Rorug01G0401900

Pentatricopeptide repeat-containing protein At3g29230-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014806
Physical Location & Seq
Reverse (-)
50973617 .. 50974609
993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0401900.1

Sequence Viewer

Length: 342 bp
ATGCGCCTGCTGACCGGCTGCGACAACAAAAACGACGCGTCGTTTCTGTTCAATCCTCAGTCTATTTGCTCCGTCGGCCCCGTCGTCCTAGTGGAGGGCTGTGACCCAGAGCAGGAGATCTCCTGGGTACACGCCTGGACTGTCACGGATGGGATAATCACCCAGGTCAGGGAGTACTTCAACACTTCCCTCACCGTCACCCGCCTCGGCAACTCCGGCAAATCCACACCGTCCAAGTTCTCCAAATCGACGTCCGAGATTACATCGTACCGCTGCCCCTCCGTCTGGGAGAGCTCCAACCGGGTCGGGAAGTCGGTTCCGGGTCTGGTCCTCGCAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

113

Amino Acids

12.33

Weight (kDa)

6.54

Isoelectric Point (pI)

29.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WI12 PF07107 1 - 113 2.6e-41 Wound-induced protein WI12
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014806)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29410
malus_domestica MD01G1200000.v1.1 MD07G1267900.v1.1
prunus_persica Prupe.2G293600_v2.0.a1
pyrus_communis pycom01g21010 pycom07g24550
rosa_chinensis RchiOBHm_Chr1g0377181 RchiOBHm_Chr1g0377191
rosa_laevigata RLG00000026538
rosa_multiflora Rmu_ssc0000155.1_g000013 Rmu_ssc0000155.1_g000014
rosa_roxburghii Rroxscaffold_4G00281400
rosa_rugosa Rorug01G0401900
rosa_samantha Rh1AG419300 Rh1BG378400 Rh1CG392400
rosa_wichuraiana Rw1G036780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 254
AccII CGCG 1 cut(s) 38
AciI CCGC 2 cut(s) 202, 271
AcyI GRCGYC 1 cut(s) 251
AfaI GTAC 3 cut(s) 129, 176, 269
AfiI CCNNNNNNNGG 5 cut(s) 94, 112, 168, 169, 285
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 2 cut(s) 52, 181
AjnI CCWGG 3 cut(s) 122, 134, 162
AluBI AGCT 1 cut(s) 294
AluI AGCT 1 cut(s) 294
Alw21I GWGCWC 1 cut(s) 296
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 2 cut(s) 18, 273
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 77, 328
AsuC2I CCSGG 2 cut(s) 302, 321
AsuHPI GGTGA 3 cut(s) 151, 184, 190
AvaII GGWCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 5, 260
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 3 cut(s) 124, 136, 164
BcnI CCSGG 2 cut(s) 302, 321
BfaI CTAG 1 cut(s) 89
BglII AGATCT 1 cut(s) 117
BisI GCNGC 2 cut(s) 19, 274
BlsI GCNGC 2 cut(s) 20, 275
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 5 cut(s) 124, 136, 164, 302, 321
Bme18I GGWCC 1 cut(s) 328
BmgT120I GGNCC 2 cut(s) 77, 328
BmiI GGNNCC 2 cut(s) 79, 318
BmrFI CCNGG 5 cut(s) 124, 136, 164, 302, 321
BpuMI CCSGG 2 cut(s) 302, 321
BsaHI GRCGYC 1 cut(s) 251
BsaJI CCNNGG 3 cut(s) 123, 162, 205
Bsc4I CCNNNNNNNGG 5 cut(s) 94, 112, 168, 169, 285
Bse118I RCCGGY 1 cut(s) 14
BseBI CCWGG 3 cut(s) 124, 136, 164
BseDI CCNNGG 3 cut(s) 123, 162, 205
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 5 cut(s) 94, 112, 168, 169, 285
BseMII CTCAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 5, 260
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 296
BsiSI CCGG 4 cut(s) 15, 216, 301, 320
BslI CCNNNNNNNGG 5 cut(s) 94, 112, 168, 169, 285
BsnI GGCC 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 1 cut(s) 117
BspACI CCGC 2 cut(s) 202, 271
BspANI GGCC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 70
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 2 cut(s) 79, 318
BsrFI RCCGGY 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 3 cut(s) 123, 162, 205
BssMI GATC 1 cut(s) 117
BssNI GRCGYC 1 cut(s) 251
Bst2UI CCWGG 3 cut(s) 124, 136, 164
Bst4CI ACNGT 3 cut(s) 142, 196, 231
BstACI GRCGYC 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 1 cut(s) 57
BstENI CCTNNNNNAGG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 154
