MD02G1171400.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0012566
Physical Location & Seq
Reverse (-)
14852131 .. 14855091
2961 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1171400.v1.1.491

Sequence Viewer

Length: 2961 bp
ATGAGTTCCTTCCTCCGGCACTCCAATACCCTGTCTTCTTCCCCGTTGATTCTCTCTCTTGTCAGACACAAACATTCTTCAATCAATTCGAGAACACCCCACTTCCTCCGTCTGCTAAACCTCTGCAAAACCTGCGAGGGCTTGAGGCCTCTCACCTCCCTTCTCATCGTACAAGGACTTGTTAAGGATGTTTTTCTGGTGGAGCAATTCGTCAGGTCCTGTTTTCATCTGGGTTCTTCACATTTAGCTCTCTCTCTATTCCAGCAAATCCAAAGGCCAAGTCTTGGCCTGCAGAACCTCGTAATCCGGTACCTTAGCAATCACGGCTTATACCATGAGCTCTTGTATGTCTACCTCCATTCCGGGGCTTCCGGTTGCCCTTCTGATGACTTTACGTTTCCATTCGTCATCAAGGCGTGCGCGGCGCTGGCTGTGATTAGGACTGGGAAAGAGGTTCATGGAGTCGTGATAAGAACTGGGTTCGAGCAAAACCTTGTTATACAGACTGCATTGGTTGATTTCTATGCGAAAACCGGTTGTATGGGGATGGCACGTCAAGTGATTGATAGAATTCCTCAACCAGATTTGGTTGCTTGGAATGCACTCATTGCTGGTTATTCGTCGAACGGATTGAATTGGGAAGCGTTTGATGTTTTCGGGGAGATTCTCGTTATGAATTTGAAGCCGAATTTGAGCACTCTGGCCACTGTTATTCCTGTTTGCACTCGCTTGGGGTGTATGCATACCGGTAAGTCCCTACATTGCTTTGCTCTCAAATCTGGTTACCTGTCGAATAATTTTTTGGTTCCTGCTTTGATTTCAATGTATGCCGGGGATGAGGATTTGTGTGGTGCTAGAAACTTGTTTGATTCTGTACCGGAAAAGAATGCTGTTGTTTGGAATGCTATGATTTCTGCATACACACAAATGCAGAAGGCCATCTCAGCTTTTGAGATGTTCCGTTGTATGCTTCGGGTTGACTTGCAGCCTAATTTCGTCACTTTCGTGTCCGTTATTCCCTCATGTGAGAATTCCAGTAGCCTTTCTTTCGGCGAGTCCCTTCATGCTTGTGTTATTAAACATGGATCAGAAAATCAACTGCCAATCCTAACAGCCCTTGTATCAATGTATGCCAAGCTTGGAGACACTGATTCATCCCAGTATCTTTTCGAGCCAATGCCCAGTAAAAACCTTCTTTTGTGGAACTCAATGATTTCTGGGTACGTGTACAACGGGCTATGGAATTTAAGTCTCGGTGTATTTCGTGAAATGCAATTTTCAGGGTTTGTTCCAGATGCAGTCTCCATCGTTAGTGTTCTTTCTGCTTGCTCCAAACTTGAGGCGGATTTAGTGGGGAAGTCTGTGCATGCATTTAGTATTAGGAAGGGTTTCCTCTCAAATCTCAATCTGTCAAATGCCCTGTTGGCATTTTACTCTGATTGTCATCGCCTCTCCTATTCAATTACTTTGCTGCGTGAAATGCCTACAAAAAATTCCATAACATGGAACACGTTAATATCCGGTTGTGTGCACCACTGCAAGATGGAAAAGGCGGTTGCCTTTTACCACCAGATGCAGAAAGAGGGCTTCCAGTTGGACCTAGTCACCCTGATAAGCATACTCCCTAGTCTCGGTGAGAAGGAAAGCTTAGGGCAAGGAATGGCTATTCATGGTTACGCTATAAAAAAAGGGTTCTCTTCTGACATTTCTATGGGAAATTCACTTATTAGCATGTATTGCAACTGTGGAGACCTTGATGCCGGGACGTTACTTTTCAAAGTCATGCCAACAAGGAGTGTGGTGTCTTGGAATGCTCTGATGACTGGCTTCCGAAACCACAATTTACAGAATGAGGTTTGGGTCTTGTTTGGTGAAATGATAAAGGATGATGAGAGACCAAATTACGTAACTTTGCTAAATTTATTGCCAGCATGCCGCACACAATTACAGGGTAAGTCTATCCATGCTGTCACCTTCAGAACCGGAATTGTAGAAGAAACCCCTCTCCATACATCACTTATGTTCATGTATGCTAGATTTGAGAACATTAACTCTTGCCTGTTACAGTTCCAAACGGGAAACATGAAGGATATTTCGCTGTGGAATGCGTTTTTGTCTGTGCAGATACAAACTAAAAATAGTGAAATTGCAGTTTCATTTTTCCGTGGATTGCTTCGGATGGGATTGGAACCCGACAATGTGACAGTTCTGAGTTTAGTTTCTGCTTGTGTTCAACTCAATAGCCTCAATCTTGCAGATTCTGTAACGGCGTACATAATACGAAAAGGCTTTGACAAAGATCTGGTTATCAGCAATGCCCTAATCAATATGCTTGCAAGATGCGGAAACATATTGAGTGCAAGGAAGCTGTTTGAAGGGCTGGTTGAAAAGGATTCCGTGTCGTGGAATGTGATGATTAATGGATACGGTCTGCACGGGGACGGTGAAGGTGCCCTAGATCTTTTCTTGCAGATGAAGCTTTCAGGAGTAAAACCTAATGGGATTACATATTCAAGTATTCTATCAGCCTGCAGCCATTGCGGCTTGGTCGAGCAAGGCCGGTTGGTATTCAACTCTATGGCGGAACGTGGGATATCACCCGAAATCGAGCATTATGCCTGCATGGTGGATCTTTTCGGAAGAACAGGTAACCTGACTGAGGCTTATGGCATTGTTAGGGCACTGCCCTTTAAACCTTCAACAAGTATGCTTGAATCTTTGTTGGGGGCCTGTAGAATCCATGAGGACGTTGAACTTGGCGAAAGAATTGGTAGGATGCTTTCGGAATCGGACCCGGAAAACTCGAGATCGCATGTGATGCTTTACAATGTGTATGCAGCAGCTGGGAGGTGGGGAGATGCTGAAAGAGTGAGGTCTGAGATGGAAGAAAGACATCTGAGAAAAGTACCTGGATTTAGTCTTGTCATGGGAATTGGATTCAATGATAAGGAAGTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 WEMBL

Protein Analysis

987

Amino Acids

109.3

Weight (kDa)

7.13

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 194 - 240 8.7e-07 PPR repeat family
PPR_2 PF13041 296 - 342 1.8e-06 PPR repeat family
PPR_2 PF13041 398 - 445 1.1e-06 PPR repeat family
PPR_2 PF13041 497 - 540 2.2e-10 PPR repeat family
PPR PF01535 500 - 530 3e-07 PPR repeat
PPR_2 PF13041 797 - 845 1.2e-13 PPR repeat family
PPR PF01535 800 - 830 6.5e-08 PPR repeat
E_motif PF20431 914 - 975 1.6e-13 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 140
Acc65I GGTACC 1 cut(s) 309
AccB1I GGYRCC 2 cut(s) 309, 2450
AccB7I CCANNNNNTGG 2 cut(s) 284, 1503
AccI GTMKAC 1 cut(s) 351
AccII CGCG 1 cut(s) 422
AciI CCGC 7 cut(s) 422, 1343, 1553, 1936, 2343, 2541, 2582
AclWI GGATC 2 cut(s) 1093, 2637
AcoI YGGCCR 1 cut(s) 702
AcsI RAATTY 8 cut(s) 570, 676, 688, 1030, 1243, 1492, 1717, 1918
AcuI CTGAAG 1 cut(s) 1960
AfaI GTAC 7 cut(s) 171, 311, 876, 1223, 1229, 2273, 2907
AfiI CCNNNNNNNGG 7 cut(s) 15, 284, 364, 1503, 1631, 2403, 2659
AflIII ACRYGT 2 cut(s) 1224, 1509
AgeI ACCGGT 2 cut(s) 533, 746
AjiI CACGTC 1 cut(s) 554
AjnI CCWGG 1 cut(s) 2908
AjuI GAANNNNNNNTTGG 2 cut(s) 785, 817
AleI CACNNNNGTG 1 cut(s) 1004
AluBI AGCT 8 cut(s) 248, 340, 947, 1138, 1647, 2368, 2479, 2843
AluI AGCT 8 cut(s) 248, 340, 947, 1138, 1647, 2368, 2479, 2843
Alw21I GWGCWC 3 cut(s) 342, 698, 1533
Alw26I GTCTC 6 cut(s) 1137, 1256, 1306, 1634, 1743, 1888
Alw44I GTGCAC 1 cut(s) 1529
AlwI GGATC 2 cut(s) 1093, 2637
