Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014806

Physical Location & Seq

Genomic Coordinates Reverse (-)

64205336 .. 64206521

Gene Structure 1186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60077

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCTTATTTCTTAGAGCTCAAACTCTCAGAATTACTGCCGCAATGCACATTCAGACAGTTGAAGCAAATACATGCCCTCATTCTCACTACCTCACTCAACCAAGACATCCAAACTTTCTCCAAATTTCTCTGGCGGAGCACGGAGTTTGGAACCATGGAATATCCCAATCTCATATATTCCCAACTGGGTGCTCAGTTCAGTAATAACATCATGATTCAAAATGCTATGATTAGAGGGTATGGTGGAAATGGTCTCTTTGAGCAATGCCTGCACCTGTTCGATGAAATGCCTCAAAGAGGACTCAAACCCCATAACTTCACTTGCCCGTATGTGTTGAGCTCCTGTTCTAAACTGGGTTGGTTCCGAAAAGGCAAACAAGTGCATTGCCGGATTGTGAAGGGTGGGTTTGAGTCCAATCTATCAGTTGCTAATGCTATTTTCCATTTATACGTTAAAATAGTGGATTTGAGTGATGCCCGGAAGGTGTTTGATGATGTGTCTGTGAAAACTATCGAATTATGGAACCGAATGATTTCACTTTATGTGAGTGCTTGTGATGTTCAGAGTGCAAGGAAGCTGTTTGATGTCATGCCTGAAAGGGACATTGTTTCGTGGAATTCGATGATCACCGGCTACACTGCAGTAAGGGATGCAGGCAATGCGAGAGATTTGTTTGAGCGGATGCCCGAGAAGGATGTTGTATCATGGACAATAATGATCAGAGTGTATGCCGCTGCAGGAGACCTTATGACAGCGAGAAAGTTTTTCGAGACAATGCCTTGCAAGAATGTGGTTTCATGGAACTCTATGATTTCAAGTTACTCCCAGCATCGACAACTTGAACAAGCATTGGATCTCTTTTCCAAATGCAATCGGTTGGGTGCTTTAGAATTTGGAAAGTGGGTACACTACTTGATAGAAGACTGGTCTCAGTTTGGAGCCATTTTGGGGACTGCCCTTATCGATATGTATGCAAAGTGCGGCGATATAAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

333

Amino Acids

38.23

Weight (kDa)

