Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015941

Physical Location & Seq

Genomic Coordinates Forward (+)

3771471 .. 3773035

Gene Structure 1565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGAATGACCAACCATATATGATAGCTTTGCTCTGTTTCTCTTCACTCATGGCTTCTTTACCTTACAGCACCATTCCAAACACACACCTCTCTTCATCCAAACACTCCATACCCATAGAAAACCAAAAACCATCACAAGCCCATTTCCCAAAGCTTCAAGAAAATGCAACCCAGAATCAAACTGATCTGTCCAAATCCTACTTCAATCAGATGTCCAAGCAGAGCCAAATTCAAGAAGCCGTGGACTTGCTCATCCATATGGACCTCAACAGCCTCCACATGGGGCCCGAAATCTACGGCCAGCTGCTTCAGGCGTGTGTCTACGAGCGAGCTCTTCAAACTGGAAAGCAAATCCACGCCCGGATTATCAAGAAAGGTGAGCTGTTTTCAACAAATGAGTACATTGAAACTAAACTAGTGATCTTTTACGCAAAATGCGATGATGGGAAAGCTTCGAATCGTTTGTTTAGAAGGGTGAGATTGAAAAATGTGTATTCTTGGGCTGCAATTGTTGGATTGAATTGTAGATTGGGTTTTTACAAAGACGCCTTGCTAGGGTTTATGGAAATGCATGAAGATGGGTTGTTTCCGGATAATTTTGTGGTTCCGAATGTGCTGAAGGCTTGCGGGGCGATGGAGTGGATTGGAGTTGGGAAAGCAGTTCATGGATATGTGGTCAAGATGGGTTGTAATGGGTGTGTGTTTGTTGCTAGCAGTCTTGTAGATATGTATGGAAAATGTGGGGTTGTGGATGATGCGAGGAAGGTGTTTGATGAAATGGTTGGGAGAAATGTGATCACATGGAATTCGATGCTGGTGAGTTATGTGCAAAATGGATTGAATGAGGATGCTATCAAGGTGTTTTGTGATATGAGGGAGCAAGGCGTTGAACCCACTCATGTGACTGTGTCTGGCTTTCTTTCGGCTTCGGCTAATTTAGGTGCGCTAGAAGAAGGTAAGCAAGTGCATGCATTAGCAGTTGTGAGTGGACTTGAACTGAATACCATTTTGGGGAGTTCTATTATTAACTTTTATTCCAAGGTTGGTTTGATTGAGGATGCTGAAATAGTTTTTAGTAGGATGAATGAGAAAGATGTGGTTACATGGAATTTGCTCATATCTGGGTATTTGCAAATTGGGGATGTTGATAAAGGTCTTGATATGTGCCGCTTAATGAGACTAGAAAACTTGAGGTTTGACTCGGTGACTCTTGCATCCCTTATGTCTGCTTTTGCAGATACACGAAATTTGAAATTTGGCAAGGAGGCGCACTGTTATTGTATAAGGAACAACCTTGAGGGTGATGTGGTTGTTTCAAGTAGTATAGTAGACCTGTATGCCAAATGTGAGAAAATTGATTACGCAAGACGAGCTTTCGAATCTGCAACAACTAGAGATCTTGTACTGTGGAACACGCTGTTGGCGGCTTATGCAGGATTGGGACATAGTGGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

485

Amino Acids

53.97

Weight (kDa)

6.08

Isoelectric Point (pI)

