Prupe.2G293600_v2.0.a1

Pentatricopeptide repeat-containing protein At3g29230-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
28584597 .. 28586327
1731 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G293600.1

Sequence Viewer

Length: 1731 bp
ATGGCTTGTTCCTTAGAGCTCAACCTCTCAAAAGTATTGCCACAATGCACATTCAGACAGTTAAAGCAAATACACGCCCTCATTGTCACAACCTTTCTCAACCAAAACATCCAAATTTTCTCAAAATTTCTTCGGCGGAGCACCGAGTTTGGAACTATGGAGTATCCCAATCTCATATTTTCCCAATTGGGTCCTGAACTCAGTAACGACATTATGATTCAGAATGCCATGATTAGAGGGTATGATACAAATGGTCCCTTCGAGAAATGCGTCTCATTGTATGATGAAATGCCTCTTAGAGGACTCAAACCCCATAATTTCACCTACCCATATGTCTTAAACTCGTGCACTAAAATGGGTTGGTACAGAAAAGGGAAACAAGTGCATTGCCATATAGTAAAGCATGGGTTCGAGTCATATCTAGCAGTTGCAAATGCGCTTTTCAATATGTATGTTAAAAAGTTGGATTCTTGTGACCCGGCTGTTGTCGATCAAGGGACTTCGAATGATGCCCGCAGGGTTTTTGATGATATGTGTGTGAAACCTGTAGAAGTATGGAACCGCATGATTTCACGTTATGTCAGCGTTTGTGATGTTCAGAGTGCAAGAAAGCTGTTTGATGTAATGCCTGAAAGGGACGTTGTTTCATGGAATTCTATGGTTTCTGGTTATGCTGAAGTAAGGGATGTAGGTAATGCGAGAGATTTGTTTGAGCGGATGCCAGAGAAGGATGTTGTCTCTTGGACGTTGATGATCGGAGTGTATGCCAATGCAGGTGACCTTATAACAGCAAGAAAGTTTTTTGAGACAATGCCATGCAAGAATGTGGTTTCTTGGAACTCTATGATATCAAGTTACACCCAACATGTACAGTATGAAGAAGCATTGGATCTTTTTGTCCAAATGCAATCGAAAGATGTAGTTCCAGATGCACAAACATTCGTTTCTGTTCTGTCGGCTTGTTCCCACTTGGGAGCTCTAGAGTTTGGAAAGTGGACACACTACTTGATAGAAGATTGGTCTCATTTTGGAACCATTTTAGGAACTGCCCTTATAGATATGTATGCAAAGTGCGGGGACATAAATAGAGCTTTTACGCTTTTTATCAAGATGGGAAAGAGGGATGTATTTTGCTGGAATGTTATGATTAGATCAGTAGCTATTCATGGAAGGACAGAAGATGCCATGAAGGTATATTCATTGATGCAAAAGGAAGGATTGAAGCCGAATGACTTCACATTCACCGCTGCTCTCTTTGCTTGCAGCCATGGAGGCTTGGTAGAAGAAGGTGAAAGAATCTTCTATGCTATGGAGAGAGAATTTGGTGTTGTACCAAAGCTCGAACATTTTGGCTGCCTCATTGATTTACTGAGCCGAAATGGTCAGCTGGAGGAAGCACTACGTATAGTAAAGGAAATGCCATATAAGCCTGACATTGCCATTTGGGGAGCCTTGCTTGGGGGTTGCAGACTAAGAAGTCACTTTAAGTTGGCAGAGGAAGTGATGGAGAGGGCTACTGGGTTGGAGACAAATGAATCTGGGGTTTATGTGCTCTTGTCGAATACGCATGCCTCAGCAGGGAAATGGCCAGAGGCTCAAAGCGCAAGAGAGAACATGGATGAGAAGAAAATTTGGAAGAAAACAGGGTGCAGTCATGTTTATGCTTCTAATGTAACCTTGGAACCCCGGAGCAGAAGCTATTTAGATTACAATGGAGAGGAGAAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

577

Amino Acids

65.67

Weight (kDa)

6.45