AlwNI CAGNNNCTG 3 cut(s) 219, 2261, 2843
Ama87I CYCGRG 1 cut(s) 2803
AoxI GGCC 7 cut(s) 146, 275, 286, 702, 936, 2557, 2727
ApaLI GTGCAC 1 cut(s) 1529
ApeKI GCWGC 5 cut(s) 985, 1471, 2532, 2837, 2840
ApoI RAATTY 8 cut(s) 570, 676, 688, 1030, 1243, 1492, 1717, 1918
ArsI GACNNNNNNTTYG 2 cut(s) 265, 297
AseI ATTAAT 1 cut(s) 2418
AsiGI ACCGGT 2 cut(s) 533, 746
Asp700I GAANNNNTTC 1 cut(s) 1388
Asp718I GGTACC 1 cut(s) 309
AspLEI GCGC 2 cut(s) 422, 427
AspS9I GGNCC 4 cut(s) 216, 1597, 2727, 2791
AsuC2I CCSGG 4 cut(s) 364, 832, 1762, 2795
AsuHPI GGTGA 7 cut(s) 145, 1597, 1646, 1883, 1963, 2456, 2589
AvaI CYCGRG 1 cut(s) 2803
AvaII GGWCC 3 cut(s) 216, 1597, 2791
BaeGI GKGCMC 3 cut(s) 1533, 2455, 2683
BalI TGGCCA 1 cut(s) 704
BanI GGYRCC 2 cut(s) 309, 2450
BanII GRGCYC 1 cut(s) 342
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 3 cut(s) 342, 698, 1533
BbvI GCAGC 5 cut(s) 997, 1458, 2544, 2849, 2852
BccI CCATC 6 cut(s) 541, 947, 1313, 1537, 2173, 2875
BceAI ACGGC 2 cut(s) 340, 2283
BcgI CGANNNNNNTGC 2 cut(s) 2597, 2631
BciT130I CCWGG 1 cut(s) 2910
BciVI GTATCC 1 cut(s) 2417
BcnI CCSGG 4 cut(s) 364, 832, 1762, 2795
BcoDI GTCTC 6 cut(s) 1137, 1256, 1306, 1634, 1743, 1888
BfaI CTAG 5 cut(s) 855, 1601, 1626, 2034, 2456
BfmI CTRYAG 3 cut(s) 290, 2530, 2731
BfoI RGCGCY 1 cut(s) 428
BfuAI ACCTGC 1 cut(s) 140
BfuI GTATCC 1 cut(s) 2417
BglI GCCNNNNNGGC 2 cut(s) 1424, 2541
BglII AGATCT 2 cut(s) 2299, 2458
BisI GCNGC 8 cut(s) 423, 986, 1472, 1936, 2533, 2542, 2838, 2841
BlsI GCNGC 8 cut(s) 424, 987, 1473, 1937, 2534, 2543, 2839, 2842
Bme1390I CCNGG 5 cut(s) 364, 832, 1762, 2795, 2910
Bme18I GGWCC 3 cut(s) 216, 1597, 2791
BmeT110I CYCGRG 1 cut(s) 2803
BmgBI CACGTC 1 cut(s) 554
BmgT120I GGNCC 4 cut(s) 216, 1597, 2727, 2791
BmiI GGNNCC 6 cut(s) 311, 807, 2190, 2452, 2728, 2793
BmrFI CCNGG 5 cut(s) 364, 832, 1762, 2795, 2910
BmrI ACTGGG 4 cut(s) 453, 486, 1153, 1176
BmsI GCATC 7 cut(s) 1285, 1563, 1747, 2330, 2766, 2808, 2848
BmuI ACTGGG 4 cut(s) 453, 486, 1153, 1176
BpiI GAAGAC 1 cut(s) 27
Bpu10I CCTNAGC 2 cut(s) 314, 1648
BpuEI CTTGAG 2 cut(s) 163, 1358
BpuMI CCSGG 4 cut(s) 364, 832, 1762, 2795
BsaAI YACGTR 2 cut(s) 1225, 1906
BsaBI GATNNNNATC 1 cut(s) 1443
BsaI GGTCTC 2 cut(s) 1743, 1888
BsaJI CCNNGG 3 cut(s) 363, 831, 2164
BsaWI WCCGGW 7 cut(s) 306, 371, 533, 746, 877, 1520, 1982
Bsc4I CCNNNNNNNGG 7 cut(s) 15, 284, 364, 1503, 1631, 2403, 2659