32.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	263 - 309	1.8e-11	PPR repeat family
PPR_3	PF13812	263 - 307	5.5e-06	Pentatricopeptide repeat domain
PPR	PF01535	266 - 296	2.3e-07	PPR repeat
PPR_2	PF13041	364 - 412	3.3e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55740
fragaria_vesca	FvH4_1g04140
malus_domestica	MD02G1039900.v1.1
prunus_persica	Prupe.7G235800_v2.0.a1
pyrus_communis	pycom02g03320
rosa_chinensis	RchiOBHm_Chr2g0089611
rosa_laevigata	RLG00000016045
rosa_multiflora	Rmu_sc0004662.1_g000003
rosa_roxburghii	Rroxscaffold_2G00151710
rosa_rugosa	Rorug02G0002100
rosa_samantha	Rh2AG047400 Rh2BG046100 Rh2CG048000 Rh2DG047500
rosa_wichuraiana	Rw2G003950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1449
AccI	GTMKAC	2 cut(s)	321, 1329
AccIII	TCCGGA	1 cut(s)	589
AciI	CCGC	3 cut(s)	627, 1168, 1424
AcoI	YGGCCR	1 cut(s)	298
AcsI	RAATTY	5 cut(s)	228, 805, 1108, 1246, 1253
AcuI	CTGAAG	2 cut(s)	293, 638
AcyI	GRCGYC	1 cut(s)	546
AfaI	GTAC	2 cut(s)	401, 1404
AfiI	CCNNNNNNNGG	3 cut(s)	280, 555, 1011
AhlI	ACTAGT	1 cut(s)	415
AjuI	GAANNNNNNNTTGG	8 cut(s)	185, 217, 512, 544, 992, 1024, 1403, 1435
AleI	CACNNNNGTG	1 cut(s)	899
AluBI	AGCT	7 cut(s)	26, 154, 304, 332, 382, 452, 1373
AluI	AGCT	7 cut(s)	26, 154, 304, 332, 382, 452, 1373
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	1171
Aor13HI	TCCGGA	1 cut(s)	589
AoxI	GGCC	2 cut(s)	284, 298
ApaI	GGGCCC	1 cut(s)	288
ApeKI	GCWGC	2 cut(s)	304, 503
ApoI	RAATTY	5 cut(s)	228, 805, 1108, 1246, 1253
AspLEI	GCGC	2 cut(s)	946, 1270
AspS9I	GGNCC	3 cut(s)	262, 284, 285
AsuC2I	CCSGG	1 cut(s)	361
AsuHPI	GGTGA	5 cut(s)	389, 487, 829, 1216, 1313
AsuII	TTCGAA	2 cut(s)	455, 1377
AsuNHI	GCTAGC	1 cut(s)	710
AvaII	GGWCC	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	288
BanII	GRGCYC	2 cut(s)	288, 334
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	291, 490
BccI	CCATC	5 cut(s)	139, 437, 572, 628, 676
BceAI	ACGGC	2 cut(s)	224, 313
BclI	TGATCA	1 cut(s)	795
BcnI	CCSGG	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	1171
BcuI	ACTAGT	1 cut(s)	415
BfaI	CTAG	6 cut(s)	416, 554, 711, 947, 1181, 1392
BglII	AGATCT	1 cut(s)	1396
BisI	GCNGC	4 cut(s)	305, 504, 1168, 1425
BlsI	GCNGC	4 cut(s)	306, 505, 1169, 1426
Bme1390I	CCNGG	1 cut(s)	361
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	3 cut(s)	262, 284, 285
BmiI	GGNNCC	3 cut(s)	285, 286, 606
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	5 cut(s)	745, 801, 838, 1048, 1223
BmtI	GCTAGC	1 cut(s)	714
Bpu14I	TTCGAA	2 cut(s)	455, 1377
BpuEI	CTTGAG	2 cut(s)	1210, 1316
