Rmu_ssc0000155.1_g000014

Pentatricopeptide repeat domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000155.1
OG0014806
Physical Location & Seq
Forward (+)
50492 .. 51194
703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000155.1_g000014.1.cds

Sequence Viewer

Length: 627 bp
atgggaaagagggatgtattttgttggaatgttatgattagatctgtagctatccacggaagaacagaagacgccatcaagatgtactcattgatgcaaaaaaaagggttgaagccgaatgacttcaccttcactgctgctctattcgcttgtagccatggaggcttagtaaaggaagaagacgccatcaagatgtactcattgatgcaaaaaaaagggttgaagccgaatgacttcatcttcactgctgctctattcgcttgtagccatggaggcttagtaaaggaaggtgaaagaatcttccattccatggagagggattttggggttgagccaaaactccagcattatggctgcataattgacctactgagccgaaacggtcagttggaggaagcagtacgtctatttaaggcaatgccgtataagcctgacatagcaatatggggagctttgcttggcggttgcagagatataagtcaccttaaattggcagaggaagtgatagagaaagctacagagttggaagcaaatgaatcaggagtttatgtgctcttggctaacatgcatgcctcagtagggcaatggccggaggctcaaagtgcaagagaaatgatggaagaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

208

Amino Acids

23.33

Weight (kDa)

