Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0015941

Physical Location & Seq

Genomic Coordinates Forward (+)

3424919 .. 3427455

Gene Structure 2537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016045

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2136 bp

ATGGCTTCTTTACCTTACAGCACCATTCCAAACACACACCTCTCTTCATCCAAACACTCCATACCCATAGAAAACCAAAAACCATCACAAGCCCATTTCCCAAAGCTTCAAGAAAATGCAACCCAGAATCAAACTCTGTCCAAATCTTACTTCAATCAGATGTCAACTCTCGCCAAACAGAGCCAAATTCAAGAAGCCGTAGACTTGCTCATCCATATGGACCTCAAGAGCCTCCACATTGGGCCCGAAACCTATGGCGAGCTGCTTCAGGCGTGTGTCTACGAGCGAGCTCTTCAAACCGGAAAGCAAATCCACGCCCGGATTATCAAGAAAGGTGAGATGTTTTCAAGAAATGAGTACATTGAAACTAAACTAGTGATCTTTTACGCAAAATGCGATGATGGGAAAGCTTCGAATCGTTTGTTTAAAAGGGTGAGATTGAAAAATGTGTTTTCTTGGGCTGCAGTTATTGGATTGAATTGTAGATTGGGTTTTTACAAAGAGGCTTTGCTAGGGTTTATGGAAATGCATGAAGATGGGTTGTTACCGGATAATTTTGTGGTTCCGAATGTGTTGAAGGCTTGCGGGGCGATAGAGTGGATTGGAGTTGGGAAAGCAGTTCATGGATATGTGGTCAAGATGGGTTGTAATGGGTGTGTGTTTGTTGCTAGTAGTCTTGTAGATATGTATGGAAAATGTGGGGTTGTGGATGATGCGAGGAAAGTGTTTGATGAAATGGTTGAGAGAAATGTGATCACATGGAATTCGATGCTTGTGAGTTATGTGCAAAATGGATTGAATGAGGATGCTATCAAGGTGTTTTGTGATATGAGGGAGGAAGGTGTTGAACCTACTCATGTGACTGTGTCTAGCTTTCTTTCGGCTTCGGCTAATTTAGGTGCGCTAGAAGAAGGTAAGCAAGGGCATGCATTAGCAGTTGTGAGTGGACTTGAACTGAATACCATTTTGGGGAGTTCTATTATAAACTTTTATTCCAAGGTTGGTTTGATTGAGGATGCTGAAATAGTTTTTAGTAGGATGAATGAGAAAGATGTGGTTACATGGAATTTGCTCATATCTGGGTATTTGCAAATTGGGGATGTTGATAAAGGTCTTGATATGTGCCGCTTAATGAGACTAGAAAACTTGAGGTTTGACTCGGTGACTCTTGCAACCCTTATGTCTGCTTTTGCAGATACACAAAATTTGAAATTTGGCAAGGAGGCGCACTGTTATTGTATAAGGAACAACCTTGAGGGTGATGTGGTTGTTGCAAGTAGTATAGTAGACCTGTATGCCAAAAGTGAGAAAATTGATTACGCAAGACGAGCTTTCGAATCTGCAACAACTGGAGATCTTGTACTGTGGAACACACTGTTGGCGGCTTATGCAGGATTGGGACATAGTGGTGAGGCATTGAAATTGTTCTATCAGATGCAACTGGAAAGTGTGCCTCCAAATGTGATGACTTGGAACTCTCTAATATTTAGTTTTTTGAAAAATGGTCAGGTCAATGAGGCTCAAGATATGTTCTTGCAGATGCAGTCCCTTGGTGTCGAGCCAAACCTGGTCACTTGGACTACTATGATCTCGGGTCTGGCGGAGAATGGGTTTGGCCATGAAGCAATTCAGGCCTTCCATCGGATGCAAGAAGCGGGAATCAAACCCAATGTTGTGAGTATCATTTGTGTACTTAAGGCTTGCATAGAAATGGCATCATTACAGAATGGAAGAGTTATACATGGGTATTTGATTAGGCATTCCCTCTACCTTTCAATCCCAATTGCAACATCTTTAGTGGATATGTATGCTAAATGTGGTAATGTAGAAGAAGCGAAGAGAGTGTTTGATATGGTGTCAGACAAGGAGTTACCTATCTATAATGCAATGATCTCCAGTTACGCATTACATGGTCAAGCTGTGGAAGCTCTTGCGCTATACCGGCGTTTAAAGGAAGAAGGCTTACAACCCGACAGTGTAACCTTTACTAATGCCTTATATGCATGTAGCCATGCCAGTCTGGTGACTGAAGGTTTGGAGCTTTTGGATGACTTGTTATCCAATCAAACTATAAATCCAAGTATTGAGCACTATGATATGGGTTTGACTGGATGCTCTCCTTCATTATACTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

