Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55740 |
| fragaria_vesca | FvH4_1g04140 |
| malus_domestica | MD02G1039900.v1.1 |
| prunus_persica | Prupe.7G235800_v2.0.a1 |
| pyrus_communis | pycom02g03320 |
| rosa_chinensis | RchiOBHm_Chr2g0089611 |
| rosa_laevigata | RLG00000016045 |
| rosa_multiflora | Rmu_sc0004662.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00151710 |
| rosa_rugosa | Rorug02G0002100 |
| rosa_samantha | Rh2AG047400 Rh2BG046100 Rh2CG048000 Rh2DG047500 |
| rosa_wichuraiana | Rw2G003950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 326, 1349 |
| AarI | CACCTGC | 1 cut(s) | 830 |
| Acc36I | ACCTGC | 1 cut(s) | 830 |
| AccI | GTMKAC | 2 cut(s) | 279, 1287 |
| AccIII | TCCGGA | 1 cut(s) | 403 |
| AciI | CCGC | 2 cut(s) | 464, 1126 |
| AclI | AACGTT | 1 cut(s) | 447 |
| AclWI | GGATC | 2 cut(s) | 1836, 2200 |
| AcoI | YGGCCR | 1 cut(s) | 1504 |
| AcsI | RAATTY | 7 cut(s) | 71, 186, 249, 309, 763, 1066, 1211 |
| AcuI | CTGAAG | 2 cut(s) | 251, 870 |
| AfaI | GTAC | 5 cut(s) | 17, 140, 359, 786, 1692 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1743 |
| AflIII | ACRYGT | 2 cut(s) | 159, 1290 |
| AhlI | ACTAGT | 1 cut(s) | 671 |
| AjiI | CACGTC | 1 cut(s) | 1264 |
| AjnI | CCWGG | 1 cut(s) | 1566 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2018, 2050 |
| Alw21I | GWGCWC | 2 cut(s) | 264, 292 |
| Alw26I | GTCTC | 1 cut(s) | 1129 |
| AlwI | GGATC | 2 cut(s) | 1836, 2200 |
| Aor13HI | TCCGGA | 1 cut(s) | 403 |
| AoxI | GGCC | 4 cut(s) | 181, 241, 1413, 1504 |
| ApeKI | GCWGC | 7 cut(s) | 461, 1382, 1438, 2007, 2204, 2315, 2318 |
| ApoI | RAATTY | 7 cut(s) | 71, 186, 249, 309, 763, 1066, 1211 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2467, 2499 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1424, 1626, 2418 |
| AspS9I | GGNCC | 1 cut(s) | 242 |
| AsuC2I | CCSGG | 1 cut(s) | 2388 |
| AsuHPI | GGTGA | 7 cut(s) | 388, 646, 781, 1421, 2035, 2359, 2450 |
| BalI | TGGCCA | 1 cut(s) | 1506 |
| BanII | GRGCYC | 2 cut(s) | 264, 292 |
| Bbv12I | GWGCWC | 2 cut(s) | 264, 292 |
| BbvI | GCAGC | 7 cut(s) | 448, 1369, 1450, 2019, 2191, 2305, 2327 |
| BccI | CCATC | 6 cut(s) | 135, 211, 481, 725, 2014, 2322 |
| BceAI | ACGGC | 1 cut(s) | 271 |
| BciT130I | CCWGG | 1 cut(s) | 1568 |
| BciVI | GTATCC | 1 cut(s) | 2068 |
| BcnI | CCSGG | 1 cut(s) | 2388 |
