Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0015941

Physical Location & Seq

Genomic Coordinates Forward (+)

3374456 .. 3377128

Gene Structure 2673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG047500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2490 bp

ATGGCTTCTTTACCTTACAGCACCATTCCAAACACACACCTCTCTTCATCGAAACGCTCCATACCCATAGAAAACCAAAAACCATCACAAGCCCATTTCCCAAAGCTTCAAGAAAATGCAACCCAGAATCAAACTGATCTGTCCAAATCCTACTTCAATCAGATGTCCAAACAGAGCCAAATTCAAGAAGCCGTGGACTTGCTCATCCATATGGACCTCAAGAGCCTCCACATTGGGCCCGAAATCTACGGCCAGCTGCTTCAGGCGTGTGTCTACGAGCGAGCTCTTCAAACCGGAAAGCAAATCCACGCCCGGATTATCAAGAAAGGTGAGCTGTTTTCAACAAATGAGTACATTGAAACTAAACTAGTCATCTTTTACGCAAAATGCGATGATGGGAAAGCTTCGAATCGCTTGTTTAGAAGGGTGACATTGAAAAATGTGTTTTCTTGGGCTGCAATTGTTGGATTGAATTGTAGATTGGGTTTTTACAAAGAGGCCTTGCTAGGGTTTATGGAAATGCATCAAGATGGGCTGTTTCCGGATAATTTTGTGGTTCCGAATGTGCTCAAGGCTTGCGGGGCGATGGAGTGGATTGGAGTTGGGAAAGCAGTTCATGGATATGTGGTCAAGATGGGTTGTAATGGGTGTGTGTTTGTTGCTAGTAGTCTTGTAGATATGTATGGAAAATGTGGGGTTGTGGATGAAGCGAGGAAGGTGTTTGAAGAAATGGTTGGGAGAAATGTGATCACATGGAATTCGATGCTGGTGGGTTATGTGCAAAATGGATTGAATGAGGATGCTATCGAGGTGTTTTGTGATATGAGGAAGGAAGGCGTTGAACCTACTCATGTGACTGTGTCTAGCGTTCTTTCGGCTTCGGCTAATTTAGGTGCGCTAGAAGAAGGTAAGCAAGCGCATGCATTAGCAGTTGTGAGTGGACTTGAACTGAATACCATTTTGGGGAGTTCTATTATAAACTTTTATTCCAAGGTTGGTTTGATTGAGGATGCTGAAATAGTTTTCAGTAGGATGAATGAGAAAGATGTGGTTACATGGAATTTGCTCATATCTGGGTATTTGCAAATTGGGGAGGTTGATAAAGGTCTTGATATGTGCCGCTTAATGAGACTAGAAAACTTGAGGTTTGACTCGGTGACTCTTGCATCCCTTATGTCTGCTTTTGCAGATACACGAAATTTGAAATTTGGCAAGGAGGCGCACTGTTATTGTATAAGGAACAACCTTGAGGGTGATGTGGTTGTTGCAAGTAGTATAGTAGACCTGTATGCCAAATGTGAGAAAATTGATCATGCAAGACGAGCTTTCGAATCTGCAACAACTGGAGATCTTGTACTGTGGAACACACTGTTGGCGGCTTATGCAGGATTGGGACATAGTGGTGAGGCATTGAAATTGTTCTATCAGATGCAACTCGAAAGTGTGCCTCCAAATGTGATGACTTGGAACTCTCTGATATTTGGTTTTTTGAAAAATGGTCAGGTCCATGAGGCTCAAGATATGTTCTTGCAGATGCAGTCCCTTGGTGTCGAGCCAAACCTGGTCACTTGGACTACTATGATCTCTGGTCTGGCGGAGAATGGGTTTGGCCATGAAGCAATTCAGGCCTTCCATCGGATGCAAGAAGCGGGAATCAAACCCAATTTTGTGAGTATCATTTGTGTACTTAAGGCTTGCATAGAAATGGCATCATTACAGAATGGTAGAGTTATACATGGGTATTTGATTAGGCATTCCCTCTACCTTTCAATCCCAATTGCAACATCTTTAGTGGATATGTATGCTAAATGTGGTAATGTAGACGAAGCAAAGAGAGTGTTTGATATGGTGTCAGACAAGGAGTTACCTATCTATAATGCAATGATCTCCAGTTACGCATTACATGGTCAAGCTGTGGAAGCTCTTGCACTATACCGGAGTTTAAAGGAAGAAGGCTTACAACCCGACAGTGTAACCTTTACTAATGCCTTATATGCATGCAGCCATGCCAGTCTGGTGACTGAAGGTTTGGAGCTTTTGGATGACTTGTTATCCAATCAAACTATAAATCCAAGTATTGAGCACTATGGTTGTGTGGTTAATCTTCTTTCTCGCTGTGGCAATGTGGATGAAGCTTTTAGGCTTATCGTCGCGATGCCTTATGAGCCTGATGCGCAGATATTGGGATCATTACTTGCAGCTTGTGGAGAACAGAATAACATAGAACTAGAGGAGTATTTGTCCGATCAATTACTGAAATTAGAGCCAGAGAATTCTGGAAACTACGTAGCGATTTCAAATGCATATGCAGTTGCAGGAAGATGGGATGAGGTAAAGAAAGTGAGGCAGTTAATGAAAGAAAAGGGCCTGAGAAAGATTCCTGGATGCAGCTGGATTCAAATTGGAGAAGAAATCCATGCGTTTGTTGCTGGTGACAAATCACACCCAGAAACTGAGCAAATCTATATGACATTGGAATTGTTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

829

Amino Acids

92.01

Weight (kDa)

5.41

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	247 - 294	1.1e-12	PPR repeat family
PPR_3	PF13812	247 - 293	3.5e-07	Pentatricopeptide repeat domain
PPR	PF01535	250 - 280	5.9e-08	PPR repeat
PPR_2	PF13041	348 - 396	9.8e-08	PPR repeat family
PPR_2	PF13041	450 - 493	1.8e-08	PPR repeat family
PPR_1	PF12854	482 - 512	5.6e-07	PPR repeat
PPR_2	PF13041	484 - 532	1.1e-15	PPR repeat family
PPR	PF01535	488 - 517	5.2e-07	PPR repeat
PPR_3	PF13812	511 - 566	4.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	516 - 547	1.3e-06	PPR repeat
PPR_2	PF13041	519 - 566	3.3e-09	PPR repeat family
PPR	PF01535	522 - 552	2.9e-07	PPR repeat
PPR_2	PF13041	624 - 668	4.2e-08	PPR repeat family
E_motif	PF20431	739 - 800	4.5e-23	E motif
Eplus_motif	PF20430	805 - 826	1e-06	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55740
fragaria_vesca	FvH4_1g04140
malus_domestica	MD02G1039900.v1.1
prunus_persica	Prupe.7G235800_v2.0.a1
pyrus_communis	pycom02g03320
rosa_chinensis	RchiOBHm_Chr2g0089611
rosa_laevigata	RLG00000016045
rosa_multiflora	Rmu_sc0004662.1_g000003
rosa_roxburghii	Rroxscaffold_2G00151710
rosa_rugosa	Rorug02G0002100
rosa_samantha	Rh2AG047400 Rh2BG046100 Rh2CG048000 Rh2DG047500
rosa_wichuraiana	Rw2G003950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	977
