pycom07g24550

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0014806
Physical Location & Seq
Reverse (-)
25216448 .. 25217032
585 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g24550.1

Sequence Viewer

Length: 525 bp
ATGCAAGCCATAGCTTATTCCTTAGACTTCACTCTCTCAAAACTATTGCCACAATGCGCGTTCAAACAGTTGCAGCAAATCCCGGCCCTCATCGTCACAACCCCTCTCAACCAAAACATCCAAATTTTCTCAAAATTTCTCCGGCGGAGCACCGAGTTCGGATCCATGGAGTATCCCAATCTCATATTTTCCCAACTGGGTCATGAACTCAGTAACGATGTTGTGATTCAGAATGCCATGATCAGAGGGTACGATATCAATGGGCCCTTCGAGCAATGCGTCTCAGTGTTTGATGAAATGCCTCTGAGAGGAAAACAAGTGCATTGCCATATTGTAAAGCATGGGTTCGAGTCAAATCTAGCGGTTGCTAATGCGGTTTTCAATATGTATGTTAAGATGCTGGATTACTGTGACTCTGGCGTTATAAATTATAGGACTTTGAATGATGCCAGCAAGGTGTTCGATGATATGTGTGTGAAACCTATAGAATTGTCAAACCGCATGATTTCGCGTTACACGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

175

Amino Acids

19.84

Weight (kDa)

