Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0015941

Physical Location & Seq

Genomic Coordinates Forward (+)

3239871 .. 3242558

Gene Structure 2688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1039900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2688 bp

ATGGATCTTCGTGCTTGTAGCCCAGGTTTCAATCTAAGGCCCAAATTGGAACTTCTGACCCAAACAAAATATAAATTGACGAAAATACCCTTCCCGCTTTATGTGGCATTAACGGCCAACCATATCCTGCTCCTTTCCTTCCTCTGCTCTCTCTTCTTCAAGCTTTTGGCTATGGCTTCTCTCTTCCCAAACACCACAATTCCAAACCCAAATATCTCTCTCCCCAAACACTCTCTTCCCACAGAACCCCACAAAATCTCACAAACCCAATTCACAAAAGCTCCAGAAAATGCGAAAAGCAATCAAATTCTGTACCAATCGTACTTCAGTCGCATGTCATCTCTCTGCAAGCAAGGCCAAATTCAACAGGCTGTGGACTTGGTCGCCGAAATGGAGCTCAAAAATCTCCGCATCGGGCCTGAAGTCTACGGCGAGCTCCTCCAGGGGTGCGTCTACGAGCGAGCTCTTCATACGGGTAGGCAAATTCACGCTCAGATTGTCAAGAAAGGTGCCATCTTTGCGATGAATGAGTACATTGAAACCAAGTTAGTGATTTTCTACGCGAAATGCGATAATCCGGAGGCTTCAAATAGTTTGTTTAGGAGGGTGAGGTTGAAAAATGTGTTTTCTTGGGCTGCTGTTATTGGGTTGAATTGCAGGAAGGGTTTTTATCAAGAGGCTTTGCTAGGGTTTAAGGAAATGCAGGAAAATGGGCTGCTGCCGGATAATTTTGTGCTTCCGAATGTATTGAAGGCTTGTGGTGGTTTGGAGTGGATTCGGATTGGAAAAGTGGTTCATGGGTTGGTGGTGAAGTTGGGTTGTGGTGGGTGTGTGTTTGTTGCTAGTAGTCTTGTGGATATGTATGGAAAATGTGGGGAGGTGGAGGATGCAAGAAAGGTGTTTGATGGTATGCCCCAAAGAAATGCAGTGGCTTGGAATTCGATGATTGTGGGTTATGTACAAAACGGTTTGAATGAGGAAGCTATTGAGGTGTTTTATGAGATGAGGGAGGAGGGTGTTGAGCCCACTCAAGTTACTCTATCGAGCTTTCTTTCGGCTTCCACTAATTTAGGCGCGTTACAAGACGGTAAGCAAGGTCATGCAATTGCCGTGATATGTGGAATAGAAATGACGACCAATTTGGGGAGTTCTCTTATAAACTTTTATTCCAAGGTTGGTTTGATTGAGGATGCAGAATCGGTTTTTAGTAGGATGCTTGAGAAAGATGTGGTCACATGGAATTTGCTCATATCTGGATATGTGCAAATTGGAGAGGTTGACAAAGCACTGAATATGTGCCATCTAATGAGACTCGAAAACTTGAGGTTTGACTCTGTGACTCTTGCAACCTTAATGTCTGCTTTTGCAGATATGCGTAATTTAAAGTTGGGTAAGGAGGGACATTGCTATTGTATAAGGAACAACCTTGAATCTGACGTGGTTGTTGTGAGTAGCATTGTAGACATGTATGCCAAATGTGAGAAAATTGGTTGTGCAAGACGAGTTTTCAATTCTTCGATAACAAAAGATCTTATTCTGTGGAACACAATGCTGGCTGCTTTTGCAGAATTGGGTCACAGTGGTGAGGCCTTAAATTTGTTCTATCAGATGCAGCTAGAAAGCGTGCCGCCAAATGTGATATCATGGAACTCTCTGATTTTAGGGTTTCTGAATAGTGGCCAGGTCAATGAGGCTAAAGATATGTTTTTGCAAATGCAGTCCCTTGGAGTCCAACCTAACCTGGTTACTTGGACTTCCCTGATCTCGGGTCTGGCTAGGAATGGTTTTGGCTATGAAGCGATTCTAACATTCCAGCGGATGCAAGAAGCTGGAGTTAAACCGAACGTTGTTAGCATTATTGGTGTACTCTTGGCTTGCATAAACGTGGCATCATTACAGATTGGAAGAGCCTTACATGGATATTTGATACGGCATTCACTCTACTTGTCAATTCCAATCGCGACCTCTTTGGTAGATATGTATGCTAAATGTGGCAACAGAGATCAAGCGAAGAGGGTGTTTGATATGATTCCAGACAAGGAGTTACCTATCTACAATGCAATGATTTCCGGTTTTGCATTACACGGTCAAGCTGTGGAAGCTCTTGCACTATATCGGTGCTTAAGGGAAGAAGGTTTGAAACCCGACAACATAACCTTTACCAATGCGTTATACGCATGTAGCCATGCCATGATGGTTAGCGAAGGATTGGAGCTTTTCGTTGATATGGTGTCCAATCACAATATAAATCCGAGTATAGAGCATTATGGCTGTATGGTTAGTCTTCTTTCACGGTGTGGAGACCTGGATGAAGCTTTTAGGCTCATTAGCACGATGCCTTACAAGCCTGATGTGCAGATATTGGGATCATTACTTGCTGCTTGTAGGGAACACAATAAGATCGAACTCGAAGAATATCTATCCAATCAACTACTGAAATTACAGCCAGACAATTCCGGAAACTATGTAGCAATGTCAAATGCCTATGCAGCTGCAGGAAAATGGGATGAGGTAAAAAAGGTGAGGCAGTTAATGAAAGAAAGGGGCTTGCGAAAAATTCCCGGATGCAGCTGGATTCAAGTCGGAGAAGAACTTAATGTGTTTGTTGCTGGTGACAAGTCACACCCTGAAACTGAAGAAATCTATACGACATTGGCATTGTTGCTAATGGAAATGTCTTTTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

896

Amino Acids

99.69

Weight (kDa)

6.44

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	308 - 353	3.9e-11	PPR repeat family
PPR	PF01535	310 - 340	3e-09	PPR repeat
PPR_2	PF13041	408 - 456	2.8e-09	PPR repeat family
PPR_2	PF13041	544 - 593	1.3e-14	PPR repeat family
PPR_3	PF13812	571 - 618	8.3e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	579 - 619	7e-07	PPR repeat family
PPR	PF01535	582 - 612	1.1e-06	PPR repeat
PPR_2	PF13041	684 - 728	1.4e-06	PPR repeat family
E_motif	PF20431	798 - 860	3.5e-22	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55740
fragaria_vesca	FvH4_1g04140
malus_domestica	MD02G1039900.v1.1
prunus_persica	Prupe.7G235800_v2.0.a1
pyrus_communis	pycom02g03320
rosa_chinensis	RchiOBHm_Chr2g0089611
rosa_laevigata	RLG00000016045
rosa_multiflora	Rmu_sc0004662.1_g000003
rosa_roxburghii	Rroxscaffold_2G00151710
rosa_rugosa	Rorug02G0002100
rosa_samantha	Rh2AG047400 Rh2BG046100 Rh2CG048000 Rh2DG047500
rosa_wichuraiana	Rw2G003950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1157