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014806)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 785
AarI CACCTGC 1 cut(s) 764
AasI GACNNNNNNGTC 1 cut(s) 1476
Acc36I ACCTGC 1 cut(s) 764
AccBSI CCGCTC 1 cut(s) 715
AciI CCGC 6 cut(s) 136, 514, 562, 715, 1074, 1245
AclWI GGATC 1 cut(s) 897
AcoI YGGCCR 1 cut(s) 1586
AcsI RAATTY 5 cut(s) 114, 125, 652, 1319, 1629
AcuI CTGAAG 1 cut(s) 696
AfaI GTAC 3 cut(s) 365, 870, 1332
AfiI CCNNNNNNNGG 3 cut(s) 299, 1458, 1578
AflIII ACRYGT 1 cut(s) 865
AgsI TTSAA 2 cut(s) 445, 1222
AluBI AGCT 8 cut(s) 19, 613, 977, 1091, 1160, 1339, 1387, 1698
AluI AGCT 8 cut(s) 19, 613, 977, 1091, 1160, 1339, 1387, 1698
Alw21I GWGCWC 5 cut(s) 21, 143, 350, 979, 1554
Alw26I GTCTC 5 cut(s) 277, 742, 800, 1026, 1520
Alw44I GTGCAC 1 cut(s) 346
AlwI GGATC 1 cut(s) 897
AoxI GGCC 1 cut(s) 1586
ApaLI GTGCAC 1 cut(s) 346
ApeKI GCWGC 3 cut(s) 1247, 1263, 1353
ApoI RAATTY 5 cut(s) 114, 125, 652, 1319, 1629
Asp700I GAANNNNTTC 1 cut(s) 1232
AspLEI GCGC 2 cut(s) 439, 1604
AspS9I GGNCC 2 cut(s) 191, 254
AsuC2I CCSGG 2 cut(s) 479, 1687
AsuHPI GGTGA 4 cut(s) 313, 788, 1234, 1301
AsuII TTCGAA 1 cut(s) 503
AvaII GGWCC 2 cut(s) 191, 254
BaeGI GKGCMC 1 cut(s) 350
BalI TGGCCA 1 cut(s) 1588
BanII GRGCYC 2 cut(s) 21, 979
BauI CACGAG 1 cut(s) 343
Bbv12I GWGCWC 5 cut(s) 21, 143, 350, 979, 1554
BbvCI CCTCAGC 1 cut(s) 1573
BbvI GCAGC 3 cut(s) 1234, 1275, 1340
BccI CCATC 2 cut(s) 1105, 1498
BciVI GTATCC 1 cut(s) 174
BcnI CCSGG 2 cut(s) 479, 1687
BcoDI GTCTC 5 cut(s) 277, 742, 800, 1026, 1520
BfaI CTAG 2 cut(s) 422, 980
BfmI CTRYAG 1 cut(s) 546
BfuAI ACCTGC 1 cut(s) 764
BfuI GTATCC 1 cut(s) 174
BglI GCCNNNNNGGC 1 cut(s) 1272
BisI GCNGC 3 cut(s) 1248, 1264, 1354
BlsI GCNGC 3 cut(s) 1249, 1265, 1355
Bme1390I CCNGG 2 cut(s) 479, 1687
Bme18I GGWCC 2 cut(s) 191, 254
BmgT120I GGNCC 2 cut(s) 191, 254
BmiI GGNNCC 6 cut(s) 192, 256, 560, 1033, 1450, 1683
BmrFI CCNGG 2 cut(s) 479, 1687
BmrI ACTGGG 1 cut(s) 1527
BmsI GCATC 5 cut(s) 499, 708, 919, 1171, 1194
BmuI ACTGGG 1 cut(s) 1527
BpmI CTGGAG 1 cut(s) 1409
Bpu10I CCTNAGC 1 cut(s) 1573
Bpu14I TTCGAA 1 cut(s) 503
BpuMI CCSGG 2 cut(s) 479, 1687
BsaAI YACGTR 1 cut(s) 1403
BsaI GGTCTC 1 cut(s) 1026
