Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0015941

Physical Location & Seq

Genomic Coordinates Reverse (-)

3715630 .. 3718910

Gene Structure 3281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G003950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2376 bp

ATGCAACCCAGAATCAAACTGATCTGTCCCAAATCCTACTTCAATCAGATGTCCAAACAGAGCCAAATTCAACAAGCCGTGGACTTGCTCATCCATATGGACCTCAAGAGCCTCCACATTGGGCCCGAAATCTACGGCCAGCTGCTTCAGGCGTGTGTCTACGAGCGAGCTCTTCAAACCGGAAAGCAAATCCACGCCCGGATTATCAAGAAAGGTGAGCTGTTTTCAACAAATGAGTACATTGAAACTAAACTAGTCATCTTTTACGCAAAATGCGATGATGGGAAAGCTTCGAATCGCTTGTTTAGAAGGGTGAGATTGAAAAATGTGTTTTCTTGGGCTGCAATTGTTGGATTGAATTGTAGATTGAGTTTTTACAAAGAGGCCTTGCTAGGGTTTATGGAAATGCATCAAGATGGGCTGTTTCCGGATAATTTTGTGGTTCCGAATGTGCTCAAGGCTTGCGGGGCGATGGAGTGGATTGGAGTTGGGAAAGCAGTTCATGGATATGTGGTCAAGATGGGCTGTAATGGGTGTGTGTTTGTTGCTAGTAGTCTTGTAGATATGTATGGAAAATGTGGGGTTGTGGATGAAGCGAGGAAGGTGTTTGAAGAAATGGTTGGGAGAAATGTGATCACATGGAATTCGATGCTGGTGGGTTATGTGCAAAATGGATTGAATGAGGATGCTATCGAGGTGTTTTGTGATATGAGGGAGGAAGGCGTTGAACCTACTCATGTGACTGTGTCTAGCGTTCTTTCGGCTTCGGCTAATTTAGGTGCGCTAGAAGAAGGTAAGCAAGCGCATGCATTAGCAGTTGTGAGTGGACTTGAACTGAATACCATTTTGGGGAGTTCTATTATAAACTTTTATTCCAAGGTTGGTTTGATTGAGGATGCTGAAATAGTTTTTAGTAGGATGAATGAGAAAGATGTGGTTACATGGAATTTGCTCATATCTGGGTATTTGCAAATTGGGGAGGTTGATAAAGGTCTTGATATGTGCCACTTAATGAGACTAGAAAACTTGAGGTTTGACTCGGTGACTCTTGCATCCCTTATGTCTGCTTTTGCAGATACACGAAATTTGAAATTTGGCAAGGAGGCGCACTGTTATTGTATAAGGAACAACCTTGAGGGTGATGTGGTTGTTGCAAGTAGTATAGTAGACCTGTATGCCAAATGTGAGAAAATTGATTACGCAAGACGAGCTTTCGAATCTGCAACAACTGGAGATCTTGTACTGTGGAACACGCTGTTGGCGGCTTATGCAGGATTGGGACATAGTGGTGAGGCATTGAAATTGTTCTATCAGATGCAACTGGAAAGTGTGCCTCCAAATGTCATGACTTGGAACTCTCTGATATTTGGTTTTTTGAAAAATGGTCAGGTCCATGAGGCTCAAGATATGTTCTTGCAGATGCAGTCCCTTGGTGTCGAGCCAAACCTGGTCACTTGGACTACTATGATCTCTGGTCTGGCGGAGAATGGGTTTGGCCATGAAGCAATTCAGGCCTTCCATCGGATGCAAGAAGCGGGAATCAAACCCAATGTTGTGAGTATCATTTGTGTACTTAAGGCTTGCATAGAAATGGCATCATTACAGAATGGAAGAGTTATACATGGGTATTTGATTAGGCATTCCCTCTACCTTTCAATCCCAATTGCAACATCTTTAGTGGATATGTATGCTAAATGTGGTAATGTAGAAGAAGCAAAGAGAGTGTTTGATATGGTGTCAGACAAGGAGTTACCTATCTATAATGCAATGATCTCCAATTACGCATTACATGGTCAAGCTGTGGAAGCTCTTGCACTATACCGGAGTTTAAAGGAAGAAGGCTTACAACCCGACAGTGTAACCTTTACTAATGCCTTATATGCATGTAGCCATGCCAGTCTGGTGACTGAAGGTTTGGAGCTTTTGGATGACTTGTTATCCAATCAAACTATAAATCCAAGTATTGAGCACTATGGTTGTGTGGTTAATCTTCTTTCTCGCTGTGGCAATGTGGATGAAGCTTTTAGGCTTATCGTCGCGATGCCTTATGAGCCTGATGCGCAGATATTGGGATCATTACTTGCAGCTTGTGGAGAACAGAATAACATAGAACTAGAGGAGTATTTGTCCGATCAATTACTGAAATTAGAGCCAGAGAATTCTGGAAACTATGTAGCGATTTCAAATGCATATGCAGTTGCAGGAAGATGGGATGAGGTAAAGAAAGTGAGGCAGTTAATGAAAGAAAAGGGCCTGAGAAAGATTCCTGGATGCAGCTGGATTCAAATTGGAGAAGAAATCCATGCGTTTGTTGCTGGTGACAAATCACACCCAGAAACTGAGCAAATCTATATGACATTGGAATTGTTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

791

Amino Acids

87.95

Weight (kDa)

5.34

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	209 - 256	3.1e-12	PPR repeat family
PPR_3	PF13812	209 - 255	4e-07	Pentatricopeptide repeat domain
PPR	PF01535	212 - 242	4.5e-08	PPR repeat
PPR_2	PF13041	310 - 358	5.9e-08	PPR repeat family
PPR_2	PF13041	412 - 455	1.7e-08	PPR repeat family
PPR_1	PF12854	444 - 474	5.3e-07	PPR repeat
PPR_2	PF13041	446 - 494	1.1e-15	PPR repeat family
PPR	PF01535	450 - 479	4.9e-07	PPR repeat
PPR_3	PF13812	473 - 528	7.5e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	478 - 509	1.2e-06	PPR repeat
PPR_2	PF13041	481 - 528	3.4e-10	PPR repeat family
PPR	PF01535	484 - 514	2.7e-07	PPR repeat
PPR_2	PF13041	586 - 630	7.8e-08	PPR repeat family
E_motif	PF20431	701 - 762	4.3e-23	E motif
Eplus_motif	PF20430	767 - 788	9.8e-07	E+ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015941)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55740
fragaria_vesca	FvH4_1g04140
malus_domestica	MD02G1039900.v1.1
prunus_persica	Prupe.7G235800_v2.0.a1
pyrus_communis	pycom02g03320
rosa_chinensis	RchiOBHm_Chr2g0089611
rosa_laevigata	RLG00000016045
rosa_multiflora	Rmu_sc0004662.1_g000003
rosa_roxburghii	Rroxscaffold_2G00151710
rosa_rugosa	Rorug02G0002100
rosa_samantha	Rh2AG047400 Rh2BG046100 Rh2CG048000 Rh2DG047500
rosa_wichuraiana	Rw2G003950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	863
Acc16I	TGCGCA	1 cut(s)	2061
AccI	GTMKAC	2 cut(s)	159, 1167
AccII	CGCG	1 cut(s)	2039
AccIII	TCCGGA	1 cut(s)	427
AciI	CCGC	4 cut(s)	465, 1262, 1481, 1535
AclWI	GGATC	1 cut(s)	2080
AcoI	YGGCCR	2 cut(s)	136, 1495
AcsI	RAATTY	6 cut(s)	66, 643, 946, 1084, 1091, 2158
AcuI	CTGAAG	2 cut(s)	131, 1929
AfaI	GTAC	3 cut(s)	239, 1242, 1572
AfiI	CCNNNNNNNGG	3 cut(s)	393, 849, 1521
AflII	CTTAAG	1 cut(s)	1574
AhlI	ACTAGT	1 cut(s)	253
AjnI	CCWGG	2 cut(s)	1446, 2266