AccB1I	GGYRCC	1 cut(s)	509
AccI	GTMKAC	3 cut(s)	426, 453, 1461
AccII	CGCG	3 cut(s)	563, 1076, 1961
AccIII	TCCGGA	2 cut(s)	577, 2456
AciI	CCGC	4 cut(s)	95, 409, 1628, 1816
AclI	AACGTT	1 cut(s)	1845
AclWI	GGATC	2 cut(s)	12, 2374
AcoI	YGGCCR	2 cut(s)	114, 1678
AcsI	RAATTY	7 cut(s)	306, 360, 483, 937, 1240, 1594, 2556
AcuI	CTGAAG	3 cut(s)	310, 441, 2655
AdeI	CACNNNGTG	1 cut(s)	2297
AfaI	GTAC	5 cut(s)	314, 323, 533, 960, 1866
AfiI	CCNNNNNNNGG	2 cut(s)	1143, 1765
AflII	CTTAAG	1 cut(s)	2122
AflIII	ACRYGT	1 cut(s)	1464
AjiI	CACGTC	1 cut(s)	1438
AjnI	CCWGG	5 cut(s)	22, 441, 1680, 1740, 2304
AleI	CACNNNNGTG	1 cut(s)	1581
AloI	GAACNNNNNNTCC	2 cut(s)	777, 809
Alw21I	GWGCWC	3 cut(s)	399, 438, 466
Alw26I	GTCTC	2 cut(s)	1303, 2295
AlwI	GGATC	2 cut(s)	12, 2374
Ama87I	CYCGRG	1 cut(s)	1765
Aor13HI	TCCGGA	2 cut(s)	577, 2456
AoxI	GGCC	6 cut(s)	38, 114, 355, 416, 1587, 1678
ApeKI	GCWGC	9 cut(s)	635, 715, 718, 1556, 1612, 2378, 2489, 2492, 2568
ApoI	RAATTY	7 cut(s)	306, 360, 483, 937, 1240, 1594, 2556
ArsI	GACNNNNNNTTYG	2 cut(s)	1123, 1155
Asp700I	GAANNNNTTC	1 cut(s)	1800
AspLEI	GCGC	1 cut(s)	1076
AspS9I	GGNCC	2 cut(s)	39, 416
AsuC2I	CCSGG	1 cut(s)	2562
AsuHPI	GGTGA	5 cut(s)	619, 820, 1595, 2533, 2624
AvaI	CYCGRG	1 cut(s)	1765
BalI	TGGCCA	1 cut(s)	1680
BanI	GGYRCC	1 cut(s)	509
BanII	GRGCYC	4 cut(s)	399, 438, 466, 1026
BbsI	GAAGAC	1 cut(s)	2276
Bbv12I	GWGCWC	3 cut(s)	399, 438, 466
BbvI	GCAGC	9 cut(s)	622, 702, 705, 1543, 1624, 2365, 2479, 2501, 2580
BccI	CCATC	4 cut(s)	521, 899, 1308, 2188
BceAI	ACGGC	4 cut(s)	129, 445, 1094, 1946
BciT130I	CCWGG	5 cut(s)	24, 443, 1682, 1742, 2306
BcnI	CCSGG	1 cut(s)	2562
BcoDI	GTCTC	2 cut(s)	1303, 2295
BfaI	CTAG	4 cut(s)	686, 843, 1616, 1776
BfmI	CTRYAG	1 cut(s)	2493
BfrI	CTTAAG	1 cut(s)	2122
BglII	AGATCT	1 cut(s)	1528
Bme1390I	CCNGG	6 cut(s)	24, 443, 1682, 1742, 2306, 2562
BmeT110I	CYCGRG	1 cut(s)	1765
BmgBI	CACGTC	1 cut(s)	1438
BmgT120I	GGNCC	2 cut(s)	39, 416
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	6 cut(s)	24, 443, 1682, 1742, 2306, 2562
BmsI	GCATC	9 cut(s)	420, 877, 1180, 1203, 1599, 1809, 1898, 2325, 2555
