Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015941

Physical Location & Seq

Genomic Coordinates Reverse (-)

88895793 .. 88899393

Gene Structure 3601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00151710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGGCTTCTTTACCTTACAGCACCATTCCAAACACACACCTCTCTTCATCCAAACACTCCAGACCCATAGAAAACCAAAAACCATCACAAGCCCATTTCCCAAAGCTTCAAGAAAATGCAACCCAGAATCAAACTCTGTCCAAATCTTACTTCAATCAGATGTCAACTCTCTCCAAACAGAGCCAAATTCAAGAAGCCGTAGACTTGCTCATCCATATGGACCTCAGGAGCCTCCACATTGGGCCCGAAAGCTACGGCGAGCTGCTTCAGGCGTGCGTCTACGAGCGAGCTCTTCAAACCGGAAAGCAAATCCACGCCCGGATTATCAAGAAAGGTGAGATGTTTTCAACAAATGAGTACATTGAAACTAAACTAGTGATCTTTTACGCAAAATGCGATGATGGGAAAGCTTCGAATCGTTTGTTTAAAAGGGTGAGATTGAAAAATGTGTTTTCTTGGGCTGCAGTTATTGGATTGAATTGTAGATTGGGTTTTTACAAAGAGGCGTTGCTAGGGTTTATGGAAATGCATGAAGATGGGTTGTTACCGGATAATTTTGTGGTTCCGAATGTGTTGAAGGCTTGCGGGGCGATGGAGTGGATTGGAGTTGGGAAAGCAGTTCATGCATATGTGGTCAAGATGGGTTGTAATGGGTGTGTGTTTGTTGCTAGTAGTCTTGTAGATATGTATGGAAAATGTGGGGTTGTGGATGATGCGAGGAAGGTGTTTGATGAAATGGTTGGGAGAAATGTGATCACATGGAATTCGATGCTTGTGAGTTACGTACAAAATGGATTGAATGAGGAAGCTATTAGGGTGTTTTGTGATATGAGGGAGGAAGGCGTTGAACCTACTCATGTGACTGTGTCTAGCTTTCTTTCGGCTTCGGCTAATTTAGGTGCGCTACAAGAAGGTAAGCAAGGGCATGCATTAGCAGTTGTGAGTGGACTTGAACTGAATACCATTTTGGGGAGTTCTATTATAAACTTTTATTCCAAGGTTGGTTTGATTGAGGATGCTGCAATAGTTTTTAGTAGGATGAATGAGAAAGATGTGGTTACATGGAATTTGCTCATATCTGGGTATTTGCAAATTGGAGATGTTGATAAAGGTCTTGATATGTGCCGCTTAATGAGACTAGAAAACTTGAGGTTTGACTCGGTGACTCTTGCATCCCTTGTGTCTGCTTTTGCAGATACACGAAATTTGAAATTTGGCAAGGAGGCGCACTGTTATTGTATAAGGAACAACCTTGAGGGTGATGTGGTTGTTGCAAGTAGTATAGTAGACCTGTATGCCAAATGTGAGAAAATTGATTACGCAAGACGAGCTTTTGAATCTGCAACAACTGGAGATCTTGTACTGTGGAACACACTGTTGGCGGCTTATGCAGGATTGGGACATAGTGGTGAGGCATTGAAATTGTTCTATCAGATGCAACTGGAAAGTGTGCCTCCAAATGTGATGACTTGGAACTCTCTGATATTTGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

498

Amino Acids

55.32

Weight (kDa)