BsaJI CCNNGG 3 cut(s) 1267, 1677, 1685
BsaXI ACNNNNNCTCC 2 cut(s) 1263, 1293
Bsc4I CCNNNNNNNGG 3 cut(s) 299, 1458, 1578
Bse1I ACTGG 1 cut(s) 1522
Bse3DI GCAATG 2 cut(s) 385, 1434
BseDI CCNNGG 3 cut(s) 1267, 1677, 1685
BseGI GGATG 6 cut(s) 108, 691, 723, 736, 1129, 1624
BseLI CCNNNNNNNGG 3 cut(s) 299, 1458, 1578
BseMI GCAATG 2 cut(s) 385, 1434
BseMII CTCAG 3 cut(s) 214, 1361, 1587
BseNI ACTGG 1 cut(s) 1522
BseSI GKGCMC 1 cut(s) 350
BseXI GCAGC 3 cut(s) 1234, 1275, 1340
BsgI GTGCAG 1 cut(s) 1669
BshFI GGCC 1 cut(s) 1588
BsiHKAI GWGCWC 5 cut(s) 21, 143, 350, 979, 1554
BsiSI CCGG 2 cut(s) 479, 1687
BslFI GGGAC 4 cut(s) 240, 511, 650, 1091
BslI CCNNNNNNNGG 3 cut(s) 299, 1458, 1578
BsmAI GTCTC 5 cut(s) 277, 742, 800, 1026, 1520
BsmBI CGTCTC 1 cut(s) 277
BsmFI GGGAC 4 cut(s) 240, 511, 650, 1091
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 1 cut(s) 1588
Bso31I GGTCTC 1 cut(s) 1026
Bsp119I TTCGAA 1 cut(s) 503
Bsp1286I GDGCHC 5 cut(s) 21, 143, 350, 979, 1554
Bsp1407I TGTACA 1 cut(s) 868
Bsp143I GATC 4 cut(s) 490, 753, 889, 1151
Bsp19I CCATGG 1 cut(s) 1267
BspACI CCGC 6 cut(s) 136, 514, 562, 715, 1074, 1245
BspANI GGCC 1 cut(s) 1588
BspCNI CTCAG 3 cut(s) 213, 1362, 1586
BspLI GGNNCC 6 cut(s) 192, 256, 560, 1033, 1450, 1683
BspMI ACCTGC 1 cut(s) 764
BspPI GGATC 1 cut(s) 897
BspT104I TTCGAA 1 cut(s) 503
BspTNI GGTCTC 1 cut(s) 1026
BsrBI CCGCTC 1 cut(s) 715
BsrDI GCAATG 2 cut(s) 385, 1434
BsrGI TGTACA 1 cut(s) 868
BsrI ACTGG 1 cut(s) 1522
BssECI CCNNGG 3 cut(s) 1267, 1677, 1685
BssMI GATC 4 cut(s) 490, 753, 889, 1151
BssSI CACGAG 1 cut(s) 343
BssT1I CCWWGG 2 cut(s) 1267, 1677
Bst2BI CACGAG 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 60, 873
BstAUI TGTACA 1 cut(s) 868
BstBAI YACGTR 1 cut(s) 1403
BstBI TTCGAA 1 cut(s) 503
BstC8I GCNNGC 3 cut(s) 514, 1261, 1569
BstDEI CTNAG 6 cut(s) 13, 200, 296, 1370, 1472, 1573
BstDSI CCRYGG 1 cut(s) 1267
BstEII GGTNACC 1 cut(s) 776
BstENI CCTNNNNNAGG 1 cut(s) 297
BstF5I GGATG 6 cut(s) 108, 691, 723, 736, 1129, 1624
BstHHI GCGC 2 cut(s) 439, 1604
BstKTI GATC 4 cut(s) 493, 756, 892, 1154
BstMAI GTCTC 5 cut(s) 277, 742, 800, 1026, 1520