| BcoDI | GTCTC | 1 cut(s) | 1129 |
| BcuI | ACTAGT | 1 cut(s) | 671 |
| BfaI | CTAG | 5 cut(s) | 512, 672, 932, 1442, 2234 |
| BfmI | CTRYAG | 1 cut(s) | 2319 |
| BfuAI | ACCTGC | 1 cut(s) | 830 |
| BfuI | GTATCC | 1 cut(s) | 2068 |
| BglII | AGATCT | 1 cut(s) | 1354 |
| BisI | GCNGC | 8 cut(s) | 462, 1126, 1383, 1439, 2008, 2205, 2316, 2319 |
| BlsI | GCNGC | 8 cut(s) | 463, 1127, 1384, 1440, 2009, 2206, 2317, 2320 |
| Bme1390I | CCNGG | 2 cut(s) | 1568, 2388 |
| BmgBI | CACGTC | 1 cut(s) | 1264 |
| BmgT120I | GGNCC | 1 cut(s) | 242 |
| BmrFI | CCNGG | 2 cut(s) | 1568, 2388 |
| BpuEI | CTTGAG | 2 cut(s) | 1168, 2395 |
| BpuMI | CCSGG | 1 cut(s) | 2388 |
| Bsa29I | ATCGAT | 1 cut(s) | 1314 |
| BsaJI | CCNNGG | 2 cut(s) | 996, 1549 |
| BsaWI | WCCGGW | 1 cut(s) | 403 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1743 |
| Bse1I | ACTGG | 2 cut(s) | 142, 1896 |
| Bse3DI | GCAATG | 3 cut(s) | 1228, 1893, 2304 |
| BseAI | TCCGGA | 1 cut(s) | 403 |
| BseBI | CCWGG | 1 cut(s) | 1568 |
| BseCI | ATCGAT | 1 cut(s) | 1314 |
| BseDI | CCNNGG | 2 cut(s) | 996, 1549 |
| BseGI | GGATG | 5 cut(s) | 492, 1021, 2140, 2338, 2396 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1743 |
| BseMI | GCAATG | 3 cut(s) | 1228, 1893, 2304 |
| BseMII | CTCAG | 1 cut(s) | 1035 |
| BseNI | ACTGG | 2 cut(s) | 142, 1896 |
| BseXI | GCAGC | 7 cut(s) | 448, 1369, 1450, 2019, 2191, 2305, 2327 |
| BsgI | GTGCAG | 1 cut(s) | 2026 |
| BshFI | GGCC | 4 cut(s) | 183, 243, 1415, 1506 |
| BshVI | ATCGAT | 1 cut(s) | 1314 |
| BsiHKAI | GWGCWC | 2 cut(s) | 264, 292 |
| BsiSI | CCGG | 2 cut(s) | 404, 2387 |
| BslFI | GGGAC | 2 cut(s) | 1239, 1531 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1743 |
| BsmAI | GTCTC | 1 cut(s) | 1129 |
| BsmFI | GGGAC | 2 cut(s) | 1239, 1531 |
| BsmI | GAATGC | 1 cut(s) | 1759 |
| BsnI | GGCC | 4 cut(s) | 183, 243, 1415, 1506 |
| Bsp1286I | GDGCHC | 2 cut(s) | 264, 292 |
| Bsp13I | TCCGGA | 1 cut(s) | 403 |
| Bsp1407I | TGTACA | 1 cut(s) | 784 |
| Bsp143I | GATC | 4 cut(s) | 1354, 1587, 1828, 2192 |
| BspACI | CCGC | 2 cut(s) | 464, 1126 |
| BspANI | GGCC | 4 cut(s) | 183, 243, 1415, 1506 |
| BspCNI | CTCAG | 1 cut(s) | 1036 |
| BspDI | ATCGAT | 1 cut(s) | 1314 |
| BspEI | TCCGGA | 1 cut(s) | 403 |
| BspMAI | CTGCAG | 1 cut(s) | 2323 |
| BspMI | ACCTGC | 1 cut(s) | 830 |
| BspPI | GGATC | 2 cut(s) | 1836, 2200 |