6.33

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	249 - 296	6e-12	PPR repeat family
PPR_3	PF13812	249 - 295	2.5e-06	Pentatricopeptide repeat domain
PPR	PF01535	252 - 282	6e-08	PPR repeat
PPR_2	PF13041	350 - 398	7.4e-08	PPR repeat family
PPR_2	PF13041	452 - 498	1.8e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55740
fragaria_vesca	FvH4_1g04140
malus_domestica	MD02G1039900.v1.1
prunus_persica	Prupe.7G235800_v2.0.a1
pyrus_communis	pycom02g03320
rosa_chinensis	RchiOBHm_Chr2g0089611
rosa_laevigata	RLG00000016045
rosa_multiflora	Rmu_sc0004662.1_g000003
rosa_roxburghii	Rroxscaffold_2G00151710
rosa_rugosa	Rorug02G0002100
rosa_samantha	Rh2AG047400 Rh2BG046100 Rh2CG048000 Rh2DG047500
rosa_wichuraiana	Rw2G003950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	983
AccI	GTMKAC	3 cut(s)	201, 279, 1287
AciI	CCGC	3 cut(s)	585, 1126, 1382
AcsI	RAATTY	5 cut(s)	186, 763, 1066, 1204, 1211
AcuI	CTGAAG	1 cut(s)	251
AfaI	GTAC	3 cut(s)	359, 786, 1362
AfiI	CCNNNNNNNGG	1 cut(s)	969
AhlI	ACTAGT	1 cut(s)	373
AjuI	GAANNNNNNNTTGG	8 cut(s)	134, 166, 470, 502, 950, 982, 1361, 1393
AluBI	AGCT	8 cut(s)	106, 252, 262, 290, 410, 809, 873, 1331
AluI	AGCT	8 cut(s)	106, 252, 262, 290, 410, 809, 873, 1331
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	1129
AoxI	GGCC	1 cut(s)	242
ApaI	GGGCCC	1 cut(s)	246
ApeKI	GCWGC	3 cut(s)	262, 461, 1019
ApoI	RAATTY	5 cut(s)	186, 763, 1066, 1204, 1211
Asp700I	GAANNNNTTC	1 cut(s)	1424
AspLEI	GCGC	2 cut(s)	904, 1228
AspS9I	GGNCC	3 cut(s)	220, 242, 243
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	5 cut(s)	347, 445, 1174, 1271, 1421
AsuII	TTCGAA	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	220
AxyI	CCTNAGG	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	246
BanII	GRGCYC	2 cut(s)	246, 292
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	3 cut(s)	249, 448, 1006
BccI	CCATC	5 cut(s)	91, 395, 530, 586, 634
BceAI	ACGGC	2 cut(s)	182, 271
BclI	TGATCA	1 cut(s)	753
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	1129
BcuI	ACTAGT	1 cut(s)	373
BfaI	CTAG	5 cut(s)	374, 512, 669, 870, 1139
BfmI	CTRYAG	1 cut(s)	462
BglII	AGATCT	1 cut(s)	1354
BisI	GCNGC	5 cut(s)	263, 462, 1020, 1126, 1383
BlsI	GCNGC	5 cut(s)	264, 463, 1021, 1127, 1384
Bme1390I	CCNGG	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	3 cut(s)	220, 242, 243
BmiI	GGNNCC	3 cut(s)	230, 244, 564
BmrFI	CCNGG	1 cut(s)	319
BmsI	GCATC	5 cut(s)	703, 759, 1006, 1181, 1425
BpmI	CTGGAG	2 cut(s)	43, 1371
Bpu14I	TTCGAA	1 cut(s)	413
BpuEI	CTTGAG	2 cut(s)	1168, 1274
BpuMI	CCSGG	1 cut(s)	319
BsaAI	YACGTR	1 cut(s)	784
BsaJI	CCNNGG	1 cut(s)	996