712

Amino Acids

78.82

Weight (kDa)

5.56

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	246 - 295	4.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	249 - 296	9e-12	PPR repeat family
PPR	PF01535	252 - 282	1.7e-07	PPR repeat
PPR_2	PF13041	350 - 398	2.7e-08	PPR repeat family
PPR_2	PF13041	452 - 495	1.5e-08	PPR repeat family
PPR_1	PF12854	484 - 514	2.4e-06	PPR repeat
PPR_2	PF13041	486 - 534	2.4e-15	PPR repeat family
PPR	PF01535	490 - 519	1.8e-06	PPR repeat
PPR_3	PF13812	513 - 568	6.5e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	518 - 549	1.1e-06	PPR repeat
PPR_2	PF13041	521 - 568	3e-10	PPR repeat family
PPR	PF01535	524 - 554	2.4e-07	PPR repeat
PPR_2	PF13041	626 - 670	4.3e-08	PPR repeat family
PPR	PF01535	626 - 655	7.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0015941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55740
fragaria_vesca	FvH4_1g04140
malus_domestica	MD02G1039900.v1.1
prunus_persica	Prupe.7G235800_v2.0.a1
pyrus_communis	pycom02g03320
rosa_chinensis	RchiOBHm_Chr2g0089611
rosa_laevigata	RLG00000016045
rosa_multiflora	Rmu_sc0004662.1_g000003
rosa_roxburghii	Rroxscaffold_2G00151710
rosa_rugosa	Rorug02G0002100
rosa_samantha	Rh2AG047400 Rh2BG046100 Rh2CG048000 Rh2DG047500
rosa_wichuraiana	Rw2G003950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	983
AccI	GTMKAC	3 cut(s)	201, 279, 1287
AciI	CCGC	5 cut(s)	585, 1126, 1382, 1601, 1655
AcoI	YGGCCR	1 cut(s)	1615
AcsI	RAATTY	5 cut(s)	186, 763, 1066, 1204, 1211
AcuI	CTGAAG	2 cut(s)	251, 2049
AfaI	GTAC	3 cut(s)	359, 1362, 1692
AfiI	CCNNNNNNNGG	2 cut(s)	969, 1641
AflII	CTTAAG	1 cut(s)	1694
AhlI	ACTAGT	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	1566
AjuI	GAANNNNNNNTTGG	8 cut(s)	134, 166, 470, 502, 950, 982, 1361, 1393
AluBI	AGCT	9 cut(s)	106, 262, 290, 410, 873, 1331, 1919, 1928, 2041
AluI	AGCT	9 cut(s)	106, 262, 290, 410, 873, 1331, 1919, 1928, 2041
Alw21I	GWGCWC	2 cut(s)	292, 2091
Alw26I	GTCTC	1 cut(s)	1129
Ama87I	CYCGRG	1 cut(s)	1591
AoxI	GGCC	3 cut(s)	242, 1615, 1632
ApaI	GGGCCC	1 cut(s)	246
ApeKI	GCWGC	2 cut(s)	262, 461
ApoI	RAATTY	5 cut(s)	186, 763, 1066, 1204, 1211
ArsI	GACNNNNNNTTYG	2 cut(s)	2017, 2049
Asp700I	GAANNNNTTC	2 cut(s)	1424, 1626
AspLEI	GCGC	3 cut(s)	904, 1228, 1936
AspS9I	GGNCC	3 cut(s)	220, 242, 243
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	6 cut(s)	347, 445, 1174, 1271, 1421, 2035
AsuII	TTCGAA	2 cut(s)	413, 1335
AvaI	CYCGRG	1 cut(s)	1591
AvaII	GGWCC	1 cut(s)	220