Acc16I	TGCGCA	1 cut(s)	2175
AccI	GTMKAC	3 cut(s)	273, 1281, 1821
AccII	CGCG	1 cut(s)	2153
AccIII	TCCGGA	1 cut(s)	541
AciI	CCGC	5 cut(s)	579, 1120, 1376, 1595, 1649
AclWI	GGATC	1 cut(s)	2194
AcoI	YGGCCR	2 cut(s)	250, 1609
AcsI	RAATTY	6 cut(s)	180, 757, 1060, 1198, 1205, 2272
AcuI	CTGAAG	2 cut(s)	245, 2043
AfaI	GTAC	3 cut(s)	353, 1356, 1686
AfiI	CCNNNNNNNGG	3 cut(s)	507, 963, 1635
AflII	CTTAAG	1 cut(s)	1688
AhlI	ACTAGT	1 cut(s)	367
AjnI	CCWGG	2 cut(s)	1560, 2380
Alw21I	GWGCWC	3 cut(s)	286, 570, 2085
Alw26I	GTCTC	1 cut(s)	1123
AlwI	GGATC	1 cut(s)	2194
AlwNI	CAGNNNCTG	1 cut(s)	2453
Aor13HI	TCCGGA	1 cut(s)	541
AoxI	GGCC	6 cut(s)	236, 250, 498, 1609, 1626, 2365
ApaI	GGGCCC	1 cut(s)	240
ApeKI	GCWGC	5 cut(s)	256, 455, 2001, 2198, 2388
ApoI	RAATTY	6 cut(s)	180, 757, 1060, 1198, 1205, 2272
ArsI	GACNNNNNNTTYG	2 cut(s)	2011, 2043
Asp700I	GAANNNNTTC	2 cut(s)	1418, 1620
AspLEI	GCGC	4 cut(s)	898, 919, 1222, 2176
AspS9I	GGNCC	5 cut(s)	214, 236, 237, 1504, 2365
AsuC2I	CCSGG	1 cut(s)	313
AsuHPI	GGTGA	7 cut(s)	341, 439, 1168, 1265, 1415, 2029, 2444
AsuII	TTCGAA	2 cut(s)	407, 1329
AvaII	GGWCC	2 cut(s)	214, 1504
BaeGI	GKGCMC	1 cut(s)	240
BalI	TGGCCA	1 cut(s)	1611
BanII	GRGCYC	2 cut(s)	240, 286
BarI	GAAGNNNNNNTAC	2 cut(s)	1941, 1973
Bbv12I	GWGCWC	3 cut(s)	286, 570, 2085
BbvI	GCAGC	5 cut(s)	243, 442, 2013, 2210, 2400
BccI	CCATC	7 cut(s)	91, 389, 524, 580, 628, 1641, 2316
BceAI	ACGGC	2 cut(s)	176, 265
BciT130I	CCWGG	2 cut(s)	1562, 2382
BclI	TGATCA	2 cut(s)	747, 1309
BcnI	CCSGG	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	1123
BcuI	ACTAGT	1 cut(s)	367
BfaI	CTAG	7 cut(s)	368, 506, 663, 864, 899, 1133, 2228
BfrI	CTTAAG	1 cut(s)	1688
BglII	AGATCT	1 cut(s)	1348
BisI	GCNGC	7 cut(s)	257, 456, 1120, 1377, 2002, 2199, 2389
BlsI	GCNGC	7 cut(s)	258, 457, 1121, 1378, 2003, 2200, 2390
Bme1390I	CCNGG	3 cut(s)	313, 1562, 2382
Bme18I	GGWCC	2 cut(s)	214, 1504
BmgT120I	GGNCC	5 cut(s)	214, 236, 237, 1504, 2365
BmiI	GGNNCC	2 cut(s)	238, 558
BmrFI	CCNGG	3 cut(s)	313, 1562, 2382
BpmI	CTGGAG	2 cut(s)	1365, 1873
Bpu14I	TTCGAA	2 cut(s)	407, 1329