BpiI	GAAGAC	1 cut(s)	2276
BpmI	CTGGAG	3 cut(s)	267, 425, 1851
BpuEI	CTTGAG	3 cut(s)	1014, 1238, 1342
BpuMI	CCSGG	1 cut(s)	2562
BsaI	GGTCTC	1 cut(s)	2295
BsaJI	CCNNGG	4 cut(s)	22, 442, 1170, 1723
BsaWI	WCCGGW	3 cut(s)	577, 2069, 2456
BsaXI	ACNNNNNCTCC	2 cut(s)	265, 295
Bsc4I	CCNNNNNNNGG	2 cut(s)	1143, 1765
Bse3DI	GCAATG	3 cut(s)	1402, 2067, 2478
BseAI	TCCGGA	2 cut(s)	577, 2456
BseBI	CCWGG	5 cut(s)	24, 443, 1682, 1742, 2306
BseDI	CCNNGG	4 cut(s)	22, 442, 1170, 1723
BseGI	GGATG	7 cut(s)	892, 1195, 1218, 1824, 2314, 2512, 2570
BseLI	CCNNNNNNNGG	2 cut(s)	1143, 1765
BseMI	GCAATG	3 cut(s)	1402, 2067, 2478
BseMII	CTCAG	1 cut(s)	506
BseRI	GAGGAG	2 cut(s)	428, 1025
BseXI	GCAGC	9 cut(s)	622, 702, 705, 1543, 1624, 2365, 2479, 2501, 2580
BsgI	GTGCAG	1 cut(s)	2375
Bsh1236I	CGCG	3 cut(s)	563, 1076, 1961
BshFI	GGCC	6 cut(s)	40, 116, 357, 418, 1589, 1680
BshNI	GGYRCC	1 cut(s)	509
BsiHKAI	GWGCWC	3 cut(s)	399, 438, 466
BsiHKCI	CYCGRG	1 cut(s)	1765
BsiSI	CCGG	5 cut(s)	578, 722, 2070, 2457, 2562
BslFI	GGGAC	2 cut(s)	1413, 1705
BslI	CCNNNNNNNGG	2 cut(s)	1143, 1765
BsmAI	GTCTC	2 cut(s)	1303, 2295
BsmFI	GGGAC	2 cut(s)	1413, 1705
BsmI	GAATGC	1 cut(s)	1933
BsnI	GGCC	6 cut(s)	40, 116, 357, 418, 1589, 1680
Bso31I	GGTCTC	1 cut(s)	2295
BsoBI	CYCGRG	1 cut(s)	1765
Bsp1286I	GDGCHC	4 cut(s)	399, 438, 466, 1026
Bsp13I	TCCGGA	2 cut(s)	577, 2456
Bsp1407I	TGTACA	1 cut(s)	958
Bsp143I	GATC	6 cut(s)	4, 1528, 1761, 2002, 2366, 2400
Bsp68I	TCGCGA	1 cut(s)	1961
BspACI	CCGC	4 cut(s)	95, 409, 1628, 1816
BspANI	GGCC	6 cut(s)	40, 116, 357, 418, 1589, 1680
BspCNI	CTCAG	1 cut(s)	505
BspEI	TCCGGA	2 cut(s)	577, 2456
BspFNI	CGCG	3 cut(s)	563, 1076, 1961
BspLI	GGNNCC	1 cut(s)	511
BspMAI	CTGCAG	1 cut(s)	2497
BspPI	GGATC	2 cut(s)	12, 2374
BspQI	GCTCTTC	2 cut(s)	471, 1900
BspT107I	GGYRCC	1 cut(s)	509
BspTI	CTTAAG	1 cut(s)	2122
BspTNI	GGTCTC	1 cut(s)	2295
BsrDI	GCAATG	3 cut(s)	1402, 2067, 2478
BsrGI	TGTACA	1 cut(s)	958
BssECI	CCNNGG	4 cut(s)	22, 442, 1170, 1723
BssMI	GATC	6 cut(s)	4, 1528, 1761, 2002, 2366, 2400