BsaWI	WCCGGW	2 cut(s)	299, 547
BsaXI	ACNNNNNCTCC	2 cut(s)	1344, 1374
Bsc4I	CCNNNNNNNGG	1 cut(s)	969
Bse1I	ACTGG	2 cut(s)	1354, 1446
Bse21I	CCTNAGG	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	996
BseGI	GGATG	6 cut(s)	47, 210, 715, 1021, 1044, 1172
BseLI	CCNNNNNNNGG	1 cut(s)	969
BseMII	CTCAG	1 cut(s)	238
BseNI	ACTGG	2 cut(s)	1354, 1446
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	3 cut(s)	249, 448, 1006
BshFI	GGCC	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	292
BsiSI	CCGG	3 cut(s)	300, 319, 548
BslFI	GGGAC	1 cut(s)	1413
BslI	CCNNNNNNNGG	1 cut(s)	969
BsmAI	GTCTC	1 cut(s)	1129
BsmFI	GGGAC	1 cut(s)	1413
BsnI	GGCC	1 cut(s)	244
Bsp119I	TTCGAA	1 cut(s)	413
Bsp120I	GGGCCC	1 cut(s)	242
Bsp1286I	GDGCHC	2 cut(s)	246, 292
Bsp143I	GATC	3 cut(s)	378, 753, 1354
BspACI	CCGC	3 cut(s)	585, 1126, 1382
BspANI	GGCC	1 cut(s)	244
BspCNI	CTCAG	1 cut(s)	237
BspLI	GGNNCC	3 cut(s)	230, 244, 564
BspMAI	CTGCAG	1 cut(s)	466
BspQI	GCTCTTC	1 cut(s)	297
BspT104I	TTCGAA	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	1354, 1446
BssECI	CCNNGG	1 cut(s)	996
BssMI	GATC	3 cut(s)	378, 753, 1354
BssT1I	CCWWGG	1 cut(s)	996
Bst4CI	ACNGT	4 cut(s)	865, 1232, 1365, 1377
Bst6I	CTCTTC	2 cut(s)	49, 297
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstBAI	YACGTR	1 cut(s)	784
BstBI	TTCGAA	1 cut(s)	413
BstC8I	GCNNGC	5 cut(s)	260, 274, 288, 583, 927
BstDEI	CTNAG	1 cut(s)	224
BstF5I	GGATG	6 cut(s)	47, 210, 715, 1021, 1044, 1172
BstHHI	GCGC	2 cut(s)	904, 1228
BstKTI	GATC	3 cut(s)	381, 756, 1357
BstMAI	GTCTC	1 cut(s)	1129
BstMBI	GATC	3 cut(s)	378, 753, 1354
BstMWI	GCNNNNNNNGC	4 cut(s)	587, 623, 1328, 1388
BstNSI	RCATGY	1 cut(s)	929
BstSCI	CCNGG	1 cut(s)	317
BstSFI	CTRYAG	1 cut(s)	462
BstSLI	GKGCMC	1 cut(s)	246
BstSNI	TACGTA	1 cut(s)	784
BstV1I	GCAGC	3 cut(s)	249, 448, 1006
BstX2I	RGATCY	1 cut(s)	1354
BstYI	RGATCY	1 cut(s)	1354
Bsu36I	CCTNAGG	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	244
BtgZI	GCGATG	2 cut(s)	411, 605
BtsCI	GGATG	6 cut(s)	47, 210, 715, 1021, 1044, 1172
BtsIMutI	CAGTG	2 cut(s)	1228, 1373
Cac8I	GCNNGC	5 cut(s)	260, 274, 288, 583, 927
CfoI	GCGC	2 cut(s)	904, 1228
Cfr13I	GGNCC	3 cut(s)	220, 242, 243
CseI	GACGC	1 cut(s)	265
Csp6I	GTAC	3 cut(s)	358, 785, 1361
CviAII	CATG	6 cut(s)	530, 623, 759, 857, 926, 1062
CviQI	GTAC	3 cut(s)	358, 785, 1361
DdeI	CTNAG	1 cut(s)	224
DpnI	GATC	3 cut(s)	380, 755, 1356
DpnII	GATC	3 cut(s)	378, 753, 1354
DraI	TTTAAA	1 cut(s)	427
Eam1104I	CTCTTC	2 cut(s)	49, 297
EarI	CTCTTC	2 cut(s)	49, 297
Ecl136II	GAGCTC	1 cut(s)	290
Eco105I	TACGTA	1 cut(s)	784
Eco130I	CCWWGG	1 cut(s)	996