BstMBI GATC 4 cut(s) 490, 753, 889, 1151
BstMWI GCNNNNNNNGC 4 cut(s) 1256, 1272, 1426, 1601
BstNSI RCATGY 2 cut(s) 869, 1571
BstPI GGTNACC 1 cut(s) 776
BstSCI CCNGG 2 cut(s) 477, 1685
BstSFI CTRYAG 1 cut(s) 546
BstSLI GKGCMC 1 cut(s) 350
BstSNI TACGTA 1 cut(s) 1403
BstV1I GCAGC 3 cut(s) 1234, 1275, 1340
BstX2I RGATCY 1 cut(s) 889
BstYI RGATCY 1 cut(s) 889
BsuI GTATCC 1 cut(s) 174
BsuRI GGCC 1 cut(s) 1588
BtgI CCRYGG 1 cut(s) 1267
BtsCI GGATG 6 cut(s) 108, 691, 723, 736, 1129, 1624
BveI ACCTGC 1 cut(s) 764
Cac8I GCNNGC 3 cut(s) 514, 1261, 1569
CfoI GCGC 2 cut(s) 439, 1604
Cfr13I GGNCC 2 cut(s) 191, 254
CseI GACGC 1 cut(s) 259
Csp6I GTAC 3 cut(s) 364, 869, 1331
CviQI GTAC 3 cut(s) 364, 869, 1331
DdeI CTNAG 6 cut(s) 13, 200, 296, 1370, 1472, 1573
DpnI GATC 4 cut(s) 492, 755, 891, 1153
DpnII GATC 4 cut(s) 490, 753, 889, 1151
DrdI GACNNNNNNGTC 1 cut(s) 1476
DseDI GACNNNNNNGTC 1 cut(s) 1476
EaeI YGGCCR 1 cut(s) 1586
EciI GGCGGA 1 cut(s) 151
Ecl136II GAGCTC 2 cut(s) 19, 977
Eco105I TACGTA 1 cut(s) 1403
Eco130I CCWWGG 2 cut(s) 1267, 1677
Eco24I GRGCYC 2 cut(s) 21, 979
Eco31I GGTCTC 1 cut(s) 1026
Eco32I GATATC 1 cut(s) 849
Eco47I GGWCC 2 cut(s) 191, 254
Eco53kI GAGCTC 2 cut(s) 19, 977
Eco57I CTGAAG 1 cut(s) 696
Eco91I GGTNACC 1 cut(s) 776
EcoICRI GAGCTC 2 cut(s) 19, 977
EcoNI CCTNNNNNAGG 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 191
EcoO65I GGTNACC 1 cut(s) 776
EcoRI GAATTC 1 cut(s) 652
EcoRV GATATC 1 cut(s) 849
EcoT14I CCWWGG 2 cut(s) 1267, 1677
EcoT38I GRGCYC 2 cut(s) 21, 979
ErhI CCWWGG 2 cut(s) 1267, 1677
Esp3I CGTCTC 1 cut(s) 277
FaqI GGGAC 4 cut(s) 240, 511, 650, 1091
FauI CCCGC 2 cut(s) 521, 1067
FauNDI CATATG 1 cut(s) 331
Fnu4HI GCNGC 3 cut(s) 1248, 1264, 1354
FokI GGATG 6 cut(s) 95, 698, 730, 743, 1136, 1631
FriOI GRGCYC 2 cut(s) 21, 979
Fsp4HI GCNGC 3 cut(s) 1248, 1264, 1354
FspBI CTAG 2 cut(s) 422, 980
GlaI GCGC 2 cut(s) 438, 1603
GluI GCNGC 3 cut(s) 1248, 1264, 1354
GsuI CTGGAG 1 cut(s) 1409
HaeIII GGCC 1 cut(s) 1588
HapII CCGG 2 cut(s) 479, 1687
HgaI GACGC 1 cut(s) 259
HhaI GCGC 2 cut(s) 439, 1604
Hin6I GCGC 2 cut(s) 437, 1602
HinP1I GCGC 2 cut(s) 437, 1602
HinfI GANTC 6 cut(s) 217, 303, 413, 467, 1296, 1535