6.18

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014806)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29410
malus_domestica MD01G1200000.v1.1 MD07G1267900.v1.1
prunus_persica Prupe.2G293600_v2.0.a1
pyrus_communis pycom01g21010 pycom07g24550
rosa_chinensis RchiOBHm_Chr1g0377181 RchiOBHm_Chr1g0377191
rosa_laevigata RLG00000026538
rosa_multiflora Rmu_ssc0000155.1_g000013 Rmu_ssc0000155.1_g000014
rosa_roxburghii Rroxscaffold_4G00281400
rosa_rugosa Rorug01G0401900
rosa_samantha Rh1AG419300 Rh1BG378400 Rh1CG392400
rosa_wichuraiana Rw1G036780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 310
AciI CCGC 1 cut(s) 462
AcoI YGGCCR 1 cut(s) 587
AcyI GRCGYC 2 cut(s) 72, 183
AfaI GTAC 3 cut(s) 86, 197, 402
AfiI CCNNNNNNNGG 4 cut(s) 310, 315, 490, 579
AgsI TTSAA 2 cut(s) 112, 223
AluBI AGCT 3 cut(s) 50, 452, 515
AluI AGCT 3 cut(s) 50, 452, 515
Alw21I GWGCWC 1 cut(s) 555
AoxI GGCC 1 cut(s) 587
ApeKI GCWGC 3 cut(s) 137, 248, 354
Asp700I GAANNNNTTC 2 cut(s) 122, 233
AsuHPI GGTGA 3 cut(s) 118, 302, 473
BbsI GAAGAC 2 cut(s) 75, 186
Bbv12I GWGCWC 1 cut(s) 555
BbvI GCAGC 3 cut(s) 124, 235, 341
BccI CCATC 3 cut(s) 83, 194, 610
BceAI ACGGC 1 cut(s) 406
BfmI CTRYAG 2 cut(s) 45, 516
BglI GCCNNNNNGGC 2 cut(s) 162, 273
BglII AGATCT 1 cut(s) 41
BisI GCNGC 3 cut(s) 138, 249, 355
BlsI GCNGC 3 cut(s) 139, 250, 356
BmsI GCATC 2 cut(s) 84, 195
BpiI GAAGAC 2 cut(s) 75, 186
BpmI CTGGAG 1 cut(s) 326
BsaHI GRCGYC 2 cut(s) 72, 183
BsaJI CCNNGG 4 cut(s) 55, 157, 268, 309
BsaXI ACNNNNNCTCC 6 cut(s) 153, 183, 264, 294, 534, 564
Bsc4I CCNNNNNNNGG 4 cut(s) 310, 315, 490, 579
Bse3DI GCAATG 2 cut(s) 423, 590
BseDI CCNNGG 4 cut(s) 55, 157, 268, 309
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 4 cut(s) 310, 315, 490, 579
BseMI GCAATG 2 cut(s) 423, 590
BseMII CTCAG 2 cut(s) 362, 588
BseXI GCAGC 3 cut(s) 124, 235, 341
BshFI GGCC 1 cut(s) 589
BsiHKAI GWGCWC 1 cut(s) 555
BsiSI CCGG 1 cut(s) 590
BslI CCNNNNNNNGG 4 cut(s) 310, 315, 490, 579
BsnI GGCC 1 cut(s) 589
Bsp1286I GDGCHC 1 cut(s) 555
Bsp143I GATC 1 cut(s) 41
Bsp19I CCATGG 3 cut(s) 157, 268, 309
BspACI CCGC 1 cut(s) 462
BspANI GGCC 1 cut(s) 589
BspCNI CTCAG 2 cut(s) 363, 587
BsrDI GCAATG 2 cut(s) 423, 590
BssECI CCNNGG 4 cut(s) 55, 157, 268, 309
BssMI GATC 1 cut(s) 41
BssNI GRCGYC 2 cut(s) 72, 183
BssT1I CCWWGG 3 cut(s) 157, 268, 309
Bst4CI ACNGT 1 cut(s) 383
BstACI GRCGYC 2 cut(s) 72, 183
BstC8I GCNNGC 1 cut(s) 570
BstDEI CTNAG 4 cut(s) 166, 277, 371, 574
BstDSI CCRYGG 4 cut(s) 55, 157, 268, 309
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 1 cut(s) 44
BstMBI GATC 1 cut(s) 41
BstMWI GCNNNNNNNGC 6 cut(s) 146, 162, 257, 273, 427, 602
BstNSI RCATGY 2 cut(s) 568, 572
BstSFI CTRYAG 2 cut(s) 45, 516
BstV1I GCAGC 3 cut(s) 124, 235, 341
BstV2I GAAGAC 2 cut(s) 75, 186
BstX2I RGATCY 1 cut(s) 41
BstXI CCANNNNNNTGG 1 cut(s) 350
BstYI RGATCY 1 cut(s) 41
BsuRI GGCC 1 cut(s) 589
BtgI CCRYGG 4 cut(s) 55, 157, 268, 309
BtsCI GGATG 1 cut(s) 19
BtsI GCAGTG 2 cut(s) 132, 243
BtsIMutI CAGTG 2 cut(s) 132, 243
Cac8I GCNNGC 1 cut(s) 570
CseI GACGC 2 cut(s) 80, 191
Csp6I GTAC 3 cut(s) 85, 196, 401
CviAII CATG 5 cut(s) 158, 269, 310, 565, 569
CviQI GTAC 3 cut(s) 85, 196, 401
DdeI CTNAG 4 cut(s) 166, 277, 371, 574
DpnI GATC 1 cut(s) 43