Eco24I	GRGCYC	2 cut(s)	246, 292
Eco47I	GGWCC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	251
Eco81I	CCTNAGG	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	763
EcoT14I	CCWWGG	1 cut(s)	996
EcoT22I	ATGCAT	3 cut(s)	531, 628, 931
EcoT38I	GRGCYC	2 cut(s)	246, 292
ErhI	CCWWGG	1 cut(s)	996
FaeI	CATG	6 cut(s)	533, 626, 762, 860, 929, 1065
FalI	AAGNNNNNCTT	2 cut(s)	1315, 1347
FaqI	GGGAC	1 cut(s)	1413
FatI	CATG	6 cut(s)	529, 622, 758, 856, 925, 1061
FauI	CCCGC	1 cut(s)	578
FauNDI	CATATG	2 cut(s)	216, 628
FbaI	TGATCA	1 cut(s)	753
FblI	GTMKAC	3 cut(s)	201, 279, 1287
Fnu4HI	GCNGC	5 cut(s)	263, 462, 1020, 1126, 1383
FokI	GGATG	6 cut(s)	34, 197, 722, 1028, 1051, 1159
FriOI	GRGCYC	2 cut(s)	246, 292
Fsp4HI	GCNGC	5 cut(s)	263, 462, 1020, 1126, 1383
FspBI	CTAG	5 cut(s)	374, 512, 669, 870, 1139
GlaI	GCGC	2 cut(s)	903, 1227
GluI	GCNGC	5 cut(s)	263, 462, 1020, 1126, 1383
GsuI	CTGGAG	2 cut(s)	43, 1371
HaeIII	GGCC	1 cut(s)	244
HapII	CCGG	3 cut(s)	300, 319, 548
HgaI	GACGC	1 cut(s)	265
HhaI	GCGC	2 cut(s)	904, 1228
Hin1II	CATG	6 cut(s)	533, 626, 762, 860, 929, 1065
Hin6I	GCGC	2 cut(s)	902, 1226
HinP1I	GCGC	2 cut(s)	902, 1226
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HindIII	AAGCTT	2 cut(s)	104, 408
HinfI	GANTC	5 cut(s)	127, 415, 1157, 1165, 1337
HpaII	CCGG	3 cut(s)	300, 319, 548
HphI	GGTGA	5 cut(s)	347, 445, 1174, 1271, 1421
Hpy166II	GTNNAC	5 cut(s)	165, 202, 280, 947, 1288
Hpy188I	TCNGA	4 cut(s)	159, 567, 1434, 1482
Hpy188III	TCNNGA	7 cut(s)	60, 110, 191, 226, 328, 637, 1115
Hpy8I	GTNNAC	5 cut(s)	165, 202, 280, 947, 1288
HpyAV	CCTTC	4 cut(s)	571, 715, 833, 905
HpyCH4III	ACNGT	4 cut(s)	865, 1232, 1365, 1377
HpyCH4IV	ACGT	1 cut(s)	783
HpyF10VI	GCNNNNNNNGC	4 cut(s)	587, 623, 1328, 1388
HpyF3I	CTNAG	1 cut(s)	224
HpySE526I	ACGT	1 cut(s)	783
Hsp92II	CATG	6 cut(s)	533, 626, 762, 860, 929, 1065
HspAI	GCGC	2 cut(s)	902, 1226
Ksp22I	TGATCA	1 cut(s)	753
Kzo9I	GATC	3 cut(s)	378, 753, 1354
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	228
Lsp1109I	GCAGC	3 cut(s)	249, 448, 1006
LweI	GCATC	5 cut(s)	703, 759, 1006, 1181, 1425
MaeI	CTAG	5 cut(s)	374, 512, 669, 870, 1139
MaeII	ACGT	1 cut(s)	783
MaeIII	GTNAC	5 cut(s)	543, 779, 859, 1057, 1162
MalI	GATC	3 cut(s)	380, 755, 1356
MboI	GATC	3 cut(s)	378, 753, 1354
MboII	GAAGA	3 cut(s)	36, 284, 545
MflI	RGATCY	1 cut(s)	1354
MhlI	GDGCHC	2 cut(s)	246, 292
MlyI	GAGTC	2 cut(s)	1151, 1159
Mph1103I	ATGCAT	3 cut(s)	531, 628, 931
MroXI	GAANNNNTTC	1 cut(s)	1424
MseI	TTAA	2 cut(s)	426, 1130
MslI	CAYNNNNRTG	4 cut(s)	215, 534, 627, 1407
MspI	CCGG	3 cut(s)	300, 319, 548