BstFNI CGCG 1 cut(s) 38
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 120
BstMBI GATC 1 cut(s) 117
BstMWI GCNNNNNNNGC 2 cut(s) 75, 216
BstNI CCWGG 3 cut(s) 124, 136, 164
BstSCI CCNGG 5 cut(s) 122, 134, 162, 300, 319
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 5, 260
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
BsuRI GGCC 1 cut(s) 78
BtsCI GGATG 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 8
CfoI GCGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 77, 328
CseI GACGC 2 cut(s) 27, 44
Csp6I GTAC 3 cut(s) 128, 175, 268
CviJI RGCY 4 cut(s) 18, 78, 99, 294
CviKI_1 RGCY 4 cut(s) 18, 78, 99, 294
CviQI GTAC 3 cut(s) 128, 175, 268
DdeI CTNAG 1 cut(s) 57
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 328
Eco53kI GAGCTC 1 cut(s) 294
EcoICRI GAGCTC 1 cut(s) 294
EcoNI CCTNNNNNAGG 1 cut(s) 92
EcoRII CCWGG 3 cut(s) 122, 134, 162
EcoT38I GRGCYC 1 cut(s) 296
FauI CCCGC 1 cut(s) 209
Fnu4HI GCNGC 2 cut(s) 19, 274
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 296
Fsp4HI GCNGC 2 cut(s) 19, 274
FspBI CTAG 1 cut(s) 89
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 19, 274
HaeIII GGCC 1 cut(s) 78
HapII CCGG 4 cut(s) 15, 216, 301, 320
HgaI GACGC 2 cut(s) 27, 44
HhaI GCGC 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 251
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HpaII CCGG 4 cut(s) 15, 216, 301, 320
HphI GGTGA 3 cut(s) 151, 184, 190
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 1 cut(s) 307
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 5 cut(s) 38, 43, 77, 86, 253
HpyCH4III ACNGT 3 cut(s) 142, 196, 231
HpyCH4IV ACGT 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 216
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 1 cut(s) 251
Hsp92I GRCGYC 1 cut(s) 251
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 1 cut(s) 117
LmnI GCTCC 2 cut(s) 74, 299
Lsp1109I GCAGC 2 cut(s) 5, 260
MaeI CTAG 1 cut(s) 89
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 3 cut(s) 101, 142, 196
MalI GATC 1 cut(s) 119
MboI GATC 1 cut(s) 117
MflI RGATCY 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 296
MluI ACGCGT 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 6 cut(s) 66, 88, 200, 215, 289, 341
MspA1I CMGCKG 1 cut(s) 273
MspI CCGG 4 cut(s) 15, 216, 301, 320
MspR9I CCNGG 5 cut(s) 124, 136, 164, 302, 321
MvaI CCWGG 3 cut(s) 124, 136, 164
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 75, 216
NciI CCSGG 2 cut(s) 302, 321
NdeII GATC 1 cut(s) 117
NlaIV GGNNCC 2 cut(s) 79, 318
NmeAIII GCCGAG 1 cut(s) 186
NmuCI GTSAC 3 cut(s) 101, 142, 196
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PkrI GCNGC 2 cut(s) 20, 275
Psp124BI GAGCTC 1 cut(s) 296
Psp6I CCWGG 3 cut(s) 122, 134, 162
PspGI CCWGG 3 cut(s) 122, 134, 162
PspN4I GGNNCC 2 cut(s) 79, 318
PspPI GGNCC 2 cut(s) 77, 328
PsuI RGATCY 1 cut(s) 117
RsaI GTAC 3 cut(s) 129, 176, 269
RsaNI GTAC 3 cut(s) 128, 175, 268
SacI GAGCTC 1 cut(s) 296
SatI GCNGC 2 cut(s) 19, 274
Sau3AI GATC 1 cut(s) 117
Sau96I GGNCC 2 cut(s) 77, 328
ScaI AGTACT 1 cut(s) 176
ScrFI CCNGG 5 cut(s) 124, 136, 164, 302, 321
SduI GDGCHC 1 cut(s) 296
SetI ASST 3 cut(s) 168, 254, 296
SinI GGWCC 1 cut(s) 328
SsiI CCGC 2 cut(s) 202, 271
SspMI CTAG 1 cut(s) 89
SstI GAGCTC 1 cut(s) 296
StyD4I CCNGG 5 cut(s) 122, 134, 162, 300, 319
TaaI ACNGT 3 cut(s) 142, 196, 231
TaiI ACGT 1 cut(s) 254
TaqI TCGA 1 cut(s) 248
TatI WGTACW 1 cut(s) 174
TseFI GTSAC 3 cut(s) 101, 142, 196
TseI GCWGC 2 cut(s) 18, 273
Tsp45I GTSAC 3 cut(s) 101, 142, 196
TspGWI ACGGA 3 cut(s) 61, 161, 271
VpaK11BI GGWCC 1 cut(s) 328
XagI CCTNNNNNAGG 1 cut(s) 92
XspI CTAG 1 cut(s) 89
ZraI GACGTC 1 cut(s) 252
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.