DpnII GATC 1 cut(s) 41
EaeI YGGCCR 1 cut(s) 587
Eco130I CCWWGG 3 cut(s) 157, 268, 309
EcoT14I CCWWGG 3 cut(s) 157, 268, 309
EcoT22I ATGCAT 1 cut(s) 570
ErhI CCWWGG 3 cut(s) 157, 268, 309
FaeI CATG 5 cut(s) 161, 272, 313, 568, 572
FatI CATG 5 cut(s) 157, 268, 309, 564, 568
Fnu4HI GCNGC 3 cut(s) 138, 249, 355
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 3 cut(s) 138, 249, 355
GluI GCNGC 3 cut(s) 138, 249, 355
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 1 cut(s) 589
HapII CCGG 1 cut(s) 590
HgaI GACGC 2 cut(s) 80, 191
Hin1I GRCGYC 2 cut(s) 72, 183
Hin1II CATG 5 cut(s) 161, 272, 313, 568, 572
HinfI GANTC 2 cut(s) 297, 536
HpaII CCGG 1 cut(s) 590
HphI GGTGA 3 cut(s) 118, 302, 473
Hpy188III TCNNGA 3 cut(s) 79, 190, 540
HpyAV CCTTC 2 cut(s) 139, 281
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4IV ACGT 1 cut(s) 403
HpyCH4V TGCA 6 cut(s) 97, 208, 357, 468, 568, 605
HpyF10VI GCNNNNNNNGC 6 cut(s) 146, 162, 257, 273, 427, 602
HpyF3I CTNAG 4 cut(s) 166, 277, 371, 574
HpySE526I ACGT 1 cut(s) 403
Hsp92I GRCGYC 2 cut(s) 72, 183
Hsp92II CATG 5 cut(s) 161, 272, 313, 568, 572
Kzo9I GATC 1 cut(s) 41
LmnI GCTCC 1 cut(s) 449
LpnPI CCDG 4 cut(s) 356, 444, 525, 603
Lsp1109I GCAGC 3 cut(s) 124, 235, 341
LweI GCATC 2 cut(s) 84, 195
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 1 cut(s) 479
MalI GATC 1 cut(s) 43
MboI GATC 1 cut(s) 41
MboII GAAGA 6 cut(s) 72, 80, 188, 191, 232, 292
MflI RGATCY 1 cut(s) 41
MhlI GDGCHC 1 cut(s) 555
MluCI AATT 2 cut(s) 360, 488
MmeI TCCRAC 3 cut(s) 5, 369, 504
MnlI CCTC 8 cut(s) 3, 155, 266, 309, 385, 490, 583, 586
Mph1103I ATGCAT 1 cut(s) 570
MroXI GAANNNNTTC 2 cut(s) 122, 233
MseI TTAA 2 cut(s) 411, 486
MslI CAYNNNNRTG 2 cut(s) 80, 191
MspI CCGG 1 cut(s) 590
MwoI GCNNNNNNNGC 6 cut(s) 146, 162, 257, 273, 427, 602
NcoI CCATGG 3 cut(s) 157, 268, 309
NdeII GATC 1 cut(s) 41
NlaIII CATG 5 cut(s) 161, 272, 313, 568, 572
NmuCI GTSAC 1 cut(s) 479
NsiI ATGCAT 1 cut(s) 570
NspI RCATGY 2 cut(s) 568, 572
PaeI GCATGC 1 cut(s) 572
PdmI GAANNNNTTC 2 cut(s) 122, 233
PfeI GAWTC 2 cut(s) 297, 536
PflMI CCANNNNNTGG 1 cut(s) 310
PkrI GCNGC 3 cut(s) 139, 250, 356
PsuI RGATCY 1 cut(s) 41
RsaI GTAC 3 cut(s) 86, 197, 402
RsaNI GTAC 3 cut(s) 85, 196, 401
RseI CAYNNNNRTG 2 cut(s) 80, 191
SaqAI TTAA 2 cut(s) 411, 486
SatI GCNGC 3 cut(s) 138, 249, 355
Sau3AI GATC 1 cut(s) 41
SduI GDGCHC 1 cut(s) 555
SetI ASST 8 cut(s) 52, 131, 292, 369, 406, 454, 486, 517
SfaNI GCATC 2 cut(s) 84, 195
SfcI CTRYAG 2 cut(s) 45, 516
SmiMI CAYNNNNRTG 2 cut(s) 80, 191
SphI GCATGC 1 cut(s) 572
Sse9I AATT 2 cut(s) 360, 488
SsiI CCGC 1 cut(s) 462
StyI CCWWGG 3 cut(s) 157, 268, 309
TaaI ACNGT 1 cut(s) 383
TaiI ACGT 1 cut(s) 406
TasI AATT 2 cut(s) 360, 488
TatI WGTACW 2 cut(s) 84, 195
TfiI GAWTC 2 cut(s) 297, 536
Tru1I TTAA 2 cut(s) 411, 486
Tru9I TTAA 2 cut(s) 411, 486
TscAI CASTG 2 cut(s) 139, 250
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 3 cut(s) 137, 248, 354
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 2 cut(s) 226, 549
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 2 cut(s) 139, 250
Van91I CCANNNNNTGG 1 cut(s) 310
XceI RCATGY 2 cut(s) 568, 572
XmnI GAANNNNTTC 2 cut(s) 122, 233
Zsp2I ATGCAT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.