Bse118I RCCGGY 3 cut(s) 533, 746, 2559
Bse1I ACTGG 7 cut(s) 448, 481, 1035, 1159, 1182, 1591, 1828
Bse3DI GCAATG 4 cut(s) 606, 760, 2320, 2536
Bse8I GATNNNNATC 1 cut(s) 1443
BseBI CCWGG 1 cut(s) 2910
BseDI CCNNGG 3 cut(s) 363, 831, 2164
BseGI GGATG 7 cut(s) 193, 552, 841, 1154, 1891, 2184, 2781
BseJI GATNNNNATC 1 cut(s) 1443
BseLI CCNNNNNNNGG 7 cut(s) 15, 284, 364, 1503, 1631, 2403, 2659
BseMI GCAATG 4 cut(s) 606, 760, 2320, 2536
BseMII CTCAG 5 cut(s) 957, 2201, 2649, 2868, 2888
BseNI ACTGG 7 cut(s) 448, 481, 1035, 1159, 1182, 1591, 1828
BseSI GKGCMC 3 cut(s) 1533, 2455, 2683
BseXI GCAGC 5 cut(s) 997, 1458, 2544, 2849, 2852
BseYI CCCAGC 1 cut(s) 2843
BsgI GTGCAG 2 cut(s) 2141, 2417
Bsh1236I CGCG 1 cut(s) 422
BshFI GGCC 7 cut(s) 148, 277, 288, 704, 938, 2559, 2729
BshNI GGYRCC 2 cut(s) 309, 2450
BshTI ACCGGT 2 cut(s) 533, 746
BsiHKAI GWGCWC 3 cut(s) 342, 698, 1533
BsiHKCI CYCGRG 1 cut(s) 2803
BslFI GGGAC 4 cut(s) 739, 1042, 1777, 2453
BslI CCNNNNNNNGG 7 cut(s) 15, 284, 364, 1503, 1631, 2403, 2659
BsmAI GTCTC 6 cut(s) 1137, 1256, 1306, 1634, 1743, 1888
BsmFI GGGAC 4 cut(s) 739, 1042, 1777, 2453
BsmI GAATGC 5 cut(s) 604, 892, 907, 1816, 2110
BsnI GGCC 7 cut(s) 148, 277, 288, 704, 938, 2559, 2729
Bso31I GGTCTC 2 cut(s) 1743, 1888
BsoBI CYCGRG 1 cut(s) 2803
Bsp1286I GDGCHC 5 cut(s) 342, 698, 1533, 2455, 2683
Bsp1407I TGTACA 1 cut(s) 1227
Bsp143I GATC 5 cut(s) 1085, 2299, 2458, 2629, 2807
BspACI CCGC 7 cut(s) 422, 1343, 1553, 1936, 2343, 2541, 2582
BspANI GGCC 7 cut(s) 148, 277, 288, 704, 938, 2559, 2729
BspCNI CTCAG 5 cut(s) 956, 2202, 2650, 2869, 2889
BspFNI CGCG 1 cut(s) 422
BspLI GGNNCC 6 cut(s) 311, 807, 2190, 2452, 2728, 2793
BspMAI CTGCAG 2 cut(s) 294, 2534
BspMI ACCTGC 1 cut(s) 140
BspPI GGATC 2 cut(s) 1093, 2637
BspT107I GGYRCC 2 cut(s) 309, 2450
BspTNI GGTCTC 2 cut(s) 1743, 1888
BsrDI GCAATG 4 cut(s) 606, 760, 2320, 2536
BsrFI RCCGGY 3 cut(s) 533, 746, 2559
BsrGI TGTACA 1 cut(s) 1227
BsrI ACTGG 7 cut(s) 448, 481, 1035, 1159, 1182, 1591, 1828
BssAI RCCGGY 3 cut(s) 533, 746, 2559
BssECI CCNNGG 3 cut(s) 363, 831, 2164
BssMI GATC 5 cut(s) 1085, 2299, 2458, 2629, 2807
Bst2UI CCWGG 1 cut(s) 2910
Bst4CI ACNGT 6 cut(s) 709, 1745, 2067, 2206, 2429, 2444
Bst6I CTCTTC 1 cut(s) 1702
BstAPI GCANNNNNTGC 5 cut(s) 132, 608, 1737, 2538, 2818
BstAUI TGTACA 1 cut(s) 1227
BstBAI YACGTR 2 cut(s) 1225, 1906