| BspQI | GCTCTTC | 2 cut(s) | 297, 1726 |
| BsrDI | GCAATG | 3 cut(s) | 1228, 1893, 2304 |
| BsrGI | TGTACA | 1 cut(s) | 784 |
| BsrI | ACTGG | 2 cut(s) | 142, 1896 |
| BssECI | CCNNGG | 2 cut(s) | 996, 1549 |
| BssMI | GATC | 4 cut(s) | 1354, 1587, 1828, 2192 |
| BssT1I | CCWWGG | 2 cut(s) | 996, 1549 |
| Bst2UI | CCWGG | 1 cut(s) | 1568 |
| Bst4CI | ACNGT | 4 cut(s) | 15, 57, 84, 865 |
| Bst6I | CTCTTC | 3 cut(s) | 297, 1345, 1726 |
| BstAUI | TGTACA | 1 cut(s) | 784 |
| BstC8I | GCNNGC | 5 cut(s) | 260, 288, 1380, 1702, 2005 |
| BstDEI | CTNAG | 2 cut(s) | 1044, 1602 |
| BstF5I | GGATG | 5 cut(s) | 492, 1021, 2140, 2338, 2396 |
| BstKTI | GATC | 4 cut(s) | 1357, 1590, 1831, 2195 |
| BstMAI | GTCTC | 1 cut(s) | 1129 |
| BstMBI | GATC | 4 cut(s) | 1354, 1587, 1828, 2192 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 180, 587, 1388, 1925, 2000, 2170, 2315 |
| BstNI | CCWGG | 1 cut(s) | 1568 |
| BstNSI | RCATGY | 3 cut(s) | 163, 929, 1294 |
| BstSCI | CCNGG | 2 cut(s) | 1566, 2386 |
| BstSFI | CTRYAG | 1 cut(s) | 2319 |
| BstV1I | GCAGC | 7 cut(s) | 448, 1369, 1450, 2019, 2191, 2305, 2327 |
| BstX2I | RGATCY | 1 cut(s) | 1354 |
| BstYI | RGATCY | 1 cut(s) | 1354 |
| Bsu15I | ATCGAT | 1 cut(s) | 1314 |
| BsuI | GTATCC | 1 cut(s) | 2068 |
| BsuRI | GGCC | 4 cut(s) | 183, 243, 1415, 1506 |
| BsuTUI | ATCGAT | 1 cut(s) | 1314 |
| BtgZI | GCGATG | 1 cut(s) | 411 |
| BtrI | CACGTC | 1 cut(s) | 1264 |
| BtsCI | GGATG | 5 cut(s) | 492, 1021, 2140, 2338, 2396 |
| BtsIMutI | CAGTG | 1 cut(s) | 1583 |
| BveI | ACCTGC | 1 cut(s) | 830 |
| Cac8I | GCNNGC | 5 cut(s) | 260, 288, 1380, 1702, 2005 |
| Cfr13I | GGNCC | 1 cut(s) | 242 |
| ClaI | ATCGAT | 1 cut(s) | 1314 |
| CsiI | ACCWGGT | 1 cut(s) | 1566 |
| Csp6I | GTAC | 5 cut(s) | 16, 139, 358, 785, 1691 |
| CviQI | GTAC | 5 cut(s) | 16, 139, 358, 785, 1691 |
| DdeI | CTNAG | 2 cut(s) | 1044, 1602 |
| DpnI | GATC | 4 cut(s) | 1356, 1589, 1830, 2194 |
| DpnII | GATC | 4 cut(s) | 1354, 1587, 1828, 2192 |
| EaeI | YGGCCR | 1 cut(s) | 1504 |
| Eam1104I | CTCTTC | 3 cut(s) | 297, 1345, 1726 |
| EarI | CTCTTC | 3 cut(s) | 297, 1345, 1726 |
| Ecl136II | GAGCTC | 2 cut(s) | 262, 290 |
| Eco130I | CCWWGG | 2 cut(s) | 996, 1549 |
| Eco147I | AGGCCT | 1 cut(s) | 1415 |
| Eco24I | GRGCYC | 2 cut(s) | 264, 292 |
| Eco32I | GATATC | 1 cut(s) | 1467 |
| Eco53kI | GAGCTC | 2 cut(s) | 262, 290 |