BpuMI	CCSGG	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	546
BsaJI	CCNNGG	2 cut(s)	240, 1038
BsaWI	WCCGGW	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 555, 1011
Bse1I	ACTGG	1 cut(s)	346
BseAI	TCCGGA	1 cut(s)	589
BseDI	CCNNGG	2 cut(s)	240, 1038
BseGI	GGATG	8 cut(s)	95, 252, 757, 853, 1063, 1086, 1147, 1214
BseLI	CCNNNNNNNGG	3 cut(s)	280, 555, 1011
BseNI	ACTGG	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	291, 490
BshFI	GGCC	2 cut(s)	286, 300
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	2 cut(s)	361, 590
BslI	CCNNNNNNNGG	3 cut(s)	280, 555, 1011
BsmAI	GTCTC	1 cut(s)	1171
BsnI	GGCC	2 cut(s)	286, 300
Bsp119I	TTCGAA	2 cut(s)	455, 1377
Bsp120I	GGGCCC	1 cut(s)	284
Bsp1286I	GDGCHC	2 cut(s)	288, 334
Bsp13I	TCCGGA	1 cut(s)	589
Bsp143I	GATC	4 cut(s)	184, 420, 795, 1396
BspACI	CCGC	3 cut(s)	627, 1168, 1424
BspANI	GGCC	2 cut(s)	286, 300
BspEI	TCCGGA	1 cut(s)	589
BspLI	GGNNCC	3 cut(s)	285, 286, 606
BspOI	GCTAGC	1 cut(s)	714
BspQI	GCTCTTC	1 cut(s)	339
BspT104I	TTCGAA	2 cut(s)	455, 1377
BsrI	ACTGG	1 cut(s)	346
BssECI	CCNNGG	2 cut(s)	240, 1038
BssMI	GATC	4 cut(s)	184, 420, 795, 1396
BssNI	GRCGYC	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	1038
Bst4CI	ACNGT	3 cut(s)	907, 1274, 1407
Bst6I	CTCTTC	3 cut(s)	46, 97, 339
BstACI	GRCGYC	1 cut(s)	546
BstBI	TTCGAA	2 cut(s)	455, 1377
BstC8I	GCNNGC	5 cut(s)	302, 330, 625, 712, 969
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	8 cut(s)	95, 252, 757, 853, 1063, 1086, 1147, 1214
BstHHI	GCGC	2 cut(s)	946, 1270
BstKTI	GATC	4 cut(s)	187, 423, 798, 1399
BstMAI	GTCTC	1 cut(s)	1171
BstMBI	GATC	4 cut(s)	184, 420, 795, 1396
BstMWI	GCNNNNNNNGC	3 cut(s)	629, 1370, 1430
BstNSI	RCATGY	1 cut(s)	971
BstSCI	CCNGG	1 cut(s)	359
BstSLI	GKGCMC	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	291, 490
BstX2I	RGATCY	1 cut(s)	1396
BstYI	RGATCY	1 cut(s)	1396
BsuRI	GGCC	2 cut(s)	286, 300
BtgI	CCRYGG	1 cut(s)	240
BtgZI	GCGATG	2 cut(s)	453, 647
BtsCI	GGATG	8 cut(s)	95, 252, 757, 853, 1063, 1086, 1147, 1214
BtsIMutI	CAGTG	1 cut(s)	1270
Cac8I	GCNNGC	5 cut(s)	302, 330, 625, 712, 969
CfoI	GCGC	2 cut(s)	946, 1270
Cfr13I	GGNCC	3 cut(s)	262, 284, 285
CseI	GACGC	1 cut(s)	554
Csp6I	GTAC	2 cut(s)	400, 1403
CviAII	CATG	8 cut(s)	49, 280, 572, 665, 801, 899, 968, 1104
CviQI	GTAC	2 cut(s)	400, 1403
DpnI	GATC	4 cut(s)	186, 422, 797, 1398
DpnII	GATC	4 cut(s)	184, 420, 795, 1396
DrdI	GACNNNNNNGTC	1 cut(s)	1449
DseDI	GACNNNNNNGTC	1 cut(s)	1449
EaeI	YGGCCR	1 cut(s)	298
Eam1104I	CTCTTC	3 cut(s)	46, 97, 339
EarI	CTCTTC	3 cut(s)	46, 97, 339
Ecl136II	GAGCTC	1 cut(s)	332