BstDEI CTNAG 7 cut(s) 314, 943, 1648, 2210, 2658, 2877, 2897
BstDSI CCRYGG 1 cut(s) 2164
BstEII GGTNACC 2 cut(s) 782, 2648
BstENI CCTNNNNNAGG 1 cut(s) 2657
BstF5I GGATG 7 cut(s) 193, 552, 841, 1154, 1891, 2184, 2781
BstFNI CGCG 1 cut(s) 422
BstH2I RGCGCY 1 cut(s) 428
BstHHI GCGC 2 cut(s) 422, 427
BstKTI GATC 5 cut(s) 1088, 2302, 2461, 2632, 2810
BstMAI GTCTC 6 cut(s) 1137, 1256, 1306, 1634, 1743, 1888
BstMBI GATC 5 cut(s) 1085, 2299, 2458, 2629, 2807
BstNI CCWGG 1 cut(s) 2910
BstNSI RCATGY 4 cut(s) 1370, 1735, 1935, 2816
BstPI GGTNACC 2 cut(s) 782, 2648
BstSCI CCNGG 5 cut(s) 362, 830, 1760, 2793, 2908
BstSFI CTRYAG 3 cut(s) 290, 2530, 2731
BstSLI GKGCMC 3 cut(s) 1533, 2455, 2683
BstSNI TACGTA 1 cut(s) 1906
BstUI CGCG 1 cut(s) 422
BstV1I GCAGC 5 cut(s) 997, 1458, 2544, 2849, 2852
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 3 cut(s) 2299, 2458, 2629
BstYI RGATCY 3 cut(s) 2299, 2458, 2629
BsuI GTATCC 1 cut(s) 2417
BsuRI GGCC 7 cut(s) 148, 277, 288, 704, 938, 2559, 2729
BtgI CCRYGG 1 cut(s) 2164
BtgZI GCGATG 1 cut(s) 1430
BtrI CACGTC 1 cut(s) 554
BtsCI GGATG 7 cut(s) 193, 552, 841, 1154, 1891, 2184, 2781
BtsI GCAGTG 2 cut(s) 1534, 2681
BtsIMutI CAGTG 4 cut(s) 705, 1146, 1534, 2681
BveI ACCTGC 1 cut(s) 140
CaiI CAGNNNCTG 3 cut(s) 219, 2261, 2843
CfoI GCGC 2 cut(s) 422, 427
Cfr10I RCCGGY 3 cut(s) 533, 746, 2559
Cfr13I GGNCC 4 cut(s) 216, 1597, 2727, 2791
Csp6I GTAC 7 cut(s) 170, 310, 875, 1222, 1228, 2272, 2906
CspAI ACCGGT 2 cut(s) 533, 746
CspCI CAANNNNNGTGG 2 cut(s) 1779, 1814
CviQI GTAC 7 cut(s) 170, 310, 875, 1222, 1228, 2272, 2906
DdeI CTNAG 7 cut(s) 314, 943, 1648, 2210, 2658, 2877, 2897
DpnI GATC 5 cut(s) 1087, 2301, 2460, 2631, 2809
DpnII GATC 5 cut(s) 1085, 2299, 2458, 2629, 2807
DraI TTTAAA 1 cut(s) 2692
EaeI YGGCCR 1 cut(s) 702
Eam1104I CTCTTC 1 cut(s) 1702
EarI CTCTTC 1 cut(s) 1702
EciI GGCGGA 2 cut(s) 1358, 2597
Ecl136II GAGCTC 1 cut(s) 340
Eco105I TACGTA 1 cut(s) 1906
Eco147I AGGCCT 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 342
Eco31I GGTCTC 2 cut(s) 1743, 1888
Eco32I GATATC 1 cut(s) 2595
Eco47I GGWCC 3 cut(s) 216, 1597, 2791
Eco53kI GAGCTC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 1960
Eco88I CYCGRG 1 cut(s) 2803
Eco91I GGTNACC 2 cut(s) 782, 2648
EcoICRI GAGCTC 1 cut(s) 340
EcoNI CCTNNNNNAGG 1 cut(s) 2657
EcoO109I RGGNCCY 2 cut(s) 216, 2727
EcoO65I GGTNACC 2 cut(s) 782, 2648