HpaII CCGG 2 cut(s) 479, 1687
HphI GGTGA 4 cut(s) 313, 788, 1234, 1301
Hpy166II GTNNAC 2 cut(s) 348, 996
Hpy188I TCNGA 4 cut(s) 56, 222, 600, 758
Hpy188III TCNNGA 5 cut(s) 194, 262, 926, 980, 1108
Hpy8I GTNNAC 2 cut(s) 348, 996
HpyAV CCTTC 6 cut(s) 268, 721, 1164, 1183, 1208, 1280
HpyCH4III ACNGT 2 cut(s) 60, 873
HpyCH4IV ACGT 4 cut(s) 574, 639, 746, 1402
HpyF10VI GCNNNNNNNGC 4 cut(s) 1256, 1272, 1426, 1601
HpyF3I CTNAG 6 cut(s) 13, 200, 296, 1370, 1472, 1573
HpySE526I ACGT 4 cut(s) 574, 639, 746, 1402
HspAI GCGC 2 cut(s) 437, 1602
Kzo9I GATC 4 cut(s) 490, 753, 889, 1151
LmnI GCTCC 4 cut(s) 138, 974, 1448, 1689
Lsp1109I GCAGC 3 cut(s) 1234, 1275, 1340
LweI GCATC 5 cut(s) 499, 708, 919, 1171, 1194
MaeI CTAG 2 cut(s) 422, 980
MaeII ACGT 4 cut(s) 574, 639, 746, 1402
MaeIII GTNAC 7 cut(s) 85, 203, 473, 776, 854, 1478, 1672
MalI GATC 4 cut(s) 492, 755, 891, 1153
MbiI CCGCTC 1 cut(s) 715
MboI GATC 4 cut(s) 490, 753, 889, 1151
MboII GAAGA 8 cut(s) 122, 890, 1025, 1190, 1291, 1295, 1636, 1648
MfeI CAATTG 1 cut(s) 185
MflI RGATCY 1 cut(s) 889
MhlI GDGCHC 5 cut(s) 21, 143, 350, 979, 1554
MlsI TGGCCA 1 cut(s) 1588
MluCI AATT 7 cut(s) 114, 125, 185, 316, 652, 1319, 1629
MluNI TGGCCA 1 cut(s) 1588
MlyI GAGTC 2 cut(s) 297, 422
MmeI TCCRAC 2 cut(s) 444, 1503
Mox20I TGGCCA 1 cut(s) 1588
MroXI GAANNNNTTC 1 cut(s) 1232
MscI TGGCCA 1 cut(s) 1588
MseI TTAA 4 cut(s) 62, 338, 456, 1485
MslI CAYNNNNRTG 2 cut(s) 353, 1659
Msp20I TGGCCA 1 cut(s) 1588
MspA1I CMGCKG 2 cut(s) 1247, 1387
MspI CCGG 2 cut(s) 479, 1687
MspR9I CCNGG 2 cut(s) 479, 1687
MunI CAATTG 1 cut(s) 185
Mva1269I GAATGC 1 cut(s) 229
MwoI GCNNNNNNNGC 4 cut(s) 1256, 1272, 1426, 1601
NciI CCSGG 2 cut(s) 479, 1687
NcoI CCATGG 1 cut(s) 1267
NdeI CATATG 1 cut(s) 331
NdeII GATC 4 cut(s) 490, 753, 889, 1151
NlaIV GGNNCC 6 cut(s) 192, 256, 560, 1033, 1450, 1683
NmuCI GTSAC 4 cut(s) 85, 473, 776, 1478
NspI RCATGY 2 cut(s) 869, 1571
NspV TTCGAA 1 cut(s) 503
PaeI GCATGC 1 cut(s) 1571
PaqCI CACCTGC 1 cut(s) 764
PciI ACATGT 1 cut(s) 865
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PctI GAATGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 1232