| Eco57I | CTGAAG | 2 cut(s) | 251, 870 |
| EcoICRI | GAGCTC | 2 cut(s) | 262, 290 |
| EcoRI | GAATTC | 2 cut(s) | 71, 763 |
| EcoRII | CCWGG | 1 cut(s) | 1566 |
| EcoRV | GATATC | 1 cut(s) | 1467 |
| EcoT14I | CCWWGG | 2 cut(s) | 996, 1549 |
| EcoT22I | ATGCAT | 1 cut(s) | 2311 |
| EcoT38I | GRGCYC | 2 cut(s) | 264, 292 |
| ErhI | CCWWGG | 2 cut(s) | 996, 1549 |
| FaqI | GGGAC | 2 cut(s) | 1239, 1531 |
| FauNDI | CATATG | 1 cut(s) | 2311 |
| FblI | GTMKAC | 2 cut(s) | 279, 1287 |
| Fnu4HI | GCNGC | 8 cut(s) | 462, 1126, 1383, 1439, 2008, 2205, 2316, 2319 |
| FokI | GGATG | 5 cut(s) | 499, 1028, 2147, 2345, 2403 |
| FriOI | GRGCYC | 2 cut(s) | 264, 292 |
| Fsp4HI | GCNGC | 8 cut(s) | 462, 1126, 1383, 1439, 2008, 2205, 2316, 2319 |
| FspBI | CTAG | 5 cut(s) | 512, 672, 932, 1442, 2234 |
| GluI | GCNGC | 8 cut(s) | 462, 1126, 1383, 1439, 2008, 2205, 2316, 2319 |
| HaeIII | GGCC | 4 cut(s) | 183, 243, 1415, 1506 |
| HapII | CCGG | 2 cut(s) | 404, 2387 |
| HincII | GTYRAC | 2 cut(s) | 1105, 1513 |
| HindII | GTYRAC | 2 cut(s) | 1105, 1513 |
| HindIII | AAGCTT | 1 cut(s) | 2139 |
| HinfI | GANTC | 6 cut(s) | 1157, 1165, 1256, 1554, 1627, 2383 |
| HpaII | CCGG | 2 cut(s) | 404, 2387 |
| HphI | GGTGA | 7 cut(s) | 388, 646, 781, 1421, 2035, 2359, 2450 |
| Hpy166II | GTNNAC | 8 cut(s) | 18, 202, 280, 917, 1105, 1288, 1513, 1691 |
| Hpy188I | TCNGA | 8 cut(s) | 66, 321, 428, 1261, 1482, 1497, 1632, 2411 |
| Hpy188III | TCNNGA | 3 cut(s) | 110, 404, 500 |
| Hpy8I | GTNNAC | 8 cut(s) | 18, 202, 280, 917, 1105, 1288, 1513, 1691 |
| Hpy99I | CGWCG | 1 cut(s) | 1265 |
| HpyAV | CCTTC | 5 cut(s) | 275, 571, 715, 1952, 2024 |
| HpyCH4III | ACNGT | 4 cut(s) | 15, 57, 84, 865 |
| HpyCH4IV | ACGT | 5 cut(s) | 447, 858, 1263, 2442, 2477 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 180, 587, 1388, 1925, 2000, 2170, 2315 |
| HpyF3I | CTNAG | 2 cut(s) | 1044, 1602 |
| HpySE526I | ACGT | 5 cut(s) | 447, 858, 1263, 2442, 2477 |
| Kpn2I | TCCGGA | 1 cut(s) | 403 |
| Kzo9I | GATC | 4 cut(s) | 1354, 1587, 1828, 2192 |
| LguI | GCTCTTC | 2 cut(s) | 297, 1726 |
| LmnI | GCTCC | 2 cut(s) | 267, 2038 |
| Lsp1109I | GCAGC | 7 cut(s) | 448, 1369, 1450, 2019, 2191, 2305, 2327 |
| MabI | ACCWGGT | 1 cut(s) | 1566 |
| MaeI | CTAG | 5 cut(s) | 512, 672, 932, 1442, 2234 |
| MaeII | ACGT | 5 cut(s) | 447, 858, 1263, 2442, 2477 |