6.4

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014806)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29410
malus_domestica MD01G1200000.v1.1 MD07G1267900.v1.1
prunus_persica Prupe.2G293600_v2.0.a1
pyrus_communis pycom01g21010 pycom07g24550
rosa_chinensis RchiOBHm_Chr1g0377181 RchiOBHm_Chr1g0377191
rosa_laevigata RLG00000026538
rosa_multiflora Rmu_ssc0000155.1_g000013 Rmu_ssc0000155.1_g000014
rosa_roxburghii Rroxscaffold_4G00281400
rosa_rugosa Rorug01G0401900
rosa_samantha Rh1AG419300 Rh1BG378400 Rh1CG392400
rosa_wichuraiana Rw1G036780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 425
AccII CGCG 2 cut(s) 59, 511
AciI CCGC 4 cut(s) 145, 362, 374, 499
AclWI GGATC 2 cut(s) 156, 169
AcsI RAATTY 2 cut(s) 123, 134
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 308
AgsI TTSAA 3 cut(s) 64, 382, 442
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 286
AlwI GGATC 2 cut(s) 156, 169
AoxI GGCC 2 cut(s) 84, 263
ApaI GGGCCC 1 cut(s) 267
ApeKI GCWGC 1 cut(s) 73
ApoI RAATTY 2 cut(s) 123, 134
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 3 cut(s) 85, 263, 264
AsuC2I CCSGG 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 267
BamHI GGATCC 1 cut(s) 161
BanII GRGCYC 1 cut(s) 267
BauI CACGAG 1 cut(s) 517
Bbv12I GWGCWC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 85
BcgI CGANNNNNNTGC 4 cut(s) 139, 173, 442, 476
BciVI GTATCC 1 cut(s) 183
BclI TGATCA 1 cut(s) 240
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 286
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 483
BfuI GTATCC 1 cut(s) 183
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 83
BmgT120I GGNCC 3 cut(s) 85, 263, 264
BmiI GGNNCC 2 cut(s) 163, 265
BmrFI CCNGG 1 cut(s) 83
BmrI ACTGGG 1 cut(s) 206
BmsI GCATC 2 cut(s) 387, 436
BmuI ACTGGG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse1I ACTGG 1 cut(s) 201
Bse3DI GCAATG 2 cut(s) 281, 322
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 308
BseMI GCAATG 2 cut(s) 281, 322
BseMII CTCAG 3 cut(s) 223, 296, 297
BseNI ACTGG 1 cut(s) 201
BseSI GKGCMC 1 cut(s) 267
BseXI GCAGC 1 cut(s) 85
Bsh1236I CGCG 2 cut(s) 59, 511
BshFI GGCC 2 cut(s) 86, 265
BsiHKAI GWGCWC 1 cut(s) 152
BsiSI CCGG 2 cut(s) 83, 142
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 1 cut(s) 286
BsmBI CGTCTC 1 cut(s) 286
BsmI GAATGC 1 cut(s) 238
BsnI GGCC 2 cut(s) 86, 265
Bsp120I GGGCCC 1 cut(s) 263
Bsp1286I GDGCHC 2 cut(s) 152, 267
Bsp143I GATC 2 cut(s) 161, 240
Bsp19I CCATGG 1 cut(s) 165
BspACI CCGC 4 cut(s) 145, 362, 374, 499
BspANI GGCC 2 cut(s) 86, 265
BspCNI CTCAG 3 cut(s) 222, 296, 297
BspFNI CGCG 2 cut(s) 59, 511
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 2 cut(s) 163, 265
BspPI GGATC 2 cut(s) 156, 169
BsrDI GCAATG 2 cut(s) 281, 322
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 2 cut(s) 161, 240
BssSI CACGAG 1 cut(s) 517
BssT1I CCWWGG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 517
Bst4CI ACNGT 2 cut(s) 69, 410
BstC8I GCNNGC 2 cut(s) 6, 451
BstDEI CTNAG 4 cut(s) 22, 209, 283, 305
BstDSI CCRYGG 1 cut(s) 165
BstENI CCTNNNNNAGG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 117
BstFNI CGCG 2 cut(s) 59, 511
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 2 cut(s) 164, 243
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 2 cut(s) 161, 240
BstMWI GCNNNNNNNGC 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 483
BstSLI GKGCMC 1 cut(s) 267
BstUI CGCG 2 cut(s) 59, 511
BstV1I GCAGC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
BsuI GTATCC 1 cut(s) 183
BsuRI GGCC 2 cut(s) 86, 265
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 2 cut(s) 6, 451
CciI TCATGA 1 cut(s) 202
CfoI GCGC 1 cut(s) 59
Cfr13I GGNCC 3 cut(s) 85, 263, 264
CseI GACGC 1 cut(s) 268
Csp6I GTAC 1 cut(s) 250
CviAII CATG 5 cut(s) 166, 203, 238, 341, 502
CviJI RGCY 4 cut(s) 8, 14, 86, 265
CviKI_1 RGCY 4 cut(s) 8, 14, 86, 265
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 4 cut(s) 22, 209, 283, 305
DpnI GATC 2 cut(s) 163, 242
DpnII GATC 2 cut(s) 161, 240
EciI GGCGGA 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 267
Eco32I GATATC 1 cut(s) 256
EcoNI CCTNNNNNAGG 1 cut(s) 306
EcoO109I RGGNCCY 1 cut(s) 264
EcoRV GATATC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 5 cut(s) 169, 206, 241, 344, 505
FatI CATG 5 cut(s) 165, 202, 237, 340, 501
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 74
FokI GGATG 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 74
FspBI CTAG 1 cut(s) 359
GlaI GCGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 74
HaeIII GGCC 2 cut(s) 86, 265
HapII CCGG 2 cut(s) 83, 142
HgaI GACGC 1 cut(s) 268
HhaI GCGC 1 cut(s) 59
Hin1II CATG 5 cut(s) 169, 206, 241, 344, 505
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HinfI GANTC 3 cut(s) 226, 350, 413
HpaII CCGG 2 cut(s) 83, 142
Hpy188I TCNGA 4 cut(s) 161, 231, 245, 306
Hpy188III TCNNGA 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 2 cut(s) 69, 410
HpyCH4V TGCA 3 cut(s) 4, 73, 322
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
HpyF3I CTNAG 4 cut(s) 22, 209, 283, 305
Hsp92II CATG 5 cut(s) 169, 206, 241, 344, 505
HspAI GCGC 1 cut(s) 57
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 2 cut(s) 161, 240
LmnI GCTCC 1 cut(s) 147
LpnPI CCDG 6 cut(s) 96, 155, 182, 386, 402, 463
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 2 cut(s) 387, 436
MaeI CTAG 1 cut(s) 359
MaeIII GTNAC 4 cut(s) 94, 212, 410, 512
MalI GATC 2 cut(s) 163, 242
MboI GATC 2 cut(s) 161, 240
MflI RGATCY 1 cut(s) 161
MhlI GDGCHC 2 cut(s) 152, 267
MluCI AATT 4 cut(s) 123, 134, 427, 488
MlyI GAGTC 2 cut(s) 359, 407
MnlI CCTC 5 cut(s) 98, 114, 239, 302, 312
MseI TTAA 1 cut(s) 393
MspI CCGG 2 cut(s) 83, 142
MspR9I CCNGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 238
MvnI CGCG 2 cut(s) 59, 511
MwoI GCNNNNNNNGC 1 cut(s) 271
NciI CCSGG 1 cut(s) 83
NcoI CCATGG 1 cut(s) 165
NdeII GATC 2 cut(s) 161, 240
NlaIII CATG 5 cut(s) 169, 206, 241, 344, 505
NlaIV GGNNCC 2 cut(s) 163, 265
NmuCI GTSAC 2 cut(s) 94, 410
PagI TCATGA 1 cut(s) 202
PcsI WCGNNNNNNNCGW 2 cut(s) 276, 515
PctI GAATGC 1 cut(s) 238
PfeI GAWTC 1 cut(s) 226
PkrI GCNGC 1 cut(s) 75
PleI GAGTC 2 cut(s) 358, 407
PpsI GAGTC 2 cut(s) 358, 407
PsiI TTATAA 1 cut(s) 425
PspN4I GGNNCC 2 cut(s) 163, 265
PspOMI GGGCCC 1 cut(s) 263
PspPI GGNCC 3 cut(s) 85, 263, 264
PsuI RGATCY 1 cut(s) 161
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 1 cut(s) 74
Sau3AI GATC 2 cut(s) 161, 240
Sau96I GGNCC 3 cut(s) 85, 263, 264
SchI GAGTC 2 cut(s) 359, 407
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 2 cut(s) 152, 267
SetI ASST 3 cut(s) 16, 459, 484
SfaNI GCATC 2 cut(s) 387, 436
SfcI CTRYAG 1 cut(s) 483
Sse9I AATT 4 cut(s) 123, 134, 427, 488
SsiI CCGC 4 cut(s) 145, 362, 374, 499
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 2 cut(s) 69, 410
TaqI TCGA 3 cut(s) 270, 348, 462
TasI AATT 4 cut(s) 123, 134, 427, 488
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 1 cut(s) 291
TseFI GTSAC 2 cut(s) 94, 410
TseI GCWGC 1 cut(s) 73
Tsp45I GTSAC 2 cut(s) 94, 410
TspDTI ATGAA 2 cut(s) 219, 309
TspRI CASTG 1 cut(s) 291
XagI CCTNNNNNAGG 1 cut(s) 306
XapI RAATTY 2 cut(s) 123, 134
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.