BpuEI	CTTGAG	5 cut(s)	203, 554, 1162, 1268, 1500
BpuMI	CCSGG	1 cut(s)	313
BsaAI	YACGTR	1 cut(s)	2287
BsaJI	CCNNGG	3 cut(s)	192, 990, 1543
BsaWI	WCCGGW	3 cut(s)	293, 541, 1935
BsaXI	ACNNNNNCTCC	6 cut(s)	1338, 1368, 1589, 1619, 2225, 2255
Bsc4I	CCNNNNNNNGG	3 cut(s)	507, 963, 1635
Bse1I	ACTGG	3 cut(s)	1348, 1890, 2010
Bse3DI	GCAATG	2 cut(s)	1887, 2128
BseAI	TCCGGA	1 cut(s)	541
BseBI	CCWGG	2 cut(s)	1562, 2382
BseDI	CCNNGG	3 cut(s)	192, 990, 1543
BseLI	CCNNNNNNNGG	3 cut(s)	507, 963, 1635
BseMI	GCAATG	2 cut(s)	1887, 2128
BseMII	CTCAG	2 cut(s)	2360, 2445
BseNI	ACTGG	3 cut(s)	1348, 1890, 2010
BseRI	GAGGAG	1 cut(s)	2246
BseSI	GKGCMC	1 cut(s)	240
BseXI	GCAGC	5 cut(s)	243, 442, 2013, 2210, 2400
Bsh1236I	CGCG	1 cut(s)	2153
BshFI	GGCC	6 cut(s)	238, 252, 500, 1611, 1628, 2367
BsiHKAI	GWGCWC	3 cut(s)	286, 570, 2085
BsiSI	CCGG	4 cut(s)	294, 313, 542, 1936
BslFI	GGGAC	2 cut(s)	1407, 1525
BslI	CCNNNNNNNGG	3 cut(s)	507, 963, 1635
BsmAI	GTCTC	1 cut(s)	1123
BsmFI	GGGAC	2 cut(s)	1407, 1525
BsmI	GAATGC	1 cut(s)	1753
BsnI	GGCC	6 cut(s)	238, 252, 500, 1611, 1628, 2367
Bsp119I	TTCGAA	2 cut(s)	407, 1329
Bsp120I	GGGCCC	1 cut(s)	236
Bsp1286I	GDGCHC	4 cut(s)	240, 286, 570, 2085
Bsp13I	TCCGGA	1 cut(s)	541
Bsp143I	GATC	8 cut(s)	136, 747, 1309, 1348, 1581, 1884, 2186, 2245
Bsp68I	TCGCGA	1 cut(s)	2153
BspACI	CCGC	5 cut(s)	579, 1120, 1376, 1595, 1649
BspANI	GGCC	6 cut(s)	238, 252, 500, 1611, 1628, 2367
BspCNI	CTCAG	2 cut(s)	2361, 2446
BspEI	TCCGGA	1 cut(s)	541
BspFNI	CGCG	1 cut(s)	2153
BspLI	GGNNCC	2 cut(s)	238, 558
BspPI	GGATC	1 cut(s)	2194
BspQI	GCTCTTC	1 cut(s)	291
BspT104I	TTCGAA	2 cut(s)	407, 1329
BspTI	CTTAAG	1 cut(s)	1688
BsrDI	GCAATG	2 cut(s)	1887, 2128
BsrI	ACTGG	3 cut(s)	1348, 1890, 2010
BssECI	CCNNGG	3 cut(s)	192, 990, 1543
BssMI	GATC	8 cut(s)	136, 747, 1309, 1348, 1581, 1884, 2186, 2245
BssT1I	CCWWGG	2 cut(s)	990, 1543
Bst2UI	CCWGG	2 cut(s)	1562, 2382
Bst4CI	ACNGT	5 cut(s)	859, 1226, 1359, 1371, 1970
Bst6I	CTCTTC	2 cut(s)	49, 291
BstAFI	CTTAAG	1 cut(s)	1688
BstBAI	YACGTR	1 cut(s)	2287
BstBI	TTCGAA	2 cut(s)	407, 1329