AjuI	GAANNNNNNNTTGG	8 cut(s)	23, 55, 603, 635, 830, 862, 1241, 1273
Alw21I	GWGCWC	3 cut(s)	172, 456, 1971
Alw26I	GTCTC	1 cut(s)	1009
AlwI	GGATC	1 cut(s)	2080
AlwNI	CAGNNNCTG	1 cut(s)	2339
Aor13HI	TCCGGA	1 cut(s)	427
AoxI	GGCC	6 cut(s)	122, 136, 384, 1495, 1512, 2251
ApaI	GGGCCC	1 cut(s)	126
ApeKI	GCWGC	4 cut(s)	142, 341, 2084, 2274
ApoI	RAATTY	6 cut(s)	66, 643, 946, 1084, 1091, 2158
ArsI	GACNNNNNNTTYG	2 cut(s)	1897, 1929
Asp700I	GAANNNNTTC	2 cut(s)	1304, 1506
AspLEI	GCGC	4 cut(s)	784, 805, 1108, 2062
AspS9I	GGNCC	5 cut(s)	100, 122, 123, 1390, 2251
AsuC2I	CCSGG	1 cut(s)	199
AsuHPI	GGTGA	7 cut(s)	227, 325, 1054, 1151, 1301, 1915, 2330
AsuII	TTCGAA	2 cut(s)	293, 1215
AvaII	GGWCC	2 cut(s)	100, 1390
BaeGI	GKGCMC	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	1497
BanII	GRGCYC	2 cut(s)	126, 172
BarI	GAAGNNNNNNTAC	2 cut(s)	1827, 1859
Bbv12I	GWGCWC	3 cut(s)	172, 456, 1971
BbvI	GCAGC	4 cut(s)	129, 328, 2096, 2286
BccI	CCATC	6 cut(s)	275, 410, 466, 514, 1527, 2202
BceAI	ACGGC	2 cut(s)	62, 151
BciT130I	CCWGG	2 cut(s)	1448, 2268
BclI	TGATCA	1 cut(s)	633
BcnI	CCSGG	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	1009
BcuI	ACTAGT	1 cut(s)	253
BfaI	CTAG	7 cut(s)	254, 392, 549, 750, 785, 1019, 2114
BfrI	CTTAAG	1 cut(s)	1574
BglII	AGATCT	1 cut(s)	1234
BisI	GCNGC	5 cut(s)	143, 342, 1263, 2085, 2275
BlsI	GCNGC	5 cut(s)	144, 343, 1264, 2086, 2276
Bme1390I	CCNGG	3 cut(s)	199, 1448, 2268
Bme18I	GGWCC	2 cut(s)	100, 1390
BmgT120I	GGNCC	5 cut(s)	100, 122, 123, 1390, 2251
BmiI	GGNNCC	2 cut(s)	124, 444
BmrFI	CCNGG	3 cut(s)	199, 1448, 2268
BpmI	CTGGAG	1 cut(s)	1251
Bpu14I	TTCGAA	2 cut(s)	293, 1215
BpuEI	CTTGAG	5 cut(s)	89, 440, 1048, 1154, 1386
BpuMI	CCSGG	1 cut(s)	199
BsaJI	CCNNGG	3 cut(s)	78, 876, 1429
BsaWI	WCCGGW	3 cut(s)	179, 427, 1821
BsaXI	ACNNNNNCTCC	6 cut(s)	1224, 1254, 1475, 1505, 2111, 2141
Bsc4I	CCNNNNNNNGG	3 cut(s)	393, 849, 1521
Bse1I	ACTGG	3 cut(s)	1234, 1326, 1896
Bse3DI	GCAATG	2 cut(s)	1773, 2014
BseAI	TCCGGA	1 cut(s)	427
BseBI	CCWGG	2 cut(s)	1448, 2268
BseDI	CCNNGG	3 cut(s)	78, 876, 1429
BseLI	CCNNNNNNNGG	3 cut(s)	393, 849, 1521
BseMI	GCAATG	2 cut(s)	1773, 2014
BseMII	CTCAG	2 cut(s)	2246, 2331
BseNI	ACTGG	3 cut(s)	1234, 1326, 1896
BseRI	GAGGAG	1 cut(s)	2132
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	4 cut(s)	129, 328, 2096, 2286
Bsh1236I	CGCG	1 cut(s)	2039