BssT1I	CCWWGG	2 cut(s)	1170, 1723
Bst2UI	CCWGG	5 cut(s)	24, 443, 1682, 1742, 2306
Bst4CI	ACNGT	5 cut(s)	968, 1088, 1580, 2087, 2295
Bst6I	CTCTTC	6 cut(s)	158, 188, 240, 471, 1900, 2006
BstAFI	CTTAAG	1 cut(s)	2122
BstAUI	TGTACA	1 cut(s)	958
BstC8I	GCNNGC	7 cut(s)	350, 434, 462, 1554, 1625, 1876, 2549
BstDEI	CTNAG	2 cut(s)	35, 492
BstF5I	GGATG	7 cut(s)	892, 1195, 1218, 1824, 2314, 2512, 2570
BstFNI	CGCG	3 cut(s)	563, 1076, 1961
BstHHI	GCGC	1 cut(s)	1076
BstKTI	GATC	6 cut(s)	7, 1531, 1764, 2005, 2369, 2403
BstMAI	GTCTC	2 cut(s)	1303, 2295
BstMBI	GATC	6 cut(s)	4, 1528, 1761, 2002, 2366, 2400
BstMWI	GCNNNNNNNGC	9 cut(s)	113, 354, 518, 1562, 2099, 2174, 2344, 2353, 2489
BstNI	CCWGG	5 cut(s)	24, 443, 1682, 1742, 2306
BstNSI	RCATGY	3 cut(s)	337, 1468, 2181
BstSCI	CCNGG	6 cut(s)	22, 441, 1680, 1740, 2304, 2560
BstSFI	CTRYAG	1 cut(s)	2493
BstUI	CGCG	3 cut(s)	563, 1076, 1961
BstV1I	GCAGC	9 cut(s)	622, 702, 705, 1543, 1624, 2365, 2479, 2501, 2580
BstV2I	GAAGAC	1 cut(s)	2276
BstX2I	RGATCY	2 cut(s)	4, 1528
BstYI	RGATCY	2 cut(s)	4, 1528
BsuRI	GGCC	6 cut(s)	40, 116, 357, 418, 1589, 1680
BtgZI	GCGATG	1 cut(s)	536
BtrI	CACGTC	1 cut(s)	1438
BtsCI	GGATG	7 cut(s)	892, 1195, 1218, 1824, 2314, 2512, 2570
BtsI	GCAGTG	1 cut(s)	933
BtsIMutI	CAGTG	3 cut(s)	933, 1286, 1585
BtuMI	TCGCGA	1 cut(s)	1961
Cac8I	GCNNGC	7 cut(s)	350, 434, 462, 1554, 1625, 1876, 2549
CfoI	GCGC	1 cut(s)	1076
Cfr13I	GGNCC	2 cut(s)	39, 416
CseI	GACGC	1 cut(s)	439
CsiI	ACCWGGT	1 cut(s)	1740
Csp6I	GTAC	5 cut(s)	313, 322, 532, 959, 1865
CviQI	GTAC	5 cut(s)	313, 322, 532, 959, 1865
DdeI	CTNAG	2 cut(s)	35, 492
DpnI	GATC	6 cut(s)	6, 1530, 1763, 2004, 2368, 2402
DpnII	GATC	6 cut(s)	4, 1528, 1761, 2002, 2366, 2400
DraI	TTTAAA	1 cut(s)	1383
DraIII	CACNNNGTG	1 cut(s)	2297
EaeI	YGGCCR	2 cut(s)	114, 1678
Eam1104I	CTCTTC	6 cut(s)	158, 188, 240, 471, 1900, 2006
EarI	CTCTTC	6 cut(s)	158, 188, 240, 471, 1900, 2006
Ecl136II	GAGCTC	3 cut(s)	397, 436, 464
Eco130I	CCWWGG	2 cut(s)	1170, 1723
Eco147I	AGGCCT	1 cut(s)	1589
Eco24I	GRGCYC	4 cut(s)	399, 438, 466, 1026