8.49

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	70 - 117	6e-08	PPR repeat family
PPR	PF01535	75 - 102	5.5e-06	PPR repeat
PPR_2	PF13041	263 - 290	4.4e-06	PPR repeat family
PPR	PF01535	266 - 293	1.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014806)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g29410
malus_domestica	MD01G1200000.v1.1 MD07G1267900.v1.1
prunus_persica	Prupe.2G293600_v2.0.a1
pyrus_communis	pycom01g21010 pycom07g24550
rosa_chinensis	RchiOBHm_Chr1g0377181 RchiOBHm_Chr1g0377191
rosa_laevigata	RLG00000026538
rosa_multiflora	Rmu_ssc0000155.1_g000013 Rmu_ssc0000155.1_g000014
rosa_roxburghii	Rroxscaffold_4G00281400
rosa_rugosa	Rorug01G0401900
rosa_samantha	Rh1AG419300 Rh1BG378400 Rh1CG392400
rosa_wichuraiana	Rw1G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1000
AccBSI	CCGCTC	1 cut(s)	682
AciI	CCGC	5 cut(s)	41, 136, 682, 735, 984
AclWI	GGATC	1 cut(s)	864
AcsI	RAATTY	3 cut(s)	125, 619, 893
AfaI	GTAC	1 cut(s)	909
AfiI	CCNNNNNNNGG	2 cut(s)	299, 951
AgsI	TTSAA	4 cut(s)	64, 221, 819, 845
AluBI	AGCT	3 cut(s)	19, 342, 580
AluI	AGCT	3 cut(s)	19, 342, 580
Alw21I	GWGCWC	4 cut(s)	21, 143, 196, 344
Alw26I	GTCTC	4 cut(s)	260, 738, 767, 936
AlwI	GGATC	1 cut(s)	864
Ama87I	CYCGRG	1 cut(s)	689
ApeKI	GCWGC	1 cut(s)	737
ApoI	RAATTY	3 cut(s)	125, 619, 893
Asp700I	GAANNNNTTC	1 cut(s)	535
AsuC2I	CCSGG	1 cut(s)	481
AsuHPI	GGTGA	1 cut(s)	622
AvaI	CYCGRG	1 cut(s)	689
BanII	GRGCYC	2 cut(s)	21, 344
BbsI	GAAGAC	1 cut(s)	930
Bbv12I	GWGCWC	4 cut(s)	21, 143, 196, 344
BbvI	GCAGC	1 cut(s)	724
BcgI	CGANNNNNNTGC	2 cut(s)	956, 990
BclI	TGATCA	2 cut(s)	627, 720
BcnI	CCSGG	1 cut(s)	481
BcoDI	GTCTC	4 cut(s)	260, 738, 767, 936
BfmI	CTRYAG	2 cut(s)	642, 738
BisI	GCNGC	4 cut(s)	41, 735, 738, 985
BlsI	GCNGC	4 cut(s)	42, 736, 739, 986
Bme1390I	CCNGG	1 cut(s)	481
BmeT110I	CYCGRG	1 cut(s)	689
BmiI	GGNNCC	4 cut(s)	154, 365, 527, 943
BmrFI	CCNGG	1 cut(s)	481
BmrI	ACTGGG	2 cut(s)	197, 365
BmsI	GCATC	4 cut(s)	466, 643, 675, 841
BmuI	ACTGGG	2 cut(s)	197, 365
BpiI	GAAGAC	1 cut(s)	930
BpuMI	CCSGG	1 cut(s)	481
Bsa29I	ATCGAT	1 cut(s)	966
BsaI	GGTCTC	3 cut(s)	260, 738, 936
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 951
Bse118I	RCCGGY	1 cut(s)	632
Bse1I	ACTGG	3 cut(s)	192, 360, 932
Bse3DI	GCAATG	4 cut(s)	50, 272, 385, 667
BseCI	ATCGAT	1 cut(s)	966
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	4 cut(s)	108, 658, 690, 703
BseLI	CCNNNNNNNGG	2 cut(s)	299, 951
BseMI	GCAATG	4 cut(s)	50, 272, 385, 667
BseMII	CTCAG	3 cut(s)	42, 209, 947
BseNI	ACTGG	3 cut(s)	192, 360, 932
BseXI	GCAGC	1 cut(s)	724
BseYI	CCCAGC	1 cut(s)	828
BsgI	GTGCAG	1 cut(s)	257
BshVI	ATCGAT	1 cut(s)	966
BsiHKAI	GWGCWC	4 cut(s)	21, 143, 196, 344
BsiHKCI	CYCGRG	1 cut(s)	689
BsiSI	CCGG	3 cut(s)	391, 481, 633
BslFI	GGGAC	2 cut(s)	617, 967
BslI	CCNNNNNNNGG	2 cut(s)	299, 951
BsmAI	GTCTC	4 cut(s)	260, 738, 767, 936
BsmFI	GGGAC	2 cut(s)	617, 967