BshFI	GGCC	6 cut(s)	124, 138, 386, 1497, 1514, 2253
BsiHKAI	GWGCWC	3 cut(s)	172, 456, 1971
BsiSI	CCGG	4 cut(s)	180, 199, 428, 1822
BslFI	GGGAC	3 cut(s)	12, 1293, 1411
BslI	CCNNNNNNNGG	3 cut(s)	393, 849, 1521
BsmAI	GTCTC	1 cut(s)	1009
BsmFI	GGGAC	3 cut(s)	12, 1293, 1411
BsmI	GAATGC	1 cut(s)	1639
BsnI	GGCC	6 cut(s)	124, 138, 386, 1497, 1514, 2253
Bsp119I	TTCGAA	2 cut(s)	293, 1215
Bsp120I	GGGCCC	1 cut(s)	122
Bsp1286I	GDGCHC	4 cut(s)	126, 172, 456, 1971
Bsp13I	TCCGGA	1 cut(s)	427
Bsp143I	GATC	7 cut(s)	21, 633, 1234, 1467, 1770, 2072, 2131
Bsp68I	TCGCGA	1 cut(s)	2039
BspACI	CCGC	4 cut(s)	465, 1262, 1481, 1535
BspANI	GGCC	6 cut(s)	124, 138, 386, 1497, 1514, 2253
BspCNI	CTCAG	2 cut(s)	2247, 2332
BspEI	TCCGGA	1 cut(s)	427
BspFNI	CGCG	1 cut(s)	2039
BspHI	TCATGA	1 cut(s)	1344
BspLI	GGNNCC	2 cut(s)	124, 444
BspPI	GGATC	1 cut(s)	2080
BspQI	GCTCTTC	1 cut(s)	177
BspT104I	TTCGAA	2 cut(s)	293, 1215
BspTI	CTTAAG	1 cut(s)	1574
BsrDI	GCAATG	2 cut(s)	1773, 2014
BsrI	ACTGG	3 cut(s)	1234, 1326, 1896
BssECI	CCNNGG	3 cut(s)	78, 876, 1429
BssMI	GATC	7 cut(s)	21, 633, 1234, 1467, 1770, 2072, 2131
BssT1I	CCWWGG	2 cut(s)	876, 1429
Bst2UI	CCWGG	2 cut(s)	1448, 2268
Bst4CI	ACNGT	4 cut(s)	745, 1112, 1245, 1856
Bst6I	CTCTTC	2 cut(s)	177, 1606
BstAFI	CTTAAG	1 cut(s)	1574
BstBI	TTCGAA	2 cut(s)	293, 1215
BstC8I	GCNNGC	6 cut(s)	140, 168, 463, 801, 807, 1582
BstDEI	CTNAG	2 cut(s)	2255, 2340
BstDSI	CCRYGG	1 cut(s)	78
BstFNI	CGCG	1 cut(s)	2039
BstHHI	GCGC	4 cut(s)	784, 805, 1108, 2062
BstKTI	GATC	7 cut(s)	24, 636, 1237, 1470, 1773, 2075, 2134
BstMAI	GTCTC	1 cut(s)	1009
BstMBI	GATC	7 cut(s)	21, 633, 1234, 1467, 1770, 2072, 2131
BstMWI	GCNNNNNNNGC	9 cut(s)	467, 1208, 1268, 1511, 1805, 1880, 2050, 2059, 2312
BstNI	CCWGG	2 cut(s)	1448, 2268
BstNSI	RCATGY	2 cut(s)	809, 1887
BstSCI	CCNGG	3 cut(s)	197, 1446, 2266
BstSLI	GKGCMC	1 cut(s)	126
BstUI	CGCG	1 cut(s)	2039
BstV1I	GCAGC	4 cut(s)	129, 328, 2096, 2286
BstX2I	RGATCY	1 cut(s)	1234
BstYI	RGATCY	1 cut(s)	1234
BsuRI	GGCC	6 cut(s)	124, 138, 386, 1497, 1514, 2253
BtgI	CCRYGG	1 cut(s)	78
BtgZI	GCGATG	3 cut(s)	291, 485, 2054
BtsIMutI	CAGTG	2 cut(s)	1108, 1861
BtuMI	TCGCGA	1 cut(s)	2039
Cac8I	GCNNGC	6 cut(s)	140, 168, 463, 801, 807, 1582
CaiI	CAGNNNCTG	1 cut(s)	2339
CciI	TCATGA	1 cut(s)	1344
CfoI	GCGC	4 cut(s)	784, 805, 1108, 2062