BaeGI	GKGCMC	1 cut(s)	246
BalI	TGGCCA	1 cut(s)	1617
BanII	GRGCYC	2 cut(s)	246, 292
BarI	GAAGNNNNNNTAC	2 cut(s)	1947, 1979
Bbv12I	GWGCWC	2 cut(s)	292, 2091
BbvI	GCAGC	2 cut(s)	249, 448
BccI	CCATC	5 cut(s)	91, 395, 530, 634, 1647
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	1568
BclI	TGATCA	1 cut(s)	753
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	1129
BcuI	ACTAGT	1 cut(s)	373
BfaI	CTAG	6 cut(s)	374, 512, 669, 870, 905, 1139
BfmI	CTRYAG	1 cut(s)	462
BfrI	CTTAAG	1 cut(s)	1694
BglII	AGATCT	1 cut(s)	1354
BisI	GCNGC	4 cut(s)	263, 462, 1126, 1383
BlsI	GCNGC	4 cut(s)	264, 463, 1127, 1384
Bme1390I	CCNGG	2 cut(s)	319, 1568
Bme18I	GGWCC	1 cut(s)	220
BmeT110I	CYCGRG	1 cut(s)	1591
BmgT120I	GGNCC	3 cut(s)	220, 242, 243
BmiI	GGNNCC	2 cut(s)	244, 564
BmrFI	CCNGG	2 cut(s)	319, 1568
BmsI	GCATC	9 cut(s)	703, 759, 796, 1006, 1425, 1530, 1635, 1724, 2102
BpmI	CTGGAG	2 cut(s)	1371, 1879
Bpu14I	TTCGAA	2 cut(s)	413, 1335
BpuEI	CTTGAG	4 cut(s)	209, 1168, 1274, 1506
BpuMI	CCSGG	1 cut(s)	319
BsaJI	CCNNGG	2 cut(s)	996, 1549
BsaWI	WCCGGW	2 cut(s)	299, 547
BsaXI	ACNNNNNCTCC	4 cut(s)	1344, 1374, 1595, 1625
Bsc4I	CCNNNNNNNGG	2 cut(s)	969, 1641
Bse118I	RCCGGY	1 cut(s)	1941
Bse1I	ACTGG	5 cut(s)	1354, 1446, 1896, 2016, 2113
Bse3DI	GCAATG	1 cut(s)	1893
BseBI	CCWGG	1 cut(s)	1568
BseDI	CCNNGG	2 cut(s)	996, 1549
BseLI	CCNNNNNNNGG	2 cut(s)	969, 1641
BseMI	GCAATG	1 cut(s)	1893
BseNI	ACTGG	5 cut(s)	1354, 1446, 1896, 2016, 2113
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	249, 448
BshFI	GGCC	3 cut(s)	244, 1617, 1634
BsiHKAI	GWGCWC	2 cut(s)	292, 2091
BsiHKCI	CYCGRG	1 cut(s)	1591
BsiSI	CCGG	4 cut(s)	300, 319, 548, 1942
BslFI	GGGAC	2 cut(s)	1413, 1531
BslI	CCNNNNNNNGG	2 cut(s)	969, 1641
BsmAI	GTCTC	1 cut(s)	1129
BsmFI	GGGAC	2 cut(s)	1413, 1531
BsmI	GAATGC	1 cut(s)	1759
BsnI	GGCC	3 cut(s)	244, 1617, 1634
BsoBI	CYCGRG	1 cut(s)	1591
Bsp119I	TTCGAA	2 cut(s)	413, 1335
Bsp120I	GGGCCC	1 cut(s)	242
Bsp1286I	GDGCHC	3 cut(s)	246, 292, 2091
Bsp143I	GATC	5 cut(s)	378, 753, 1354, 1587, 1890
BspACI	CCGC	5 cut(s)	585, 1126, 1382, 1601, 1655
BspANI	GGCC	3 cut(s)	244, 1617, 1634
BspLI	GGNNCC	2 cut(s)	244, 564
BspMAI	CTGCAG	1 cut(s)	466
BspQI	GCTCTTC	1 cut(s)	297
BspT104I	TTCGAA	2 cut(s)	413, 1335
BspTI	CTTAAG	1 cut(s)	1694
BsrDI	GCAATG	1 cut(s)	1893
BsrFI	RCCGGY	1 cut(s)	1941
BsrI	ACTGG	5 cut(s)	1354, 1446, 1896, 2016, 2113
BssAI	RCCGGY	1 cut(s)	1941
BssECI	CCNNGG	2 cut(s)	996, 1549
BssMI	GATC	5 cut(s)	378, 753, 1354, 1587, 1890
