Rw1G036780

Pentatricopeptide repeat-containing protein At3g29230-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0014806
Physical Location & Seq
Reverse (-)
64593545 .. 64595164
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G036780.1

Sequence Viewer

Length: 1452 bp
ATGGCTTATTTCTTAGAGCTCAAACTCTCAGAATTACTGCCGCAATGCTCATTCAGACAGTTGAAGCAAATACATGCCCTCATTCTCACTATCCAAACTTTCTCCAAATTTCTCTGGCGGAGCACGGTGTTTGGAACCATGGAATATCCCAATCTCATATATTCCCAACTTGGTGCTCAGTTCAGTAATAACATCATGATTCAAAATGCTATGATTAGAGGGTATGGTGGAAATGGTCTCTTTGAGCAATGCCTGCACCTGTTCGATGAAATGCCTCAAAGAGGACTCAAACCCCATAACTTCACTTACCCATATGTGTTGAGCTCGTGTTCTAAACTGGGTTGGTTCCGAAAAGGCAAACAAGTGCATTGCCGGATTGTGAAGGATGGGTTTGAGTCCAATCTATCAGTTGCTAATGCTCTTTTCCATTTATATGTTAAGATAGTGGATTTGAGTGACGCCCGGAAGGTGTTTGATGATGTTGCTTGTGATGTTCAGAGTGCAAGGAAGCTGTTTGATGTCATGCCTGAAAGGGACATTGTTTCGTGGAATTCGATGATCACCGGCTACACTGAAGTAAGGGATGCAGGCAATGCGAGAGATTTGTTTGAGCGGATGCCCGAGAAGGATGTTGTATCATGGACAATAATGATCAGAGTGTATGCCGCTGCAGGAGACCTTATGACAGCGAGAAAGTTTTTCGAGACAATGCCTTGCAAGAATGTGGTTTCATGGAACTCTATGATTTCAAGTTACTCCCAGCATGGACAACTTGAACAAGCATTGGATCTCTTTTCCAAATGCAATCGGTTGGGTGCTTTAGAATTTGGAAAGTGGGTACACTACTTGATAGAAGACTGGTCTCAGTTTGGAGCCATTTTGGGGACTGCCCTTATCGATATGTATGCAAAGTGCGGCGATATAAATAGAGCTTTCACACTTTTTATCAAGATGGGAAAGAGGGATGTATTTTGTTGGAATAACAGAAGACGCCATCAAGATGTACTCATTGATGCAAAAAAAAAAGGGTTGAAGCCGAATGACTTCACCTTAACTGCTGCTCTATTCGCTTGTAGCCATGGAGGCTTAGTAAAGGAAGGTGAAGGAATCTTCCATTCCATGGAGAGGGATTTTGGGGTTGAACCAAAACTCCAGCATTATGGCTGCATAATTGACCTACTGAGCCGAAACGGTCAGTTGGAGGAAGCAGTACGTCTATTTAAGGCAATGCCGTATAAGCCTGACATAGCAATATGGGGAGCTTTGCTTGGCAGTTGCAGAGATATAAAGAAAGCTACAGAGATGGAAGCAAATGAATCAGGAGTTTATGTGCTCTTGGCTAACATGCATGCCTCAGTAGGGCAATGGCCGGAGGCTCAAAGTGCAAGAGAAATGATGGAAGAAAAGAATATTTGGAAGAACACAGGGCATAGTAATGTTTATACTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

483

Amino Acids

55.16

Weight (kDa)