Cfr13I	GGNCC	5 cut(s)	100, 122, 123, 1390, 2251
CsiI	ACCWGGT	1 cut(s)	1446
Csp6I	GTAC	3 cut(s)	238, 1241, 1571
CviQI	GTAC	3 cut(s)	238, 1241, 1571
DdeI	CTNAG	2 cut(s)	2255, 2340
DpnI	GATC	7 cut(s)	23, 635, 1236, 1469, 1772, 2074, 2133
DpnII	GATC	7 cut(s)	21, 633, 1234, 1467, 1770, 2072, 2131
DraI	TTTAAA	1 cut(s)	1830
EaeI	YGGCCR	2 cut(s)	136, 1495
Eam1104I	CTCTTC	2 cut(s)	177, 1606
EarI	CTCTTC	2 cut(s)	177, 1606
EciI	GGCGGA	1 cut(s)	1496
Ecl136II	GAGCTC	1 cut(s)	170
Eco130I	CCWWGG	2 cut(s)	876, 1429
Eco147I	AGGCCT	2 cut(s)	386, 1514
Eco24I	GRGCYC	2 cut(s)	126, 172
Eco47I	GGWCC	2 cut(s)	100, 1390
Eco53kI	GAGCTC	1 cut(s)	170
Eco57I	CTGAAG	2 cut(s)	131, 1929
EcoICRI	GAGCTC	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	2251
EcoRI	GAATTC	2 cut(s)	643, 2158
EcoRII	CCWGG	2 cut(s)	1446, 2266
EcoT14I	CCWWGG	2 cut(s)	876, 1429
EcoT22I	ATGCAT	4 cut(s)	411, 811, 1885, 2191
EcoT38I	GRGCYC	2 cut(s)	126, 172
ErhI	CCWWGG	2 cut(s)	876, 1429
FalI	AAGNNNNNCTT	2 cut(s)	1195, 1227
FaqI	GGGAC	3 cut(s)	12, 1293, 1411
FauI	CCCGC	2 cut(s)	458, 1528
FauNDI	CATATG	2 cut(s)	96, 2191
FbaI	TGATCA	1 cut(s)	633
FblI	GTMKAC	2 cut(s)	159, 1167
Fnu4HI	GCNGC	5 cut(s)	143, 342, 1263, 2085, 2275
FriOI	GRGCYC	2 cut(s)	126, 172
Fsp4HI	GCNGC	5 cut(s)	143, 342, 1263, 2085, 2275
FspBI	CTAG	7 cut(s)	254, 392, 549, 750, 785, 1019, 2114
FspI	TGCGCA	1 cut(s)	2061
GlaI	GCGC	4 cut(s)	783, 804, 1107, 2061
GluI	GCNGC	5 cut(s)	143, 342, 1263, 2085, 2275
GsuI	CTGGAG	1 cut(s)	1251
HaeIII	GGCC	6 cut(s)	124, 138, 386, 1497, 1514, 2253
HapII	CCGG	4 cut(s)	180, 199, 428, 1822
HhaI	GCGC	4 cut(s)	784, 805, 1108, 2062
Hin6I	GCGC	4 cut(s)	782, 803, 1106, 2060
HinP1I	GCGC	4 cut(s)	782, 803, 1106, 2060
HindIII	AAGCTT	2 cut(s)	288, 2019
HinfI	GANTC	8 cut(s)	12, 295, 1037, 1045, 1217, 1539, 2263, 2281
HpaII	CCGG	4 cut(s)	180, 199, 428, 1822
HphI	GGTGA	7 cut(s)	227, 325, 1054, 1151, 1301, 1915, 2330
Hpy166II	GTNNAC	5 cut(s)	82, 160, 827, 1168, 1571
Hpy188I	TCNGA	7 cut(s)	48, 447, 1314, 1362, 1524, 1741, 2131
Hpy8I	GTNNAC	5 cut(s)	82, 160, 827, 1168, 1571
Hpy99I	CGWCG	1 cut(s)	2039
HpyAV	CCTTC	7 cut(s)	303, 595, 713, 785, 1525, 1832, 1904
HpyCH4III	ACNGT	4 cut(s)	745, 1112, 1245, 1856
HpyF10VI	GCNNNNNNNGC	9 cut(s)	467, 1208, 1268, 1511, 1805, 1880, 2050, 2059, 2312
HpyF3I	CTNAG	2 cut(s)	2255, 2340
