(s) 579, 582
Sau3AI GATC 3 cut(s) 471, 564, 700
SchI GAGTC 2 cut(s) 141, 266
ScrFI CCNGG 1 cut(s) 325
SduI GDGCHC 2 cut(s) 40, 188
SetI ASST 7 cut(s) 123, 188, 300, 333, 426, 594, 751
SfaNI GCATC 3 cut(s) 310, 487, 519
SfcI CTRYAG 2 cut(s) 486, 582
Sse9I AATT 3 cut(s) 362, 463, 731
SsiI CCGC 3 cut(s) 526, 579, 736
SstI GAGCTC 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 323
TaiI ACGT 2 cut(s) 300, 751
TaqI TCGA 4 cut(s) 126, 360, 467, 615
TasI AATT 3 cut(s) 362, 463, 731
TauI GCSGC 1 cut(s) 581
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 1 cut(s) 490
TseI GCWGC 1 cut(s) 581
TspDTI ATGAA 2 cut(s) 144, 633
TspRI CASTG 1 cut(s) 490
XagI CCTNNNNNAGG 1 cut(s) 141
XapI RAATTY 1 cut(s) 463
XmnI GAANNNNTTC 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.