8.33

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 64 - 112 3.1e-09 PPR repeat family
PPR PF01535 69 - 96 8.8e-06 PPR repeat
PPR_2 PF13041 240 - 267 1.6e-06 PPR repeat family
PPR PF01535 243 - 270 2.4e-07 PPR repeat
E_motif PF20431 431 - 480 1.1e-07 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014806)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29410
malus_domestica MD01G1200000.v1.1 MD07G1267900.v1.1
prunus_persica Prupe.2G293600_v2.0.a1
pyrus_communis pycom01g21010 pycom07g24550
rosa_chinensis RchiOBHm_Chr1g0377181 RchiOBHm_Chr1g0377191
rosa_laevigata RLG00000026538
rosa_multiflora Rmu_ssc0000155.1_g000013 Rmu_ssc0000155.1_g000014
rosa_roxburghii Rroxscaffold_4G00281400
rosa_rugosa Rorug01G0401900
rosa_samantha Rh1AG419300 Rh1BG378400 Rh1CG392400
rosa_wichuraiana Rw1G036780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1120
AccBSI CCGCTC 1 cut(s) 613
AciI CCGC 5 cut(s) 41, 118, 613, 666, 915
AclWI GGATC 1 cut(s) 795
AcoI YGGCCR 1 cut(s) 1367
AcsI RAATTY 3 cut(s) 107, 550, 824
AcuI CTGAAG 1 cut(s) 594
AcyI GRCGYC 2 cut(s) 459, 991
AfaI GTAC 3 cut(s) 840, 1005, 1212
AfiI CCNNNNNNNGG 5 cut(s) 281, 882, 1120, 1125, 1359
AgsI TTSAA 6 cut(s) 64, 203, 750, 776, 1033, 1142
AloI GAACNNNNNNTCC 2 cut(s) 1134, 1166
AluBI AGCT 6 cut(s) 19, 324, 511, 932, 1262, 1295
AluI AGCT 6 cut(s) 19, 324, 511, 932, 1262, 1295
Alw21I GWGCWC 5 cut(s) 21, 125, 178, 326, 1335
Alw26I GTCTC 4 cut(s) 242, 669, 698, 867
AlwI GGATC 1 cut(s) 795
Ama87I CYCGRG 1 cut(s) 620
AoxI GGCC 1 cut(s) 1367
ApeKI GCWGC 3 cut(s) 668, 1058, 1164
ApoI RAATTY 3 cut(s) 107, 550, 824
Asp700I GAANNNNTTC 1 cut(s) 1043
AsuC2I CCSGG 1 cut(s) 463
AsuHPI GGTGA 3 cut(s) 553, 1039, 1112
AvaI CYCGRG 1 cut(s) 620
BanII GRGCYC 2 cut(s) 21, 326
BauI CACGAG 1 cut(s) 325
BbsI GAAGAC 2 cut(s) 861, 994
Bbv12I GWGCWC 5 cut(s) 21, 125, 178, 326, 1335
BbvI GCAGC 3 cut(s) 655, 1045, 1151
BccI CCATC 5 cut(s) 380, 946, 1002, 1297, 1390
BceAI ACGGC 1 cut(s) 1216
BcgI CGANNNNNNTGC 2 cut(s) 887, 921
BclI TGATCA 2 cut(s) 558, 651
BcnI CCSGG 1 cut(s) 463
BcoDI GTCTC 4 cut(s) 242, 669, 698, 867
BfmI CTRYAG 2 cut(s) 669, 1296
BglI GCCNNNNNGGC 1 cut(s) 1083
BisI GCNGC 6 cut(s) 41, 666, 669, 916, 1059, 1165
BlsI GCNGC 6 cut(s) 42, 667, 670, 917, 1060, 1166
Bme1390I CCNGG 1 cut(s) 463
BmeT110I CYCGRG 1 cut(s) 620
BmiI GGNNCC 3 cut(s) 136, 347, 874
BmrFI CCNGG 1 cut(s) 463
BmrI ACTGGG 1 cut(s) 347
BmsI GCATC 3 cut(s) 574, 606, 1003
BmuI ACTGGG 1 cut(s) 347
BpiI GAAGAC 2 cut(s) 861, 994
BpmI CTGGAG 1 cut(s) 1136
BpuMI CCSGG 1 cut(s) 463
Bsa29I ATCGAT 1 cut(s) 897
BsaHI GRCGYC 2 cut(s) 459, 991