BssT1I	CCWWGG	2 cut(s)	996, 1549
Bst2UI	CCWGG	1 cut(s)	1568
Bst4CI	ACNGT	5 cut(s)	865, 1232, 1365, 1377, 1976
Bst6I	CTCTTC	4 cut(s)	49, 297, 1726, 1832
BstAFI	CTTAAG	1 cut(s)	1694
BstBI	TTCGAA	2 cut(s)	413, 1335
BstC8I	GCNNGC	5 cut(s)	260, 288, 583, 927, 1702
BstHHI	GCGC	3 cut(s)	904, 1228, 1936
BstKTI	GATC	5 cut(s)	381, 756, 1357, 1590, 1893
BstMAI	GTCTC	1 cut(s)	1129
BstMBI	GATC	5 cut(s)	378, 753, 1354, 1587, 1890
BstMWI	GCNNNNNNNGC	7 cut(s)	587, 1328, 1388, 1631, 1925, 1942, 2000
BstNI	CCWGG	1 cut(s)	1568
BstNSI	RCATGY	2 cut(s)	929, 2007
BstSCI	CCNGG	2 cut(s)	317, 1566
BstSFI	CTRYAG	1 cut(s)	462
BstSLI	GKGCMC	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	249, 448
BstX2I	RGATCY	1 cut(s)	1354
BstYI	RGATCY	1 cut(s)	1354
BsuRI	GGCC	3 cut(s)	244, 1617, 1634
BtgZI	GCGATG	1 cut(s)	411
BtsIMutI	CAGTG	3 cut(s)	1228, 1373, 1981
Cac8I	GCNNGC	5 cut(s)	260, 288, 583, 927, 1702
CfoI	GCGC	3 cut(s)	904, 1228, 1936
Cfr10I	RCCGGY	1 cut(s)	1941
Cfr13I	GGNCC	3 cut(s)	220, 242, 243
CsiI	ACCWGGT	1 cut(s)	1566
Csp6I	GTAC	3 cut(s)	358, 1361, 1691
CviQI	GTAC	3 cut(s)	358, 1361, 1691
DpnI	GATC	5 cut(s)	380, 755, 1356, 1589, 1892
DpnII	GATC	5 cut(s)	378, 753, 1354, 1587, 1890
DraI	TTTAAA	2 cut(s)	427, 1950
EaeI	YGGCCR	1 cut(s)	1615
Eam1104I	CTCTTC	4 cut(s)	49, 297, 1726, 1832
EarI	CTCTTC	4 cut(s)	49, 297, 1726, 1832
EciI	GGCGGA	1 cut(s)	1616
Ecl136II	GAGCTC	1 cut(s)	290
Eco130I	CCWWGG	2 cut(s)	996, 1549
Eco147I	AGGCCT	1 cut(s)	1634
Eco24I	GRGCYC	2 cut(s)	246, 292
Eco47I	GGWCC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	290
Eco57I	CTGAAG	2 cut(s)	251, 2049
Eco88I	CYCGRG	1 cut(s)	1591
EcoICRI	GAGCTC	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	763
EcoRII	CCWGG	1 cut(s)	1566
EcoT14I	CCWWGG	2 cut(s)	996, 1549
EcoT22I	ATGCAT	3 cut(s)	531, 931, 2005
EcoT38I	GRGCYC	2 cut(s)	246, 292
ErhI	CCWWGG	2 cut(s)	996, 1549
FalI	AAGNNNNNCTT	2 cut(s)	1315, 1347
FaqI	GGGAC	2 cut(s)	1413, 1531
FauI	CCCGC	2 cut(s)	578, 1648
FauNDI	CATATG	1 cut(s)	216
FbaI	TGATCA	1 cut(s)	753
FblI	GTMKAC	3 cut(s)	201, 279, 1287
Fnu4HI	GCNGC	4 cut(s)	263, 462, 1126, 1383
FriOI	GRGCYC	2 cut(s)	246, 292
Fsp4HI	GCNGC	4 cut(s)	263, 462, 1126, 1383
FspBI	CTAG	6 cut(s)	374, 512, 669, 870, 905, 1139
GlaI	GCGC	3 cut(s)	903, 1227, 1935
GluI	GCNGC	4 cut(s)	263, 462, 1126, 1383
GsuI	CTGGAG	2 cut(s)	1371, 1879
HaeIII	GGCC	3 cut(s)	244, 1617, 1634
HapII	CCGG	4 cut(s)	300, 319, 548, 1942
HhaI	GCGC	3 cut(s)	904, 1228, 1936