BstC8I	GCNNGC	7 cut(s)	254, 282, 577, 915, 921, 1696, 1999
BstDEI	CTNAG	2 cut(s)	2369, 2454
BstDSI	CCRYGG	1 cut(s)	192
BstFNI	CGCG	1 cut(s)	2153
BstHHI	GCGC	4 cut(s)	898, 919, 1222, 2176
BstKTI	GATC	8 cut(s)	139, 750, 1312, 1351, 1584, 1887, 2189, 2248
BstMAI	GTCTC	1 cut(s)	1123
BstMBI	GATC	8 cut(s)	136, 747, 1309, 1348, 1581, 1884, 2186, 2245
BstMWI	GCNNNNNNNGC	9 cut(s)	581, 1322, 1382, 1625, 1919, 1994, 2164, 2173, 2426
BstNI	CCWGG	2 cut(s)	1562, 2382
BstNSI	RCATGY	2 cut(s)	923, 2001
BstSCI	CCNGG	3 cut(s)	311, 1560, 2380
BstSLI	GKGCMC	1 cut(s)	240
BstSNI	TACGTA	1 cut(s)	2287
BstUI	CGCG	1 cut(s)	2153
BstV1I	GCAGC	5 cut(s)	243, 442, 2013, 2210, 2400
BstX2I	RGATCY	1 cut(s)	1348
BstYI	RGATCY	1 cut(s)	1348
BsuRI	GGCC	6 cut(s)	238, 252, 500, 1611, 1628, 2367
BtgI	CCRYGG	1 cut(s)	192
BtgZI	GCGATG	3 cut(s)	405, 599, 2168
BtsIMutI	CAGTG	3 cut(s)	1222, 1367, 1975
BtuMI	TCGCGA	1 cut(s)	2153
Cac8I	GCNNGC	7 cut(s)	254, 282, 577, 915, 921, 1696, 1999
CaiI	CAGNNNCTG	1 cut(s)	2453
CfoI	GCGC	4 cut(s)	898, 919, 1222, 2176
Cfr13I	GGNCC	5 cut(s)	214, 236, 237, 1504, 2365
CsiI	ACCWGGT	1 cut(s)	1560
Csp6I	GTAC	3 cut(s)	352, 1355, 1685
CviQI	GTAC	3 cut(s)	352, 1355, 1685
DdeI	CTNAG	2 cut(s)	2369, 2454
DpnI	GATC	8 cut(s)	138, 749, 1311, 1350, 1583, 1886, 2188, 2247
DpnII	GATC	8 cut(s)	136, 747, 1309, 1348, 1581, 1884, 2186, 2245
DraI	TTTAAA	1 cut(s)	1944
EaeI	YGGCCR	2 cut(s)	250, 1609
Eam1104I	CTCTTC	2 cut(s)	49, 291
EarI	CTCTTC	2 cut(s)	49, 291
EciI	GGCGGA	1 cut(s)	1610
Ecl136II	GAGCTC	1 cut(s)	284
Eco105I	TACGTA	1 cut(s)	2287
Eco130I	CCWWGG	2 cut(s)	990, 1543
Eco147I	AGGCCT	2 cut(s)	500, 1628
Eco24I	GRGCYC	2 cut(s)	240, 286
Eco47I	GGWCC	2 cut(s)	214, 1504
Eco53kI	GAGCTC	1 cut(s)	284
Eco57I	CTGAAG	2 cut(s)	245, 2043
EcoICRI	GAGCTC	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	2365
EcoRI	GAATTC	2 cut(s)	757, 2272
EcoRII	CCWGG	2 cut(s)	1560, 2380
EcoT14I	CCWWGG	2 cut(s)	990, 1543
EcoT22I	ATGCAT	4 cut(s)	525, 925, 1999, 2305
EcoT38I	GRGCYC	2 cut(s)	240, 286
ErhI	CCWWGG	2 cut(s)	990, 1543
FalI	AAGNNNNNCTT	2 cut(s)	1309, 1341
FaqI	GGGAC	2 cut(s)	1407, 1525