PfeI GAWTC 4 cut(s) 217, 467, 1296, 1535
PkrI GCNGC 3 cut(s) 1249, 1265, 1355
PleI GAGTC 2 cut(s) 297, 421
PpsI GAGTC 2 cut(s) 297, 421
Ppu21I YACGTR 1 cut(s) 1403
PpuMI RGGWCCY 1 cut(s) 191
PscI ACATGT 1 cut(s) 865
PsiI TTATAA 1 cut(s) 785
Psp124BI GAGCTC 2 cut(s) 21, 979
Psp5II RGGWCCY 1 cut(s) 191
PspEI GGTNACC 1 cut(s) 776
PspN4I GGNNCC 6 cut(s) 192, 256, 560, 1033, 1450, 1683
PspPI GGNCC 2 cut(s) 191, 254
PspPPI RGGWCCY 1 cut(s) 191
PsuI RGATCY 1 cut(s) 889
PvuII CAGCTG 1 cut(s) 1387
RsaI GTAC 3 cut(s) 365, 870, 1332
RsaNI GTAC 3 cut(s) 364, 869, 1331
RseI CAYNNNNRTG 2 cut(s) 353, 1659
SacI GAGCTC 2 cut(s) 21, 979
SaqAI TTAA 4 cut(s) 62, 338, 456, 1485
SatI GCNGC 3 cut(s) 1248, 1264, 1354
Sau3AI GATC 4 cut(s) 490, 753, 889, 1151
Sau96I GGNCC 2 cut(s) 191, 254
SchI GAGTC 2 cut(s) 297, 422
ScrFI CCNGG 2 cut(s) 479, 1687
SduI GDGCHC 5 cut(s) 21, 143, 350, 979, 1554
SfaNI GCATC 5 cut(s) 499, 708, 919, 1171, 1194
SfcI CTRYAG 1 cut(s) 546
SfuI TTCGAA 1 cut(s) 503
SinI GGWCC 2 cut(s) 191, 254
SmiMI CAYNNNNRTG 2 cut(s) 353, 1659
SnaBI TACGTA 1 cut(s) 1403
SphI GCATGC 1 cut(s) 1571
Sse9I AATT 7 cut(s) 114, 125, 185, 316, 652, 1319, 1629
SsiI CCGC 6 cut(s) 136, 514, 562, 715, 1074, 1245
SspMI CTAG 2 cut(s) 422, 980
SstI GAGCTC 2 cut(s) 21, 979
StyD4I CCNGG 2 cut(s) 477, 1685
StyI CCWWGG 2 cut(s) 1267, 1677
TaaI ACNGT 2 cut(s) 60, 873
TaiI ACGT 4 cut(s) 577, 642, 749, 1405
TaqI TCGA 7 cut(s) 261, 411, 489, 503, 911, 1341, 1559
TasI AATT 7 cut(s) 114, 125, 185, 316, 652, 1319, 1629
TatI WGTACW 1 cut(s) 868
TfiI GAWTC 4 cut(s) 217, 467, 1296, 1535
Tru1I TTAA 4 cut(s) 62, 338, 456, 1485
Tru9I TTAA 4 cut(s) 62, 338, 456, 1485
TseFI GTSAC 4 cut(s) 85, 473, 776, 1478
TseI GCWGC 3 cut(s) 1247, 1263, 1353
Tsp45I GTSAC 4 cut(s) 85, 473, 776, 1478
TspDTI ATGAA 7 cut(s) 300, 636, 891, 1154, 1188, 1202, 1548
VneI GTGCAC 1 cut(s) 346
VpaK11BI GGWCC 2 cut(s) 191, 254
XagI CCTNNNNNAGG 1 cut(s) 297
XapI RAATTY 5 cut(s) 114, 125, 652, 1319, 1629
XbaI TCTAGA 1 cut(s) 979
XceI RCATGY 2 cut(s) 869, 1571
XmnI GAANNNNTTC 1 cut(s) 1232
XspI CTAG 2 cut(s) 422, 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.