Eco130I	CCWWGG	1 cut(s)	1038
Eco24I	GRGCYC	2 cut(s)	288, 334
Eco47I	GGWCC	1 cut(s)	262
Eco53kI	GAGCTC	1 cut(s)	332
Eco57I	CTGAAG	2 cut(s)	293, 638
EcoICRI	GAGCTC	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRI	GAATTC	1 cut(s)	805
EcoT14I	CCWWGG	1 cut(s)	1038
EcoT22I	ATGCAT	2 cut(s)	573, 973
EcoT38I	GRGCYC	2 cut(s)	288, 334
ErhI	CCWWGG	1 cut(s)	1038
FaeI	CATG	8 cut(s)	52, 283, 575, 668, 804, 902, 971, 1107
FalI	AAGNNNNNCTT	2 cut(s)	1357, 1389
FatI	CATG	8 cut(s)	48, 279, 571, 664, 800, 898, 967, 1103
FauI	CCCGC	1 cut(s)	620
FauNDI	CATATG	1 cut(s)	258
FbaI	TGATCA	1 cut(s)	795
FblI	GTMKAC	2 cut(s)	321, 1329
Fnu4HI	GCNGC	4 cut(s)	305, 504, 1168, 1425
FokI	GGATG	8 cut(s)	82, 239, 764, 860, 1070, 1093, 1154, 1201
FriOI	GRGCYC	2 cut(s)	288, 334
Fsp4HI	GCNGC	4 cut(s)	305, 504, 1168, 1425
FspBI	CTAG	6 cut(s)	416, 554, 711, 947, 1181, 1392
GlaI	GCGC	2 cut(s)	945, 1269
GluI	GCNGC	4 cut(s)	305, 504, 1168, 1425
HaeIII	GGCC	2 cut(s)	286, 300
HapII	CCGG	2 cut(s)	361, 590
HgaI	GACGC	1 cut(s)	554
HhaI	GCGC	2 cut(s)	946, 1270
Hin1I	GRCGYC	1 cut(s)	546
Hin1II	CATG	8 cut(s)	52, 283, 575, 668, 804, 902, 971, 1107
Hin6I	GCGC	2 cut(s)	944, 1268
HinP1I	GCGC	2 cut(s)	944, 1268
HindIII	AAGCTT	2 cut(s)	152, 450
HinfI	GANTC	5 cut(s)	175, 457, 1199, 1207, 1379
HpaII	CCGG	2 cut(s)	361, 590
HphI	GGTGA	5 cut(s)	389, 487, 829, 1216, 1313
Hpy166II	GTNNAC	4 cut(s)	244, 322, 989, 1330
Hpy188I	TCNGA	2 cut(s)	210, 609
Hpy188III	TCNNGA	6 cut(s)	158, 233, 370, 590, 679, 1157
Hpy8I	GTNNAC	4 cut(s)	244, 322, 989, 1330
HpyAV	CCTTC	4 cut(s)	465, 613, 757, 947
HpyCH4III	ACNGT	3 cut(s)	907, 1274, 1407
HpyF10VI	GCNNNNNNNGC	3 cut(s)	629, 1370, 1430
Hsp92I	GRCGYC	1 cut(s)	546
Hsp92II	CATG	8 cut(s)	52, 283, 575, 668, 804, 902, 971, 1107
HspAI	GCGC	2 cut(s)	944, 1268
Kpn2I	TCCGGA	1 cut(s)	589
Ksp22I	TGATCA	1 cut(s)	795
Kzo9I	GATC	4 cut(s)	184, 420, 795, 1396
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	1 cut(s)	877
Lsp1109I	GCAGC	2 cut(s)	291, 490
LweI	GCATC	5 cut(s)	745, 801, 838, 1048, 1223
MaeI	CTAG	6 cut(s)	416, 554, 711, 947, 1181, 1392
MaeIII	GTNAC	3 cut(s)	901, 1099, 1204
MalI	GATC	4 cut(s)	186, 422, 797, 1398
MboI	GATC	4 cut(s)	184, 420, 795, 1396
MboII	GAAGA	5 cut(s)	33, 84, 326, 587, 962
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	1396
MhlI	GDGCHC	2 cut(s)	288, 334
MlyI	GAGTC	2 cut(s)	1193, 1201
MmeI	TCCRAC	1 cut(s)	493
Mph1103I	ATGCAT	2 cut(s)	573, 973
MroI	TCCGGA	1 cut(s)	589
MseI	TTAA	2 cut(s)	1026, 1172
MslI	CAYNNNNRTG	4 cut(s)	257, 576, 669, 899
MspA1I	CMGCKG	1 cut(s)	304
MspI	CCGG	2 cut(s)	361, 590