Eco31I	GGTCTC	1 cut(s)	2295
Eco32I	GATATC	1 cut(s)	1641
Eco53kI	GAGCTC	3 cut(s)	397, 436, 464
Eco57I	CTGAAG	3 cut(s)	310, 441, 2655
Eco88I	CYCGRG	1 cut(s)	1765
EcoICRI	GAGCTC	3 cut(s)	397, 436, 464
EcoRI	GAATTC	1 cut(s)	937
EcoRII	CCWGG	5 cut(s)	22, 441, 1680, 1740, 2304
EcoRV	GATATC	1 cut(s)	1641
EcoT14I	CCWWGG	2 cut(s)	1170, 1723
EcoT38I	GRGCYC	4 cut(s)	399, 438, 466, 1026
ErhI	CCWWGG	2 cut(s)	1170, 1723
FaqI	GGGAC	2 cut(s)	1413, 1705
FauI	CCCGC	1 cut(s)	102
FblI	GTMKAC	3 cut(s)	426, 453, 1461
FokI	GGATG	7 cut(s)	899, 1202, 1225, 1831, 2321, 2519, 2577
FriOI	GRGCYC	4 cut(s)	399, 438, 466, 1026
FspBI	CTAG	4 cut(s)	686, 843, 1616, 1776
GlaI	GCGC	1 cut(s)	1075
GsuI	CTGGAG	3 cut(s)	267, 425, 1851
HaeIII	GGCC	6 cut(s)	40, 116, 357, 418, 1589, 1680
HapII	CCGG	5 cut(s)	578, 722, 2070, 2457, 2562
HgaI	GACGC	1 cut(s)	439
HhaI	GCGC	1 cut(s)	1076
Hin6I	GCGC	1 cut(s)	1074
HinP1I	GCGC	1 cut(s)	1074
HincII	GTYRAC	1 cut(s)	1279
HindII	GTYRAC	1 cut(s)	1279
HindIII	AAGCTT	2 cut(s)	161, 2313
HpaII	CCGG	5 cut(s)	578, 722, 2070, 2457, 2562
HphI	GGTGA	5 cut(s)	619, 820, 1595, 2533, 2624
Hpy166II	GTNNAC	6 cut(s)	376, 427, 454, 1279, 1462, 1865
Hpy188III	TCNNGA	8 cut(s)	284, 502, 578, 674, 1254, 1960, 2033, 2457
Hpy8I	GTNNAC	6 cut(s)	376, 427, 454, 1279, 1462, 1865
HpyAV	CCTTC	6 cut(s)	100, 148, 655, 745, 2126, 2198
HpyCH4III	ACNGT	5 cut(s)	968, 1088, 1580, 2087, 2295
HpyCH4IV	ACGT	3 cut(s)	1437, 1845, 1884
HpyF10VI	GCNNNNNNNGC	9 cut(s)	113, 354, 518, 1562, 2099, 2174, 2344, 2353, 2489
HpyF3I	CTNAG	2 cut(s)	35, 492
HpySE526I	ACGT	3 cut(s)	1437, 1845, 1884
HspAI	GCGC	1 cut(s)	1074
Kpn2I	TCCGGA	2 cut(s)	577, 2456
Kzo9I	GATC	6 cut(s)	4, 1528, 1761, 2002, 2366, 2400
LguI	GCTCTTC	2 cut(s)	471, 1900
LmnI	GCTCC	5 cut(s)	135, 286, 394, 441, 2212
Lsp1109I	GCAGC	9 cut(s)	622, 702, 705, 1543, 1624, 2365, 2479, 2501, 2580
LweI	GCATC	9 cut(s)	420, 877, 1180, 1203, 1599, 1809, 1898, 2325, 2555
MabI	ACCWGGT	1 cut(s)	1740
MaeI	CTAG	4 cut(s)	686, 843, 1616, 1776
MaeII	ACGT	3 cut(s)	1437, 1845, 1884