Hin6I	GCGC	3 cut(s)	902, 1226, 1934
HinP1I	GCGC	3 cut(s)	902, 1226, 1934
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HindIII	AAGCTT	2 cut(s)	104, 408
HinfI	GANTC	6 cut(s)	127, 415, 1157, 1165, 1337, 1659
HpaII	CCGG	4 cut(s)	300, 319, 548, 1942
HphI	GGTGA	6 cut(s)	347, 445, 1174, 1271, 1421, 2035
Hpy166II	GTNNAC	6 cut(s)	165, 202, 280, 947, 1288, 1691
Hpy188I	TCNGA	5 cut(s)	159, 567, 1434, 1644, 1861
Hpy188III	TCNNGA	8 cut(s)	110, 191, 226, 328, 348, 637, 1115, 1523
Hpy8I	GTNNAC	6 cut(s)	165, 202, 280, 947, 1288, 1691
HpyAV	CCTTC	7 cut(s)	571, 833, 905, 1645, 1952, 2024, 2130
HpyCH4III	ACNGT	5 cut(s)	865, 1232, 1365, 1377, 1976
HpyF10VI	GCNNNNNNNGC	7 cut(s)	587, 1328, 1388, 1631, 1925, 1942, 2000
HspAI	GCGC	3 cut(s)	902, 1226, 1934
Ksp22I	TGATCA	1 cut(s)	753
Kzo9I	GATC	5 cut(s)	378, 753, 1354, 1587, 1890
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	2038
Lsp1109I	GCAGC	2 cut(s)	249, 448
LweI	GCATC	9 cut(s)	703, 759, 796, 1006, 1425, 1530, 1635, 1724, 2102
MabI	ACCWGGT	1 cut(s)	1566
MaeI	CTAG	6 cut(s)	374, 512, 669, 870, 905, 1139
MaeIII	GTNAC	9 cut(s)	543, 859, 1057, 1162, 1570, 1869, 1898, 1978, 2023
MalI	GATC	5 cut(s)	380, 755, 1356, 1589, 1892
MboI	GATC	5 cut(s)	378, 753, 1354, 1587, 1890
MboII	GAAGA	8 cut(s)	36, 284, 545, 920, 1743, 1841, 1849, 1967
MfeI	CAATTG	1 cut(s)	1782
MflI	RGATCY	1 cut(s)	1354
MhlI	GDGCHC	3 cut(s)	246, 292, 2091
MlsI	TGGCCA	1 cut(s)	1617
MluNI	TGGCCA	1 cut(s)	1617
MlyI	GAGTC	2 cut(s)	1151, 1159
Mox20I	TGGCCA	1 cut(s)	1617
Mph1103I	ATGCAT	3 cut(s)	531, 931, 2005
MroXI	GAANNNNTTC	2 cut(s)	1424, 1626
MscI	TGGCCA	1 cut(s)	1617
MseI	TTAA	4 cut(s)	426, 1130, 1695, 1949
MslI	CAYNNNNRTG	5 cut(s)	215, 534, 627, 1407, 1709
Msp20I	TGGCCA	1 cut(s)	1617
MspCI	CTTAAG	1 cut(s)	1694
MspI	CCGG	4 cut(s)	300, 319, 548, 1942
MspR9I	CCNGG	2 cut(s)	319, 1568
MunI	CAATTG	1 cut(s)	1782
Mva1269I	GAATGC	1 cut(s)	1759
MvaI	CCWGG	1 cut(s)	1568
MwoI	GCNNNNNNNGC	7 cut(s)	587, 1328, 1388, 1631, 1925, 1942, 2000
NciI	CCSGG	1 cut(s)	319
NdeI	CATATG	1 cut(s)	216
NdeII	GATC	5 cut(s)	378, 753, 1354, 1587, 1890
NlaIV	GGNNCC	2 cut(s)	244, 564
NmuCI	GTSAC	4 cut(s)	859, 1162, 1570, 2023
NsiI	ATGCAT	3 cut(s)	531, 931, 2005
NspI	RCATGY	2 cut(s)	929, 2007
NspV	TTCGAA	2 cut(s)	413, 1335
PaeI	GCATGC	1 cut(s)	929
PceI	AGGCCT	1 cut(s)	1634
PciSI	GCTCTTC	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PctI	GAATGC	1 cut(s)	1759
PdmI	GAANNNNTTC	2 cut(s)	1424, 1626
PfeI	GAWTC	4 cut(s)	127, 415, 1337, 1659