FauI	CCCGC	2 cut(s)	572, 1642
FauNDI	CATATG	2 cut(s)	210, 2305
FbaI	TGATCA	2 cut(s)	747, 1309
FblI	GTMKAC	3 cut(s)	273, 1281, 1821
Fnu4HI	GCNGC	7 cut(s)	257, 456, 1120, 1377, 2002, 2199, 2389
FriOI	GRGCYC	2 cut(s)	240, 286
Fsp4HI	GCNGC	7 cut(s)	257, 456, 1120, 1377, 2002, 2199, 2389
FspBI	CTAG	7 cut(s)	368, 506, 663, 864, 899, 1133, 2228
FspI	TGCGCA	1 cut(s)	2175
GlaI	GCGC	4 cut(s)	897, 918, 1221, 2175
GluI	GCNGC	7 cut(s)	257, 456, 1120, 1377, 2002, 2199, 2389
GsuI	CTGGAG	2 cut(s)	1365, 1873
HaeIII	GGCC	6 cut(s)	238, 252, 500, 1611, 1628, 2367
HapII	CCGG	4 cut(s)	294, 313, 542, 1936
HhaI	GCGC	4 cut(s)	898, 919, 1222, 2176
Hin6I	GCGC	4 cut(s)	896, 917, 1220, 2174
HinP1I	GCGC	4 cut(s)	896, 917, 1220, 2174
HindIII	AAGCTT	3 cut(s)	104, 402, 2133
HinfI	GANTC	8 cut(s)	127, 409, 1151, 1159, 1331, 1653, 2377, 2395
HpaII	CCGG	4 cut(s)	294, 313, 542, 1936
HphI	GGTGA	7 cut(s)	341, 439, 1168, 1265, 1415, 2029, 2444
Hpy166II	GTNNAC	6 cut(s)	196, 274, 941, 1282, 1685, 1822
Hpy188I	TCNGA	7 cut(s)	162, 561, 1428, 1476, 1638, 1855, 2245
Hpy8I	GTNNAC	6 cut(s)	196, 274, 941, 1282, 1685, 1822
Hpy99I	CGWCG	1 cut(s)	2153
HpyAV	CCTTC	8 cut(s)	417, 709, 823, 827, 899, 1639, 1946, 2018
HpyCH4III	ACNGT	5 cut(s)	859, 1226, 1359, 1371, 1970
HpyCH4IV	ACGT	1 cut(s)	2286
HpyF10VI	GCNNNNNNNGC	9 cut(s)	581, 1322, 1382, 1625, 1919, 1994, 2164, 2173, 2426
HpyF3I	CTNAG	2 cut(s)	2369, 2454
HpySE526I	ACGT	1 cut(s)	2286
HspAI	GCGC	4 cut(s)	896, 917, 1220, 2174
Kpn2I	TCCGGA	1 cut(s)	541
Ksp22I	TGATCA	2 cut(s)	747, 1309
Kzo9I	GATC	8 cut(s)	136, 747, 1309, 1348, 1581, 1884, 2186, 2245
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	2 cut(s)	62, 2032
Lsp1109I	GCAGC	5 cut(s)	243, 442, 2013, 2210, 2400
MabI	ACCWGGT	1 cut(s)	1560
MaeI	CTAG	7 cut(s)	368, 506, 663, 864, 899, 1133, 2228
MaeII	ACGT	1 cut(s)	2286
MalI	GATC	8 cut(s)	138, 749, 1311, 1350, 1583, 1886, 2188, 2247
MboI	GATC	8 cut(s)	136, 747, 1309, 1348, 1581, 1884, 2186, 2245
MboII	GAAGA	8 cut(s)	36, 278, 737, 914, 1961, 2096, 2331, 2420
MfeI	CAATTG	2 cut(s)	459, 1776
MflI	RGATCY	1 cut(s)	1348