HspAI	GCGC	4 cut(s)	782, 803, 1106, 2060
Kpn2I	TCCGGA	1 cut(s)	427
Ksp22I	TGATCA	1 cut(s)	633
Kzo9I	GATC	7 cut(s)	21, 633, 1234, 1467, 1770, 2072, 2131
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	1918
Lsp1109I	GCAGC	4 cut(s)	129, 328, 2096, 2286
MabI	ACCWGGT	1 cut(s)	1446
MaeI	CTAG	7 cut(s)	254, 392, 549, 750, 785, 1019, 2114
MaeIII	GTNAC	8 cut(s)	739, 937, 1042, 1450, 1749, 1858, 1903, 2318
MalI	GATC	7 cut(s)	23, 635, 1236, 1469, 1772, 2074, 2133
MboI	GATC	7 cut(s)	21, 633, 1234, 1467, 1770, 2072, 2131
MboII	GAAGA	9 cut(s)	164, 623, 800, 1623, 1721, 1847, 1982, 2217, 2306
MfeI	CAATTG	2 cut(s)	345, 1662
MflI	RGATCY	1 cut(s)	1234
MhlI	GDGCHC	4 cut(s)	126, 172, 456, 1971
MlsI	TGGCCA	1 cut(s)	1497
MluNI	TGGCCA	1 cut(s)	1497
MlyI	GAGTC	2 cut(s)	1031, 1039
MmeI	TCCRAC	2 cut(s)	331, 2349
Mox20I	TGGCCA	1 cut(s)	1497
Mph1103I	ATGCAT	4 cut(s)	411, 811, 1885, 2191
MroI	TCCGGA	1 cut(s)	427
MroXI	GAANNNNTTC	2 cut(s)	1304, 1506
MscI	TGGCCA	1 cut(s)	1497
MseI	TTAA	5 cut(s)	1010, 1575, 1829, 1986, 2237
MslI	CAYNNNNRTG	5 cut(s)	95, 414, 507, 1287, 1589
Msp20I	TGGCCA	1 cut(s)	1497
MspA1I	CMGCKG	2 cut(s)	142, 2277
MspCI	CTTAAG	1 cut(s)	1574
MspI	CCGG	4 cut(s)	180, 199, 428, 1822
MspR9I	CCNGG	3 cut(s)	199, 1448, 2268
MunI	CAATTG	2 cut(s)	345, 1662
Mva1269I	GAATGC	1 cut(s)	1639
MvaI	CCWGG	2 cut(s)	1448, 2268
MvnI	CGCG	1 cut(s)	2039
MwoI	GCNNNNNNNGC	9 cut(s)	467, 1208, 1268, 1511, 1805, 1880, 2050, 2059, 2312
NciI	CCSGG	1 cut(s)	199
NdeI	CATATG	2 cut(s)	96, 2191
NdeII	GATC	7 cut(s)	21, 633, 1234, 1467, 1770, 2072, 2131
NlaIV	GGNNCC	2 cut(s)	124, 444
NmuCI	GTSAC	5 cut(s)	739, 1042, 1450, 1903, 2318
NruI	TCGCGA	1 cut(s)	2039
NsbI	TGCGCA	1 cut(s)	2061
NsiI	ATGCAT	4 cut(s)	411, 811, 1885, 2191
NspI	RCATGY	2 cut(s)	809, 1887
NspV	TTCGAA	2 cut(s)	293, 1215
PaeI	GCATGC	1 cut(s)	809
PagI	TCATGA	1 cut(s)	1344
PceI	AGGCCT	2 cut(s)	386, 1514
PciSI	GCTCTTC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PctI	GAATGC	1 cut(s)	1639
PdmI	GAANNNNTTC	2 cut(s)	1304, 1506
PfeI	GAWTC	6 cut(s)	12, 295, 1217, 1539, 2263, 2281
PflFI	GACNNNGTC	1 cut(s)	745
PfoI	TCCNGGA	1 cut(s)	2266
PkrI	GCNGC	5 cut(s)	144, 343, 1264, 2086, 2276
PleI	GAGTC	2 cut(s)	1031, 1039
PpsI	GAGTC	2 cut(s)	1031, 1039
PsiI	TTATAA	1 cut(s)	863
Psp124BI	GAGCTC	1 cut(s)	172
Psp6I	CCWGG	2 cut(s)	1446, 2266