MspR9I	CCNGG	1 cut(s)	361
MunI	CAATTG	1 cut(s)	507
MwoI	GCNNNNNNNGC	3 cut(s)	629, 1370, 1430
NciI	CCSGG	1 cut(s)	361
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	4 cut(s)	184, 420, 795, 1396
NheI	GCTAGC	1 cut(s)	710
NlaIII	CATG	8 cut(s)	52, 283, 575, 668, 804, 902, 971, 1107
NlaIV	GGNNCC	3 cut(s)	285, 286, 606
NmuCI	GTSAC	2 cut(s)	901, 1204
NsiI	ATGCAT	2 cut(s)	573, 973
NspI	RCATGY	1 cut(s)	971
NspV	TTCGAA	2 cut(s)	455, 1377
OliI	CACNNNNGTG	1 cut(s)	899
PaeI	GCATGC	1 cut(s)	971
PciSI	GCTCTTC	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PfeI	GAWTC	3 cut(s)	175, 457, 1379
PflFI	GACNNNGTC	1 cut(s)	907
PkrI	GCNGC	4 cut(s)	306, 505, 1169, 1426
PleI	GAGTC	2 cut(s)	1193, 1201
PpsI	GAGTC	2 cut(s)	1193, 1201
Psp124BI	GAGCTC	1 cut(s)	334
PspN4I	GGNNCC	3 cut(s)	285, 286, 606
PspOMI	GGGCCC	1 cut(s)	284
PspPI	GGNCC	3 cut(s)	262, 284, 285
PsuI	RGATCY	1 cut(s)	1396
PsyI	GACNNNGTC	1 cut(s)	907
PvuII	CAGCTG	1 cut(s)	304
RsaI	GTAC	2 cut(s)	401, 1404
RsaNI	GTAC	2 cut(s)	400, 1403
RseI	CAYNNNNRTG	4 cut(s)	257, 576, 669, 899
SacI	GAGCTC	1 cut(s)	334
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	2 cut(s)	1026, 1172
SatI	GCNGC	4 cut(s)	305, 504, 1168, 1425
Sau3AI	GATC	4 cut(s)	184, 420, 795, 1396
Sau96I	GGNCC	3 cut(s)	262, 284, 285
SchI	GAGTC	2 cut(s)	1193, 1201
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	2 cut(s)	288, 334
SfaNI	GCATC	5 cut(s)	745, 801, 838, 1048, 1223
SfuI	TTCGAA	2 cut(s)	455, 1377
SinI	GGWCC	1 cut(s)	262
SmiMI	CAYNNNNRTG	4 cut(s)	257, 576, 669, 899
SmlI	CTYRAG	2 cut(s)	1189, 1295
SmoI	CTYRAG	2 cut(s)	1189, 1295
SpeI	ACTAGT	1 cut(s)	415
SphI	GCATGC	1 cut(s)	971
SsiI	CCGC	3 cut(s)	627, 1168, 1424
SspMI	CTAG	6 cut(s)	416, 554, 711, 947, 1181, 1392
SstI	GAGCTC	1 cut(s)	334
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	1038
TaaI	ACNGT	3 cut(s)	907, 1274, 1407
TaqI	TCGA	3 cut(s)	455, 809, 1377
TatI	WGTACW	2 cut(s)	399, 1402
TauI	GCSGC	2 cut(s)	1170, 1427
TfiI	GAWTC	3 cut(s)	175, 457, 1379
Tru1I	TTAA	2 cut(s)	1026, 1172
Tru9I	TTAA	2 cut(s)	1026, 1172
TscAI	CASTG	1 cut(s)	1277
TseFI	GTSAC	2 cut(s)	901, 1204
TseI	GCWGC	2 cut(s)	304, 503
Tsp45I	GTSAC	2 cut(s)	901, 1204
TspDTI	ATGAA	6 cut(s)	17, 84, 588, 653, 789, 1097
TspRI	CASTG	1 cut(s)	1277
Tth111I	GACNNNGTC	1 cut(s)	907
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	5 cut(s)	228, 805, 1108, 1246, 1253
XceI	RCATGY	1 cut(s)	971
XmiI	GTMKAC	2 cut(s)	321, 1329
XspI	CTAG	6 cut(s)	416, 554, 711, 947, 1181, 1392
Zsp2I	ATGCAT	2 cut(s)	573, 973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.