MhlI	GDGCHC	4 cut(s)	240, 286, 570, 2085
MlsI	TGGCCA	1 cut(s)	1611
MluNI	TGGCCA	1 cut(s)	1611
MlyI	GAGTC	2 cut(s)	1145, 1153
MmeI	TCCRAC	2 cut(s)	445, 2463
Mox20I	TGGCCA	1 cut(s)	1611
Mph1103I	ATGCAT	4 cut(s)	525, 925, 1999, 2305
MroI	TCCGGA	1 cut(s)	541
MroXI	GAANNNNTTC	2 cut(s)	1418, 1620
MscI	TGGCCA	1 cut(s)	1611
MseI	TTAA	5 cut(s)	1124, 1689, 1943, 2100, 2351
MslI	CAYNNNNRTG	5 cut(s)	209, 528, 621, 1401, 1703
Msp20I	TGGCCA	1 cut(s)	1611
MspA1I	CMGCKG	2 cut(s)	256, 2391
MspCI	CTTAAG	1 cut(s)	1688
MspI	CCGG	4 cut(s)	294, 313, 542, 1936
MspR9I	CCNGG	3 cut(s)	313, 1562, 2382
MunI	CAATTG	2 cut(s)	459, 1776
Mva1269I	GAATGC	1 cut(s)	1753
MvaI	CCWGG	2 cut(s)	1562, 2382
MvnI	CGCG	1 cut(s)	2153
MwoI	GCNNNNNNNGC	9 cut(s)	581, 1322, 1382, 1625, 1919, 1994, 2164, 2173, 2426
NciI	CCSGG	1 cut(s)	313
NdeI	CATATG	2 cut(s)	210, 2305
NdeII	GATC	8 cut(s)	136, 747, 1309, 1348, 1581, 1884, 2186, 2245
NlaIV	GGNNCC	2 cut(s)	238, 558
NmuCI	GTSAC	6 cut(s)	427, 853, 1156, 1564, 2017, 2432
NruI	TCGCGA	1 cut(s)	2153
NsbI	TGCGCA	1 cut(s)	2175
NsiI	ATGCAT	4 cut(s)	525, 925, 1999, 2305
NspI	RCATGY	2 cut(s)	923, 2001
NspV	TTCGAA	2 cut(s)	407, 1329
PaeI	GCATGC	2 cut(s)	923, 2001
PceI	AGGCCT	2 cut(s)	500, 1628
PciSI	GCTCTTC	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PctI	GAATGC	1 cut(s)	1753
PdmI	GAANNNNTTC	2 cut(s)	1418, 1620
PfeI	GAWTC	6 cut(s)	127, 409, 1331, 1653, 2377, 2395
PflFI	GACNNNGTC	1 cut(s)	859
PfoI	TCCNGGA	1 cut(s)	2380
PkrI	GCNGC	7 cut(s)	258, 457, 1121, 1378, 2003, 2200, 2390
PleI	GAGTC	2 cut(s)	1145, 1153
PpsI	GAGTC	2 cut(s)	1145, 1153
Ppu21I	YACGTR	1 cut(s)	2287
PsiI	TTATAA	1 cut(s)	977
Psp124BI	GAGCTC	1 cut(s)	286
Psp6I	CCWGG	2 cut(s)	1560, 2380
PspGI	CCWGG	2 cut(s)	1560, 2380
PspN4I	GGNNCC	2 cut(s)	238, 558
PspOMI	GGGCCC	1 cut(s)	236
PspPI	GGNCC	5 cut(s)	214, 236, 237, 1504, 2365
PstNI	CAGNNNCTG	1 cut(s)	2453
PsuI	RGATCY	1 cut(s)	1348
PsyI	GACNNNGTC	1 cut(s)	859
PvuII	CAGCTG	2 cut(s)	256, 2391
RruI	TCGCGA	1 cut(s)	2153
RsaI	GTAC	3 cut(s)	353, 1356, 1686
RsaNI	GTAC	3 cut(s)	352, 1355, 1685
RseI	CAYNNNNRTG	5 cut(s)	209, 528, 621, 1401, 1703