| MalI | GATC | 4 cut(s) | 1356, 1589, 1830, 2194 |
| MboI | GATC | 4 cut(s) | 1354, 1587, 1828, 2192 |
| MboII | GAAGA | 9 cut(s) | 284, 554, 722, 1332, 1743, 1967, 2102, 2337, 2426 |
| MfeI | CAATTG | 1 cut(s) | 1782 |
| MflI | RGATCY | 1 cut(s) | 1354 |
| MhlI | GDGCHC | 2 cut(s) | 264, 292 |
| MlsI | TGGCCA | 1 cut(s) | 1506 |
| MluNI | TGGCCA | 1 cut(s) | 1506 |
| MlyI | GAGTC | 3 cut(s) | 1151, 1159, 1563 |
| MmeI | TCCRAC | 1 cut(s) | 1284 |
| Mox20I | TGGCCA | 1 cut(s) | 1506 |
| Mph1103I | ATGCAT | 1 cut(s) | 2311 |
| MroI | TCCGGA | 1 cut(s) | 403 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1424, 1626, 2418 |
| MscI | TGGCCA | 1 cut(s) | 1506 |
| MseI | TTAA | 8 cut(s) | 440, 813, 984, 1178, 1662, 1949, 2106, 2357 |
| MslI | CAYNNNNRTG | 5 cut(s) | 627, 924, 1407, 1709, 2021 |
| Msp20I | TGGCCA | 1 cut(s) | 1506 |
| MspA1I | CMGCKG | 1 cut(s) | 2318 |
| MspI | CCGG | 2 cut(s) | 404, 2387 |
| MspR9I | CCNGG | 2 cut(s) | 1568, 2388 |
| MunI | CAATTG | 1 cut(s) | 1782 |
| Mva1269I | GAATGC | 1 cut(s) | 1759 |
| MvaI | CCWGG | 1 cut(s) | 1568 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 180, 587, 1388, 1925, 2000, 2170, 2315 |
| NciI | CCSGG | 1 cut(s) | 2388 |
| NdeI | CATATG | 1 cut(s) | 2311 |
| NdeII | GATC | 4 cut(s) | 1354, 1587, 1828, 2192 |
| NmuCI | GTSAC | 6 cut(s) | 84, 754, 1057, 1162, 1570, 2438 |
| NsiI | ATGCAT | 1 cut(s) | 2311 |
| NspI | RCATGY | 3 cut(s) | 163, 929, 1294 |
| PaqCI | CACCTGC | 1 cut(s) | 830 |
| PceI | AGGCCT | 1 cut(s) | 1415 |
| PciI | ACATGT | 2 cut(s) | 159, 1290 |
| PciSI | GCTCTTC | 2 cut(s) | 297, 1726 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 424 |
| PctI | GAATGC | 1 cut(s) | 1759 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1424, 1626, 2418 |
| PfeI | GAWTC | 3 cut(s) | 1256, 1627, 2383 |
| PfoI | TCCNGGA | 1 cut(s) | 2386 |
| PkrI | GCNGC | 8 cut(s) | 463, 1127, 1384, 1440, 2009, 2206, 2317, 2320 |
| PleI | GAGTC | 3 cut(s) | 1151, 1159, 1562 |
| PpsI | GAGTC | 3 cut(s) | 1151, 1159, 1562 |
| PscI | ACATGT | 2 cut(s) | 159, 1290 |
| PsiI | TTATAA | 2 cut(s) | 326, 1349 |
| Psp124BI | GAGCTC | 2 cut(s) | 264, 292 |
| Psp1406I | AACGTT | 1 cut(s) | 447 |
| Psp6I | CCWGG | 1 cut(s) | 1566 |
| PspGI | CCWGG | 1 cut(s) | 1566 |
| PspPI | GGNCC | 1 cut(s) | 242 |
| PstI | CTGCAG | 1 cut(s) | 2323 |
| PsuI | RGATCY | 1 cut(s) | 1354 |