Bso31I	GGTCTC	3 cut(s)	260, 738, 936
BsoBI	CYCGRG	1 cut(s)	689
Bsp1286I	GDGCHC	4 cut(s)	21, 143, 196, 344
Bsp143I	GATC	3 cut(s)	627, 720, 856
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	5 cut(s)	41, 136, 682, 735, 984
BspCNI	CTCAG	3 cut(s)	41, 208, 946
BspDI	ATCGAT	1 cut(s)	966
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	4 cut(s)	154, 365, 527, 943
BspMAI	CTGCAG	2 cut(s)	646, 742
BspPI	GGATC	1 cut(s)	864
BspTNI	GGTCTC	3 cut(s)	260, 738, 936
BsrBI	CCGCTC	1 cut(s)	682
BsrDI	GCAATG	4 cut(s)	50, 272, 385, 667
BsrFI	RCCGGY	1 cut(s)	632
BsrI	ACTGG	3 cut(s)	192, 360, 932
BssAI	RCCGGY	1 cut(s)	632
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	3 cut(s)	627, 720, 856
BssT1I	CCWWGG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	60
BstAPI	GCANNNNNTGC	2 cut(s)	271, 662
BstC8I	GCNNGC	2 cut(s)	272, 658
BstDEI	CTNAG	4 cut(s)	13, 28, 195, 933
BstDSI	CCRYGG	1 cut(s)	156
BstENI	CCTNNNNNAGG	1 cut(s)	297
BstF5I	GGATG	4 cut(s)	108, 658, 690, 703
BstKTI	GATC	3 cut(s)	630, 723, 859
BstMAI	GTCTC	4 cut(s)	260, 738, 767, 936
BstMBI	GATC	3 cut(s)	627, 720, 856
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 662
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	479
BstSFI	CTRYAG	2 cut(s)	642, 738
BstV1I	GCAGC	1 cut(s)	724
BstV2I	GAAGAC	1 cut(s)	930
BstX2I	RGATCY	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	856
Bsu15I	ATCGAT	1 cut(s)	966
BsuTUI	ATCGAT	1 cut(s)	966
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	4 cut(s)	108, 658, 690, 703
BtsI	GCAGTG	1 cut(s)	639
BtsIMutI	CAGTG	1 cut(s)	639
Cac8I	GCNNGC	2 cut(s)	272, 658
CciI	TCATGA	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	632
ClaI	ATCGAT	1 cut(s)	966
Csp6I	GTAC	1 cut(s)	908
CviAII	CATG	6 cut(s)	74, 157, 214, 592, 708, 801
CviJI	RGCY	6 cut(s)	5, 19, 342, 580, 636, 944
CviKI_1	RGCY	6 cut(s)	5, 19, 342, 580, 636, 944
CviQI	GTAC	1 cut(s)	908
DdeI	CTNAG	4 cut(s)	13, 28, 195, 933
DpnI	GATC	3 cut(s)	629, 722, 858
DpnII	GATC	3 cut(s)	627, 720, 856
EciI	GGCGGA	1 cut(s)	151
Ecl136II	GAGCTC	2 cut(s)	19, 342
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	2 cut(s)	21, 344
Eco31I	GGTCTC	3 cut(s)	260, 738, 936
Eco53kI	GAGCTC	2 cut(s)	19, 342
Eco88I	CYCGRG	1 cut(s)	689
EcoICRI	GAGCTC	2 cut(s)	19, 342
EcoNI	CCTNNNNNAGG	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	2 cut(s)	21, 344
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	6 cut(s)	77, 160, 217, 595, 711, 804
FaqI	GGGAC	2 cut(s)	617, 967
FatI	CATG	6 cut(s)	73, 156, 213, 591, 707, 800
FbaI	TGATCA	2 cut(s)	627, 720
Fnu4HI	GCNGC	4 cut(s)	41, 735, 738, 985
FokI	GGATG	4 cut(s)	95, 665, 697, 710
FriOI	GRGCYC	2 cut(s)	21, 344
Fsp4HI	GCNGC	4 cut(s)	41, 735, 738, 985
GluI	GCNGC	4 cut(s)	41, 735, 738, 985
GsaI	CCCAGC	1 cut(s)	832
HapII	CCGG	3 cut(s)	391, 481, 633
Hin1II	CATG	6 cut(s)	77, 160, 217, 595, 711, 804
HinfI	GANTC	3 cut(s)	217, 303, 413
HpaII	CCGG	3 cut(s)	391, 481, 633