MaeIII	GTNAC	9 cut(s)	1033, 1077, 1231, 1336, 1574, 1744, 2043, 2612, 2619
MalI	GATC	6 cut(s)	6, 1530, 1763, 2004, 2368, 2402
MboI	GATC	6 cut(s)	4, 1528, 1761, 2002, 2366, 2400
MfeI	CAATTG	1 cut(s)	1104
MflI	RGATCY	2 cut(s)	4, 1528
MhlI	GDGCHC	4 cut(s)	399, 438, 466, 1026
MlsI	TGGCCA	1 cut(s)	1680
MluNI	TGGCCA	1 cut(s)	1680
MlyI	GAGTC	4 cut(s)	1305, 1325, 1333, 1737
MmeI	TCCRAC	2 cut(s)	1756, 2563
Mox20I	TGGCCA	1 cut(s)	1680
MroI	TCCGGA	2 cut(s)	577, 2456
MroXI	GAANNNNTTC	1 cut(s)	1800
MscI	TGGCCA	1 cut(s)	1680
MseI	TTAA	9 cut(s)	110, 693, 1352, 1382, 1592, 1836, 2123, 2531, 2595
MslI	CAYNNNNRTG	2 cut(s)	1581, 1883
Msp20I	TGGCCA	1 cut(s)	1680
MspA1I	CMGCKG	3 cut(s)	1816, 2492, 2571
MspCI	CTTAAG	1 cut(s)	2122
MspI	CCGG	5 cut(s)	578, 722, 2070, 2457, 2562
MspR9I	CCNGG	6 cut(s)	24, 443, 1682, 1742, 2306, 2562
MunI	CAATTG	1 cut(s)	1104
Mva1269I	GAATGC	1 cut(s)	1933
MvaI	CCWGG	5 cut(s)	24, 443, 1682, 1742, 2306
MvnI	CGCG	3 cut(s)	563, 1076, 1961
MwoI	GCNNNNNNNGC	9 cut(s)	113, 354, 518, 1562, 2099, 2174, 2344, 2353, 2489
NciI	CCSGG	1 cut(s)	2562
NdeII	GATC	6 cut(s)	4, 1528, 1761, 2002, 2366, 2400
NlaIV	GGNNCC	1 cut(s)	511
NmuCI	GTSAC	5 cut(s)	1231, 1336, 1574, 2612, 2619
NruI	TCGCGA	1 cut(s)	1961
NspI	RCATGY	3 cut(s)	337, 1468, 2181
OliI	CACNNNNGTG	1 cut(s)	1581
PceI	AGGCCT	1 cut(s)	1589
PciI	ACATGT	1 cut(s)	1464
PciSI	GCTCTTC	2 cut(s)	471, 1900
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PctI	GAATGC	1 cut(s)	1933
PdmI	GAANNNNTTC	1 cut(s)	1800
PfeI	GAWTC	6 cut(s)	775, 1196, 1430, 1801, 2029, 2575
PflFI	GACNNNGTC	1 cut(s)	380
PfoI	TCCNGGA	1 cut(s)	2560
PleI	GAGTC	4 cut(s)	1305, 1325, 1333, 1736
PpsI	GAGTC	4 cut(s)	1305, 1325, 1333, 1736
PscI	ACATGT	1 cut(s)	1464
PsiI	TTATAA	1 cut(s)	1157
Psp124BI	GAGCTC	3 cut(s)	399, 438, 466
Psp1406I	AACGTT	1 cut(s)	1845
Psp6I	CCWGG	5 cut(s)	22, 441, 1680, 1740, 2304
PspGI	CCWGG	5 cut(s)	22, 441, 1680, 1740, 2304
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	2 cut(s)	39, 416
PstI	CTGCAG	1 cut(s)	2497
PsuI	RGATCY	2 cut(s)	4, 1528
PsyI	GACNNNGTC	1 cut(s)	380
PvuII	CAGCTG	2 cut(s)	2492, 2571