| PvuII | CAGCTG | 1 cut(s) | 2318 |
| RsaI | GTAC | 5 cut(s) | 17, 140, 359, 786, 1692 |
| RsaNI | GTAC | 5 cut(s) | 16, 139, 358, 785, 1691 |
| RseI | CAYNNNNRTG | 5 cut(s) | 627, 924, 1407, 1709, 2021 |
| SacI | GAGCTC | 2 cut(s) | 264, 292 |
| SapI | GCTCTTC | 2 cut(s) | 297, 1726 |
| SaqAI | TTAA | 8 cut(s) | 440, 813, 984, 1178, 1662, 1949, 2106, 2357 |
| SatI | GCNGC | 8 cut(s) | 462, 1126, 1383, 1439, 2008, 2205, 2316, 2319 |
| Sau3AI | GATC | 4 cut(s) | 1354, 1587, 1828, 2192 |
| Sau96I | GGNCC | 1 cut(s) | 242 |
| SchI | GAGTC | 3 cut(s) | 1151, 1159, 1563 |
| ScrFI | CCNGG | 2 cut(s) | 1568, 2388 |
| SduI | GDGCHC | 2 cut(s) | 264, 292 |
| SexAI | ACCWGGT | 1 cut(s) | 1566 |
| SfcI | CTRYAG | 1 cut(s) | 2319 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 627, 924, 1407, 1709, 2021 |
| SmlI | CTYRAG | 2 cut(s) | 1147, 2374 |
| SmoI | CTYRAG | 2 cut(s) | 1147, 2374 |
| SpeI | ACTAGT | 1 cut(s) | 671 |
| SseBI | AGGCCT | 1 cut(s) | 1415 |
| SsiI | CCGC | 2 cut(s) | 464, 1126 |
| SspI | AATATT | 1 cut(s) | 2243 |
| SspMI | CTAG | 5 cut(s) | 512, 672, 932, 1442, 2234 |
| SstI | GAGCTC | 2 cut(s) | 264, 292 |
| StuI | AGGCCT | 1 cut(s) | 1415 |
| StyD4I | CCNGG | 2 cut(s) | 1566, 2386 |
| StyI | CCWWGG | 2 cut(s) | 996, 1549 |
| TaaI | ACNGT | 4 cut(s) | 15, 57, 84, 865 |
| TaiI | ACGT | 5 cut(s) | 450, 861, 1266, 2445, 2480 |
| TaqI | TCGA | 3 cut(s) | 869, 1314, 1848 |
| TatI | WGTACW | 3 cut(s) | 357, 784, 1690 |
| TauI | GCSGC | 1 cut(s) | 1128 |
| TfiI | GAWTC | 3 cut(s) | 1256, 1627, 2383 |
| Tru1I | TTAA | 8 cut(s) | 440, 813, 984, 1178, 1662, 1949, 2106, 2357 |
| Tru9I | TTAA | 8 cut(s) | 440, 813, 984, 1178, 1662, 1949, 2106, 2357 |
| TscAI | CASTG | 1 cut(s) | 1590 |
| TseFI | GTSAC | 6 cut(s) | 84, 754, 1057, 1162, 1570, 2438 |
| TseI | GCWGC | 7 cut(s) | 461, 1382, 1438, 2007, 2204, 2315, 2318 |
| Tsp45I | GTSAC | 6 cut(s) | 84, 754, 1057, 1162, 1570, 2438 |
| TspDTI | ATGAA | 7 cut(s) | 284, 611, 1332, 2043, 2151, 2375, 2411 |
| TspRI | CASTG | 1 cut(s) | 1590 |
| XapI | RAATTY | 7 cut(s) | 71, 186, 249, 309, 763, 1066, 1211 |
| XceI | RCATGY | 3 cut(s) | 163, 929, 1294 |
| XmiI | GTMKAC | 2 cut(s) | 279, 1287 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1424, 1626, 2418 |
| XspI | CTAG | 5 cut(s) | 512, 672, 932, 1442, 2234 |
| Zsp2I | ATGCAT | 1 cut(s) | 2311 |