MspR9I	CCNGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	4 cut(s)	587, 623, 1328, 1388
NciI	CCSGG	1 cut(s)	319
NdeI	CATATG	2 cut(s)	216, 628
NdeII	GATC	3 cut(s)	378, 753, 1354
NlaIII	CATG	6 cut(s)	533, 626, 762, 860, 929, 1065
NlaIV	GGNNCC	3 cut(s)	230, 244, 564
NmuCI	GTSAC	2 cut(s)	859, 1162
NsiI	ATGCAT	3 cut(s)	531, 628, 931
NspI	RCATGY	1 cut(s)	929
NspV	TTCGAA	1 cut(s)	413
PaeI	GCATGC	1 cut(s)	929
PciSI	GCTCTTC	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	1424
PfeI	GAWTC	3 cut(s)	127, 415, 1337
PflFI	GACNNNGTC	1 cut(s)	865
PkrI	GCNGC	5 cut(s)	264, 463, 1021, 1127, 1384
PleI	GAGTC	2 cut(s)	1151, 1159
PpsI	GAGTC	2 cut(s)	1151, 1159
Ppu21I	YACGTR	1 cut(s)	784
PsiI	TTATAA	1 cut(s)	983
Psp124BI	GAGCTC	1 cut(s)	292
PspN4I	GGNNCC	3 cut(s)	230, 244, 564
PspOMI	GGGCCC	1 cut(s)	242
PspPI	GGNCC	3 cut(s)	220, 242, 243
PstI	CTGCAG	1 cut(s)	466
PsuI	RGATCY	1 cut(s)	1354
PsyI	GACNNNGTC	1 cut(s)	865
RsaI	GTAC	3 cut(s)	359, 786, 1362
RsaNI	GTAC	3 cut(s)	358, 785, 1361
RseI	CAYNNNNRTG	4 cut(s)	215, 534, 627, 1407
SacI	GAGCTC	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	426, 1130
SatI	GCNGC	5 cut(s)	263, 462, 1020, 1126, 1383
Sau3AI	GATC	3 cut(s)	378, 753, 1354
Sau96I	GGNCC	3 cut(s)	220, 242, 243
SchI	GAGTC	2 cut(s)	1151, 1159
ScrFI	CCNGG	1 cut(s)	319
SduI	GDGCHC	2 cut(s)	246, 292
SfaNI	GCATC	5 cut(s)	703, 759, 1006, 1181, 1425
SfcI	CTRYAG	1 cut(s)	462
SfuI	TTCGAA	1 cut(s)	413
SinI	GGWCC	1 cut(s)	220
SmiMI	CAYNNNNRTG	4 cut(s)	215, 534, 627, 1407
SmlI	CTYRAG	2 cut(s)	1147, 1253
SmoI	CTYRAG	2 cut(s)	1147, 1253
SnaBI	TACGTA	1 cut(s)	784
SpeI	ACTAGT	1 cut(s)	373
SphI	GCATGC	1 cut(s)	929
SsiI	CCGC	3 cut(s)	585, 1126, 1382
SspMI	CTAG	5 cut(s)	374, 512, 669, 870, 1139
SstI	GAGCTC	1 cut(s)	292
StyD4I	CCNGG	1 cut(s)	317
StyI	CCWWGG	1 cut(s)	996
TaaI	ACNGT	4 cut(s)	865, 1232, 1365, 1377
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	2 cut(s)	413, 767
TatI	WGTACW	2 cut(s)	357, 1360
TauI	GCSGC	2 cut(s)	1128, 1385
TfiI	GAWTC	3 cut(s)	127, 415, 1337
Tru1I	TTAA	2 cut(s)	426, 1130
Tru9I	TTAA	2 cut(s)	426, 1130
TscAI	CASTG	2 cut(s)	1235, 1380
TseFI	GTSAC	2 cut(s)	859, 1162
TseI	GCWGC	3 cut(s)	262, 461, 1019
Tsp45I	GTSAC	2 cut(s)	859, 1162
TspDTI	ATGAA	5 cut(s)	36, 546, 611, 747, 1055
TspRI	CASTG	2 cut(s)	1235, 1380
Tth111I	GACNNNGTC	1 cut(s)	865
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	5 cut(s)	186, 763, 1066, 1204, 1211
XceI	RCATGY	1 cut(s)	929
XmiI	GTMKAC	3 cut(s)	201, 279, 1287
XmnI	GAANNNNTTC	1 cut(s)	1424
XspI	CTAG	5 cut(s)	374, 512, 669, 870, 1139
Zsp2I	ATGCAT	3 cut(s)	531, 628, 931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.