RruI	TCGCGA	1 cut(s)	1961
RsaI	GTAC	5 cut(s)	314, 323, 533, 960, 1866
RsaNI	GTAC	5 cut(s)	313, 322, 532, 959, 1865
RseI	CAYNNNNRTG	2 cut(s)	1581, 1883
SacI	GAGCTC	3 cut(s)	399, 438, 466
SapI	GCTCTTC	2 cut(s)	471, 1900
SaqAI	TTAA	9 cut(s)	110, 693, 1352, 1382, 1592, 1836, 2123, 2531, 2595
Sau3AI	GATC	6 cut(s)	4, 1528, 1761, 2002, 2366, 2400
Sau96I	GGNCC	2 cut(s)	39, 416
SchI	GAGTC	4 cut(s)	1305, 1325, 1333, 1737
ScrFI	CCNGG	6 cut(s)	24, 443, 1682, 1742, 2306, 2562
SduI	GDGCHC	4 cut(s)	399, 438, 466, 1026
SexAI	ACCWGGT	1 cut(s)	1740
SfaNI	GCATC	9 cut(s)	420, 877, 1180, 1203, 1599, 1809, 1898, 2325, 2555
SfcI	CTRYAG	1 cut(s)	2493
SmiMI	CAYNNNNRTG	2 cut(s)	1581, 1883
SmlI	CTYRAG	4 cut(s)	1029, 1217, 1321, 2122
SmoI	CTYRAG	4 cut(s)	1029, 1217, 1321, 2122
SseBI	AGGCCT	1 cut(s)	1589
SsiI	CCGC	4 cut(s)	95, 409, 1628, 1816
SspMI	CTAG	4 cut(s)	686, 843, 1616, 1776
SstI	GAGCTC	3 cut(s)	399, 438, 466
StuI	AGGCCT	1 cut(s)	1589
StyD4I	CCNGG	6 cut(s)	22, 441, 1680, 1740, 2304, 2560
StyI	CCWWGG	2 cut(s)	1170, 1723
TaaI	ACNGT	5 cut(s)	968, 1088, 1580, 2087, 2295
TaiI	ACGT	3 cut(s)	1440, 1848, 1887
TaqI	TCGA	6 cut(s)	941, 1043, 1314, 1517, 2403, 2409
TatI	WGTACW	3 cut(s)	531, 958, 1864
TauI	GCSGC	1 cut(s)	1630
TfiI	GAWTC	6 cut(s)	775, 1196, 1430, 1801, 2029, 2575
Tru1I	TTAA	9 cut(s)	110, 693, 1352, 1382, 1592, 1836, 2123, 2531, 2595
Tru9I	TTAA	9 cut(s)	110, 693, 1352, 1382, 1592, 1836, 2123, 2531, 2595
TscAI	CASTG	3 cut(s)	933, 1293, 1585
TseFI	GTSAC	5 cut(s)	1231, 1336, 1574, 2612, 2619
TseI	GCWGC	9 cut(s)	635, 715, 718, 1556, 1612, 2378, 2489, 2492, 2568
Tsp45I	GTSAC	5 cut(s)	1231, 1336, 1574, 2612, 2619
TspDTI	ATGAA	6 cut(s)	458, 539, 785, 1809, 2325, 2549
TspRI	CASTG	3 cut(s)	933, 1293, 1585
Tth111I	GACNNNGTC	1 cut(s)	380
Vha464I	CTTAAG	1 cut(s)	2122
XapI	RAATTY	7 cut(s)	306, 360, 483, 937, 1240, 1594, 2556
XceI	RCATGY	3 cut(s)	337, 1468, 2181
XmiI	GTMKAC	3 cut(s)	426, 453, 1461
XmnI	GAANNNNTTC	1 cut(s)	1800
XspI	CTAG	4 cut(s)	686, 843, 1616, 1776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.