PflFI	GACNNNGTC	1 cut(s)	865
PkrI	GCNGC	4 cut(s)	264, 463, 1127, 1384
PleI	GAGTC	2 cut(s)	1151, 1159
PpsI	GAGTC	2 cut(s)	1151, 1159
PsiI	TTATAA	1 cut(s)	983
Psp124BI	GAGCTC	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	1566
PspGI	CCWGG	1 cut(s)	1566
PspN4I	GGNNCC	2 cut(s)	244, 564
PspOMI	GGGCCC	1 cut(s)	242
PspPI	GGNCC	3 cut(s)	220, 242, 243
PstI	CTGCAG	1 cut(s)	466
PsuI	RGATCY	1 cut(s)	1354
PsyI	GACNNNGTC	1 cut(s)	865
RsaI	GTAC	3 cut(s)	359, 1362, 1692
RsaNI	GTAC	3 cut(s)	358, 1361, 1691
RseI	CAYNNNNRTG	5 cut(s)	215, 534, 627, 1407, 1709
SacI	GAGCTC	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	4 cut(s)	426, 1130, 1695, 1949
SatI	GCNGC	4 cut(s)	263, 462, 1126, 1383
Sau3AI	GATC	5 cut(s)	378, 753, 1354, 1587, 1890
Sau96I	GGNCC	3 cut(s)	220, 242, 243
SchI	GAGTC	2 cut(s)	1151, 1159
ScrFI	CCNGG	2 cut(s)	319, 1568
SduI	GDGCHC	3 cut(s)	246, 292, 2091
SexAI	ACCWGGT	1 cut(s)	1566
SfaNI	GCATC	9 cut(s)	703, 759, 796, 1006, 1425, 1530, 1635, 1724, 2102
SfcI	CTRYAG	1 cut(s)	462
SfuI	TTCGAA	2 cut(s)	413, 1335
SinI	GGWCC	1 cut(s)	220
SmiMI	CAYNNNNRTG	5 cut(s)	215, 534, 627, 1407, 1709
SmlI	CTYRAG	5 cut(s)	224, 1147, 1253, 1521, 1694
SmoI	CTYRAG	5 cut(s)	224, 1147, 1253, 1521, 1694
SpeI	ACTAGT	1 cut(s)	373
SphI	GCATGC	1 cut(s)	929
SseBI	AGGCCT	1 cut(s)	1634
SsiI	CCGC	5 cut(s)	585, 1126, 1382, 1601, 1655
SspI	AATATT	1 cut(s)	1485
SspMI	CTAG	6 cut(s)	374, 512, 669, 870, 905, 1139
SstI	GAGCTC	1 cut(s)	292
StuI	AGGCCT	1 cut(s)	1634
StyD4I	CCNGG	2 cut(s)	317, 1566
StyI	CCWWGG	2 cut(s)	996, 1549
TaaI	ACNGT	5 cut(s)	865, 1232, 1365, 1377, 1976
TaqI	TCGA	4 cut(s)	413, 767, 1335, 1557
TatI	WGTACW	3 cut(s)	357, 1360, 1690
TauI	GCSGC	2 cut(s)	1128, 1385
TfiI	GAWTC	4 cut(s)	127, 415, 1337, 1659
Tru1I	TTAA	4 cut(s)	426, 1130, 1695, 1949
Tru9I	TTAA	4 cut(s)	426, 1130, 1695, 1949
TscAI	CASTG	3 cut(s)	1235, 1380, 1981
TseFI	GTSAC	4 cut(s)	859, 1162, 1570, 2023
TseI	GCWGC	2 cut(s)	262, 461
Tsp45I	GTSAC	4 cut(s)	859, 1162, 1570, 2023
TspDTI	ATGAA	7 cut(s)	36, 546, 611, 747, 1055, 1635, 2112
TspRI	CASTG	3 cut(s)	1235, 1380, 1981
Tth111I	GACNNNGTC	1 cut(s)	865
Vha464I	CTTAAG	1 cut(s)	1694
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	5 cut(s)	186, 763, 1066, 1204, 1211
XceI	RCATGY	2 cut(s)	929, 2007
XmiI	GTMKAC	3 cut(s)	201, 279, 1287
XmnI	GAANNNNTTC	2 cut(s)	1424, 1626
XspI	CTAG	6 cut(s)	374, 512, 669, 870, 905, 1139
Zsp2I	ATGCAT	3 cut(s)	531, 931, 2005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.