BsaI GGTCTC 3 cut(s) 242, 669, 867
BsaJI CCNNGG 3 cut(s) 138, 1078, 1119
BsaXI ACNNNNNCTCC 6 cut(s) 1074, 1104, 1134, 1164, 1314, 1344
Bsc4I CCNNNNNNNGG 5 cut(s) 281, 882, 1120, 1125, 1359
Bse118I RCCGGY 1 cut(s) 563
Bse1I ACTGG 2 cut(s) 342, 863
Bse3DI GCAATG 6 cut(s) 50, 254, 367, 598, 1233, 1370
BseCI ATCGAT 1 cut(s) 897
BseDI CCNNGG 3 cut(s) 138, 1078, 1119
BseGI GGATG 5 cut(s) 391, 589, 621, 634, 970
BseLI CCNNNNNNNGG 5 cut(s) 281, 882, 1120, 1125, 1359
BseMI GCAATG 6 cut(s) 50, 254, 367, 598, 1233, 1370
BseMII CTCAG 5 cut(s) 42, 191, 878, 1172, 1368
BseNI ACTGG 2 cut(s) 342, 863
BseXI GCAGC 3 cut(s) 655, 1045, 1151
BseYI CCCAGC 1 cut(s) 759
BsgI GTGCAG 1 cut(s) 239
BshFI GGCC 1 cut(s) 1369
BshVI ATCGAT 1 cut(s) 897
BsiHKAI GWGCWC 5 cut(s) 21, 125, 178, 326, 1335
BsiHKCI CYCGRG 1 cut(s) 620
BsiSI CCGG 4 cut(s) 373, 463, 564, 1370
BslFI GGGAC 2 cut(s) 548, 898
BslI CCNNNNNNNGG 5 cut(s) 281, 882, 1120, 1125, 1359
BsmAI GTCTC 4 cut(s) 242, 669, 698, 867
BsmFI GGGAC 2 cut(s) 548, 898
BsnI GGCC 1 cut(s) 1369
Bso31I GGTCTC 3 cut(s) 242, 669, 867
BsoBI CYCGRG 1 cut(s) 620
Bsp1286I GDGCHC 5 cut(s) 21, 125, 178, 326, 1335
Bsp143I GATC 3 cut(s) 558, 651, 787
Bsp19I CCATGG 3 cut(s) 138, 1078, 1119
BspACI CCGC 5 cut(s) 41, 118, 613, 666, 915
BspANI GGCC 1 cut(s) 1369
BspCNI CTCAG 5 cut(s) 41, 190, 877, 1173, 1367
BspDI ATCGAT 1 cut(s) 897
BspHI TCATGA 1 cut(s) 195
BspLI GGNNCC 3 cut(s) 136, 347, 874
BspMAI CTGCAG 1 cut(s) 673
BspPI GGATC 1 cut(s) 795
BspTNI GGTCTC 3 cut(s) 242, 669, 867
BsrBI CCGCTC 1 cut(s) 613
BsrDI GCAATG 6 cut(s) 50, 254, 367, 598, 1233, 1370
BsrFI RCCGGY 1 cut(s) 563
BsrI ACTGG 2 cut(s) 342, 863
BssAI RCCGGY 1 cut(s) 563
BssECI CCNNGG 3 cut(s) 138, 1078, 1119
BssMI GATC 3 cut(s) 558, 651, 787
BssNI GRCGYC 2 cut(s) 459, 991
BssSI CACGAG 1 cut(s) 325
BssT1I CCWWGG 3 cut(s) 138, 1078, 1119
Bst2BI CACGAG 1 cut(s) 325
Bst4CI ACNGT 3 cut(s) 60, 127, 1193
BstACI GRCGYC 2 cut(s) 459, 991
BstAPI GCANNNNNTGC 2 cut(s) 253, 593
BstC8I GCNNGC 3 cut(s) 254, 589, 1350
BstDEI CTNAG 7 cut(s) 13, 28, 177, 864, 1087, 1181, 1354
BstDSI CCRYGG 3 cut(s) 138, 1078, 1119
BstENI CCTNNNNNAGG 1 cut(s) 279
BstF5I GGATG 5 cut(s) 391, 589, 621, 634, 970
BstKTI GATC 3 cut(s) 561, 654, 790
BstMAI GTCTC 4 cut(s) 242, 669, 698, 867
BstMBI GATC 3 cut(s) 558, 651, 787
BstMWI GCNNNNNNNGC 6 cut(s) 253, 593, 1067, 1083, 1237, 1382
BstNSI RCATGY 3 cut(s) 77, 1348, 1352
BstSCI CCNGG 1 cut(s) 461
BstSFI CTRYAG 2 cut(s) 669, 1296
BstV1I GCAGC 3 cut(s) 655, 1045, 1151
BstV2I GAAGAC 2 cut(s) 861, 994
BstX2I RGATCY 1 cut(s) 787
BstXI CCANNNNNNTGG 1 cut(s) 1160