PspGI	CCWGG	2 cut(s)	1446, 2266
PspN4I	GGNNCC	2 cut(s)	124, 444
PspOMI	GGGCCC	1 cut(s)	122
PspPI	GGNCC	5 cut(s)	100, 122, 123, 1390, 2251
PstNI	CAGNNNCTG	1 cut(s)	2339
PsuI	RGATCY	1 cut(s)	1234
PsyI	GACNNNGTC	1 cut(s)	745
PvuII	CAGCTG	2 cut(s)	142, 2277
RruI	TCGCGA	1 cut(s)	2039
RsaI	GTAC	3 cut(s)	239, 1242, 1572
RsaNI	GTAC	3 cut(s)	238, 1241, 1571
RseI	CAYNNNNRTG	5 cut(s)	95, 414, 507, 1287, 1589
SacI	GAGCTC	1 cut(s)	172
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	5 cut(s)	1010, 1575, 1829, 1986, 2237
SatI	GCNGC	5 cut(s)	143, 342, 1263, 2085, 2275
Sau3AI	GATC	7 cut(s)	21, 633, 1234, 1467, 1770, 2072, 2131
Sau96I	GGNCC	5 cut(s)	100, 122, 123, 1390, 2251
SchI	GAGTC	2 cut(s)	1031, 1039
ScrFI	CCNGG	3 cut(s)	199, 1448, 2268
SduI	GDGCHC	4 cut(s)	126, 172, 456, 1971
SexAI	ACCWGGT	1 cut(s)	1446
SfuI	TTCGAA	2 cut(s)	293, 1215
SinI	GGWCC	2 cut(s)	100, 1390
SmiMI	CAYNNNNRTG	5 cut(s)	95, 414, 507, 1287, 1589
SmlI	CTYRAG	6 cut(s)	104, 455, 1027, 1133, 1401, 1574
SmoI	CTYRAG	6 cut(s)	104, 455, 1027, 1133, 1401, 1574
SpeI	ACTAGT	1 cut(s)	253
SphI	GCATGC	1 cut(s)	809
SseBI	AGGCCT	2 cut(s)	386, 1514
SsiI	CCGC	4 cut(s)	465, 1262, 1481, 1535
SspMI	CTAG	7 cut(s)	254, 392, 549, 750, 785, 1019, 2114
SstI	GAGCTC	1 cut(s)	172
StuI	AGGCCT	2 cut(s)	386, 1514
StyD4I	CCNGG	3 cut(s)	197, 1446, 2266
StyI	CCWWGG	2 cut(s)	876, 1429
TaaI	ACNGT	4 cut(s)	745, 1112, 1245, 1856
TaqI	TCGA	5 cut(s)	293, 647, 693, 1215, 1437
TatI	WGTACW	3 cut(s)	237, 1240, 1570
TauI	GCSGC	1 cut(s)	1265
TfiI	GAWTC	6 cut(s)	12, 295, 1217, 1539, 2263, 2281
Tru1I	TTAA	5 cut(s)	1010, 1575, 1829, 1986, 2237
Tru9I	TTAA	5 cut(s)	1010, 1575, 1829, 1986, 2237
TscAI	CASTG	2 cut(s)	1115, 1861
TseFI	GTSAC	5 cut(s)	739, 1042, 1450, 1903, 2318
TseI	GCWGC	4 cut(s)	142, 341, 2084, 2274
Tsp45I	GTSAC	5 cut(s)	739, 1042, 1450, 1903, 2318
TspDTI	ATGAA	6 cut(s)	491, 606, 935, 1515, 2031, 2255
TspRI	CASTG	2 cut(s)	1115, 1861
Tth111I	GACNNNGTC	1 cut(s)	745
Vha464I	CTTAAG	1 cut(s)	1574
VpaK11BI	GGWCC	2 cut(s)	100, 1390
XapI	RAATTY	6 cut(s)	66, 643, 946, 1084, 1091, 2158
XceI	RCATGY	2 cut(s)	809, 1887
XmiI	GTMKAC	2 cut(s)	159, 1167
XmnI	GAANNNNTTC	2 cut(s)	1304, 1506
XspI	CTAG	7 cut(s)	254, 392, 549, 750, 785, 1019, 2114
Zsp2I	ATGCAT	4 cut(s)	411, 811, 1885, 2191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.