HphI	GGTGA	1 cut(s)	622
Hpy166II	GTNNAC	1 cut(s)	910
Hpy188I	TCNGA	5 cut(s)	31, 56, 368, 567, 725
Hpy188III	TCNNGA	2 cut(s)	214, 772
Hpy8I	GTNNAC	1 cut(s)	910
HpyAV	CCTTC	3 cut(s)	394, 478, 688
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	453
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 662
HpyF3I	CTNAG	4 cut(s)	13, 28, 195, 933
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	6 cut(s)	77, 160, 217, 595, 711, 804
Ksp22I	TGATCA	2 cut(s)	627, 720
Kzo9I	GATC	3 cut(s)	627, 720, 856
LmnI	GCTCC	3 cut(s)	138, 347, 941
Lsp1109I	GCAGC	1 cut(s)	724
LweI	GCATC	4 cut(s)	466, 643, 675, 841
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	821
MalI	GATC	3 cut(s)	629, 722, 858
MbiI	CCGCTC	1 cut(s)	682
MboI	GATC	3 cut(s)	627, 720, 856
MboII	GAAGA	1 cut(s)	935
MflI	RGATCY	1 cut(s)	856
MhlI	GDGCHC	4 cut(s)	21, 143, 196, 344
MluCI	AATT	6 cut(s)	32, 125, 518, 619, 893, 995
MlyI	GAGTC	2 cut(s)	297, 422
MnlI	CCTC	5 cut(s)	89, 103, 230, 293, 303
MroXI	GAANNNNTTC	1 cut(s)	535
MseI	TTAA	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	737
MspI	CCGG	3 cut(s)	391, 481, 633
MspR9I	CCNGG	1 cut(s)	481
MwoI	GCNNNNNNNGC	2 cut(s)	271, 662
NciI	CCSGG	1 cut(s)	481
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	3 cut(s)	627, 720, 856
NlaIII	CATG	6 cut(s)	77, 160, 217, 595, 711, 804
NlaIV	GGNNCC	4 cut(s)	154, 365, 527, 943
NspI	RCATGY	1 cut(s)	77
PagI	TCATGA	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	620
PdmI	GAANNNNTTC	1 cut(s)	535
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	4 cut(s)	42, 736, 739, 986
PleI	GAGTC	2 cut(s)	297, 421
PpsI	GAGTC	2 cut(s)	297, 421
PsiI	TTATAA	1 cut(s)	1000
Psp124BI	GAGCTC	2 cut(s)	21, 344
PspFI	CCCAGC	1 cut(s)	828
PspN4I	GGNNCC	4 cut(s)	154, 365, 527, 943
PstI	CTGCAG	2 cut(s)	646, 742
PsuI	RGATCY	1 cut(s)	856
RsaI	GTAC	1 cut(s)	909
RsaNI	GTAC	1 cut(s)	908
SacI	GAGCTC	2 cut(s)	21, 344
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	4 cut(s)	41, 735, 738, 985
Sau3AI	GATC	3 cut(s)	627, 720, 856
SchI	GAGTC	2 cut(s)	297, 422
ScrFI	CCNGG	1 cut(s)	481
SduI	GDGCHC	4 cut(s)	21, 143, 196, 344
SetI	ASST	8 cut(s)	21, 95, 279, 344, 456, 489, 582, 750
SfaNI	GCATC	4 cut(s)	466, 643, 675, 841
SfcI	CTRYAG	2 cut(s)	642, 738
Sse9I	AATT	6 cut(s)	32, 125, 518, 619, 893, 995
SsiI	CCGC	5 cut(s)	41, 136, 682, 735, 984
SstI	GAGCTC	2 cut(s)	21, 344
StyD4I	CCNGG	1 cut(s)	479
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	6 cut(s)	282, 516, 623, 771, 835, 966
TasI	AATT	6 cut(s)	32, 125, 518, 619, 893, 995
TauI	GCSGC	3 cut(s)	43, 737, 987
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	1 cut(s)	646
TseI	GCWGC	1 cut(s)	737
TspDTI	ATGAA	2 cut(s)	300, 789
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	1 cut(s)	646
XagI	CCTNNNNNAGG	1 cut(s)	297
XapI	RAATTY	3 cut(s)	125, 619, 893
XceI	RCATGY	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.