BstYI RGATCY 1 cut(s) 787
Bsu15I ATCGAT 1 cut(s) 897
BsuRI GGCC 1 cut(s) 1369
BsuTUI ATCGAT 1 cut(s) 897
BtgI CCRYGG 3 cut(s) 138, 1078, 1119
BtsCI GGATG 5 cut(s) 391, 589, 621, 634, 970
BtsIMutI CAGTG 1 cut(s) 570
Cac8I GCNNGC 3 cut(s) 254, 589, 1350
CciI TCATGA 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 563
ClaI ATCGAT 1 cut(s) 897
CseI GACGC 2 cut(s) 467, 999
Csp6I GTAC 3 cut(s) 839, 1004, 1211
CviQI GTAC 3 cut(s) 839, 1004, 1211
DdeI CTNAG 7 cut(s) 13, 28, 177, 864, 1087, 1181, 1354
DpnI GATC 3 cut(s) 560, 653, 789
DpnII GATC 3 cut(s) 558, 651, 787
EaeI YGGCCR 1 cut(s) 1367
EciI GGCGGA 1 cut(s) 133
Ecl136II GAGCTC 2 cut(s) 19, 324
Eco130I CCWWGG 3 cut(s) 138, 1078, 1119
Eco24I GRGCYC 2 cut(s) 21, 326
Eco31I GGTCTC 3 cut(s) 242, 669, 867
Eco53kI GAGCTC 2 cut(s) 19, 324
Eco57I CTGAAG 1 cut(s) 594
Eco88I CYCGRG 1 cut(s) 620
EcoICRI GAGCTC 2 cut(s) 19, 324
EcoNI CCTNNNNNAGG 1 cut(s) 279
EcoRI GAATTC 1 cut(s) 550
EcoT14I CCWWGG 3 cut(s) 138, 1078, 1119
EcoT22I ATGCAT 1 cut(s) 1350
EcoT38I GRGCYC 2 cut(s) 21, 326
ErhI CCWWGG 3 cut(s) 138, 1078, 1119
FaqI GGGAC 2 cut(s) 548, 898
FauNDI CATATG 1 cut(s) 313
FbaI TGATCA 2 cut(s) 558, 651
Fnu4HI GCNGC 6 cut(s) 41, 666, 669, 916, 1059, 1165
FokI GGATG 5 cut(s) 398, 596, 628, 641, 977
FriOI GRGCYC 2 cut(s) 21, 326
Fsp4HI GCNGC 6 cut(s) 41, 666, 669, 916, 1059, 1165
GluI GCNGC 6 cut(s) 41, 666, 669, 916, 1059, 1165
GsaI CCCAGC 1 cut(s) 763
GsuI CTGGAG 1 cut(s) 1136
HaeIII GGCC 1 cut(s) 1369
HapII CCGG 4 cut(s) 373, 463, 564, 1370
HgaI GACGC 2 cut(s) 467, 999
Hin1I GRCGYC 2 cut(s) 459, 991
HinfI GANTC 5 cut(s) 199, 285, 395, 1107, 1316
HpaII CCGG 4 cut(s) 373, 463, 564, 1370
HphI GGTGA 3 cut(s) 553, 1039, 1112
Hpy166II GTNNAC 1 cut(s) 841
Hpy188I TCNGA 5 cut(s) 31, 56, 350, 498, 656
Hpy188III TCNNGA 6 cut(s) 196, 703, 949, 998, 1320, 1449
Hpy8I GTNNAC 1 cut(s) 841
HpyAV CCTTC 5 cut(s) 376, 460, 619, 1091, 1097
HpyCH4III ACNGT 3 cut(s) 60, 127, 1193
HpyCH4IV ACGT 1 cut(s) 1213
HpyF10VI GCNNNNNNNGC 6 cut(s) 253, 593, 1067, 1083, 1237, 1382
HpyF3I CTNAG 7 cut(s) 13, 28, 177, 864, 1087, 1181, 1354
HpySE526I ACGT 1 cut(s) 1213
Hsp92I GRCGYC 2 cut(s) 459, 991
Ksp22I TGATCA 2 cut(s) 558, 651
Kzo9I GATC 3 cut(s) 558, 651, 787
LmnI GCTCC 3 cut(s) 120, 872, 1259
Lsp1109I GCAGC 3 cut(s) 655, 1045, 1151
LweI GCATC 3 cut(s) 574, 606, 1003
MaeII ACGT 1 cut(s) 1213
MaeIII GTNAC 2 cut(s) 455, 752
MalI GATC 3 cut(s) 560, 653, 789
MbiI CCGCTC 1 cut(s) 613
MboI GATC 3 cut(s) 558, 651, 787
MboII GAAGA 5 cut(s) 866, 999, 1102, 1412, 1429
MflI RGATCY 1 cut(s) 787
MhlI GDGCHC 5 cut(s) 21, 125, 178, 326, 1335