SacI	GAGCTC	1 cut(s)	286
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	5 cut(s)	1124, 1689, 1943, 2100, 2351
SatI	GCNGC	7 cut(s)	257, 456, 1120, 1377, 2002, 2199, 2389
Sau3AI	GATC	8 cut(s)	136, 747, 1309, 1348, 1581, 1884, 2186, 2245
Sau96I	GGNCC	5 cut(s)	214, 236, 237, 1504, 2365
SchI	GAGTC	2 cut(s)	1145, 1153
ScrFI	CCNGG	3 cut(s)	313, 1562, 2382
SduI	GDGCHC	4 cut(s)	240, 286, 570, 2085
SexAI	ACCWGGT	1 cut(s)	1560
SfuI	TTCGAA	2 cut(s)	407, 1329
SinI	GGWCC	2 cut(s)	214, 1504
SmiMI	CAYNNNNRTG	5 cut(s)	209, 528, 621, 1401, 1703
SmlI	CTYRAG	6 cut(s)	218, 569, 1141, 1247, 1515, 1688
SmoI	CTYRAG	6 cut(s)	218, 569, 1141, 1247, 1515, 1688
SnaBI	TACGTA	1 cut(s)	2287
SpeI	ACTAGT	1 cut(s)	367
SphI	GCATGC	2 cut(s)	923, 2001
SseBI	AGGCCT	2 cut(s)	500, 1628
SsiI	CCGC	5 cut(s)	579, 1120, 1376, 1595, 1649
SspMI	CTAG	7 cut(s)	368, 506, 663, 864, 899, 1133, 2228
SstI	GAGCTC	1 cut(s)	286
StuI	AGGCCT	2 cut(s)	500, 1628
StyD4I	CCNGG	3 cut(s)	311, 1560, 2380
StyI	CCWWGG	2 cut(s)	990, 1543
TaaI	ACNGT	5 cut(s)	859, 1226, 1359, 1371, 1970
TaiI	ACGT	1 cut(s)	2289
TaqI	TCGA	7 cut(s)	50, 407, 761, 807, 1329, 1437, 1551
TatI	WGTACW	3 cut(s)	351, 1354, 1684
TauI	GCSGC	2 cut(s)	1122, 1379
TfiI	GAWTC	6 cut(s)	127, 409, 1331, 1653, 2377, 2395
Tru1I	TTAA	5 cut(s)	1124, 1689, 1943, 2100, 2351
Tru9I	TTAA	5 cut(s)	1124, 1689, 1943, 2100, 2351
TscAI	CASTG	3 cut(s)	1229, 1374, 1975
TseFI	GTSAC	6 cut(s)	427, 853, 1156, 1564, 2017, 2432
TseI	GCWGC	5 cut(s)	256, 455, 2001, 2198, 2388
Tsp45I	GTSAC	6 cut(s)	427, 853, 1156, 1564, 2017, 2432
TspDTI	ATGAA	7 cut(s)	36, 605, 720, 1049, 1629, 2145, 2369
TspRI	CASTG	3 cut(s)	1229, 1374, 1975
Tth111I	GACNNNGTC	1 cut(s)	859
Vha464I	CTTAAG	1 cut(s)	1688
VpaK11BI	GGWCC	2 cut(s)	214, 1504
XapI	RAATTY	6 cut(s)	180, 757, 1060, 1198, 1205, 2272
XceI	RCATGY	2 cut(s)	923, 2001
XmiI	GTMKAC	3 cut(s)	273, 1281, 1821
XmnI	GAANNNNTTC	2 cut(s)	1418, 1620
XspI	CTAG	7 cut(s)	368, 506, 663, 864, 899, 1133, 2228
Zsp2I	ATGCAT	4 cut(s)	525, 925, 1999, 2305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.