MluCI AATT 5 cut(s) 32, 107, 550, 824, 1170
MlyI GAGTC 2 cut(s) 279, 404
MmeI TCCRAC 2 cut(s) 956, 1179
Mph1103I ATGCAT 1 cut(s) 1350
MroXI GAANNNNTTC 1 cut(s) 1043
MseI TTAA 3 cut(s) 438, 1052, 1221
MslI CAYNNNNRTG 3 cut(s) 432, 999, 1434
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 4 cut(s) 373, 463, 564, 1370
MspR9I CCNGG 1 cut(s) 463
MwoI GCNNNNNNNGC 6 cut(s) 253, 593, 1067, 1083, 1237, 1382
NciI CCSGG 1 cut(s) 463
NcoI CCATGG 3 cut(s) 138, 1078, 1119
NdeI CATATG 1 cut(s) 313
NdeII GATC 3 cut(s) 558, 651, 787
NlaIV GGNNCC 3 cut(s) 136, 347, 874
NmuCI GTSAC 1 cut(s) 455
NsiI ATGCAT 1 cut(s) 1350
NspI RCATGY 3 cut(s) 77, 1348, 1352
PaeI GCATGC 1 cut(s) 1352
PagI TCATGA 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 551
PdmI GAANNNNTTC 1 cut(s) 1043
PfeI GAWTC 3 cut(s) 199, 1107, 1316
PflMI CCANNNNNTGG 1 cut(s) 1120
PkrI GCNGC 6 cut(s) 42, 667, 670, 917, 1060, 1166
PleI GAGTC 2 cut(s) 279, 403
PpsI GAGTC 2 cut(s) 279, 403
Psp124BI GAGCTC 2 cut(s) 21, 326
PspFI CCCAGC 1 cut(s) 759
PspN4I GGNNCC 3 cut(s) 136, 347, 874
PstI CTGCAG 1 cut(s) 673
PsuI RGATCY 1 cut(s) 787
RsaI GTAC 3 cut(s) 840, 1005, 1212
RsaNI GTAC 3 cut(s) 839, 1004, 1211
RseI CAYNNNNRTG 3 cut(s) 432, 999, 1434
SacI GAGCTC 2 cut(s) 21, 326
SaqAI TTAA 3 cut(s) 438, 1052, 1221
SatI GCNGC 6 cut(s) 41, 666, 669, 916, 1059, 1165
Sau3AI GATC 3 cut(s) 558, 651, 787
SchI GAGTC 2 cut(s) 279, 404
ScrFI CCNGG 1 cut(s) 463
SduI GDGCHC 5 cut(s) 21, 125, 178, 326, 1335
SfaNI GCATC 3 cut(s) 574, 606, 1003
SfcI CTRYAG 2 cut(s) 669, 1296
SmiMI CAYNNNNRTG 3 cut(s) 432, 999, 1434
SphI GCATGC 1 cut(s) 1352
Sse9I AATT 5 cut(s) 32, 107, 550, 824, 1170
SsiI CCGC 5 cut(s) 41, 118, 613, 666, 915
SspI AATATT 1 cut(s) 1411
SstI GAGCTC 2 cut(s) 21, 326
StyD4I CCNGG 1 cut(s) 461
StyI CCWWGG 3 cut(s) 138, 1078, 1119
TaaI ACNGT 3 cut(s) 60, 127, 1193
TaiI ACGT 1 cut(s) 1216
TaqI TCGA 4 cut(s) 264, 554, 702, 897
TasI AATT 5 cut(s) 32, 107, 550, 824, 1170
TatI WGTACW 1 cut(s) 1003
TauI GCSGC 3 cut(s) 43, 668, 918
TfiI GAWTC 3 cut(s) 199, 1107, 1316
Tru1I TTAA 3 cut(s) 438, 1052, 1221
Tru9I TTAA 3 cut(s) 438, 1052, 1221
TscAI CASTG 1 cut(s) 577
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 3 cut(s) 668, 1058, 1164
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 3 cut(s) 282, 720, 1329
TspRI CASTG 1 cut(s) 577
Van91I CCANNNNNTGG 1 cut(s) 1120
XagI CCTNNNNNAGG 1 cut(s) 279
XapI RAATTY 3 cut(s) 107, 550, 824
XceI RCATGY 3 cut(s) 77, 1348, 1352
XmnI GAANNNNTTC 1 cut(s) 1043
Zsp2I ATGCAT 1 cut(s) 1350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.