EcoRI GAATTC 2 cut(s) 570, 1030
EcoRII CCWGG 1 cut(s) 2908
EcoRV GATATC 1 cut(s) 2595
EcoT22I ATGCAT 2 cut(s) 744, 1372
EcoT38I GRGCYC 1 cut(s) 342
FalI AAGNNNNNCTT 2 cut(s) 1631, 1663
FaqI GGGAC 4 cut(s) 739, 1042, 1777, 2453
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 8 cut(s) 423, 986, 1472, 1936, 2533, 2542, 2838, 2841
FokI GGATG 7 cut(s) 200, 559, 848, 1141, 1898, 2191, 2788
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 8 cut(s) 423, 986, 1472, 1936, 2533, 2542, 2838, 2841
FspBI CTAG 5 cut(s) 855, 1601, 1626, 2034, 2456
GlaI GCGC 2 cut(s) 421, 426
GluI GCNGC 8 cut(s) 423, 986, 1472, 1936, 2533, 2542, 2838, 2841
GsaI CCCAGC 1 cut(s) 2847
HaeII RGCGCY 1 cut(s) 428
HaeIII GGCC 7 cut(s) 148, 277, 288, 704, 938, 2559, 2729
HhaI GCGC 2 cut(s) 422, 427
Hin6I GCGC 2 cut(s) 420, 425
HinP1I GCGC 2 cut(s) 420, 425
HincII GTYRAC 1 cut(s) 979
HindII GTYRAC 1 cut(s) 979
HindIII AAGCTT 3 cut(s) 1136, 1645, 2477
HphI GGTGA 7 cut(s) 145, 1597, 1646, 1883, 1963, 2456, 2589
Hpy166II GTNNAC 4 cut(s) 352, 979, 1228, 1531
Hpy188III TCNNGA 6 cut(s) 90, 466, 1265, 1292, 2484, 2805
Hpy8I GTNNAC 4 cut(s) 352, 979, 1228, 1531
Hpy99I CGWCG 1 cut(s) 625
HpyCH4III ACNGT 6 cut(s) 709, 1745, 2067, 2206, 2429, 2444
HpyCH4IV ACGT 8 cut(s) 395, 553, 1224, 1511, 1766, 1905, 2587, 2748
HpyF3I CTNAG 7 cut(s) 314, 943, 1648, 2210, 2658, 2877, 2897
HpySE526I ACGT 8 cut(s) 395, 553, 1224, 1511, 1766, 1905, 2587, 2748
HspAI GCGC 2 cut(s) 420, 425
KpnI GGTACC 1 cut(s) 313
Kzo9I GATC 5 cut(s) 1085, 2299, 2458, 2629, 2807
LmnI GCTCC 2 cut(s) 202, 1334
Lsp1109I GCAGC 5 cut(s) 997, 1458, 2544, 2849, 2852
LweI GCATC 7 cut(s) 1285, 1563, 1747, 2330, 2766, 2808, 2848
MaeI CTAG 5 cut(s) 855, 1601, 1626, 2034, 2456
MaeII ACGT 8 cut(s) 395, 553, 1224, 1511, 1766, 1905, 2587, 2748
MalI GATC 5 cut(s) 1087, 2301, 2460, 2631, 2809
MboI GATC 5 cut(s) 1085, 2299, 2458, 2629, 2807
MboII GAAGA 8 cut(s) 27, 30, 69, 228, 1689, 2006, 2652, 2897
MflI RGATCY 3 cut(s) 2299, 2458, 2629
MhlI GDGCHC 5 cut(s) 342, 698, 1533, 2455, 2683
MlsI TGGCCA 1 cut(s) 704
MluNI TGGCCA 1 cut(s) 704
MlyI GAGTC 2 cut(s) 471, 1064
MmeI TCCRAC 1 cut(s) 1575
Mox20I TGGCCA 1 cut(s) 704
Mph1103I ATGCAT 2 cut(s) 744, 1372
MroXI GAANNNNTTC 1 cut(s) 1388
MscI TGGCCA 1 cut(s) 704
MseI TTAA 7 cut(s) 183, 1077, 1247, 1514, 2049, 2418, 2691
MslI CAYNNNNRTG 4 cut(s) 926, 1004, 1068, 1709
Msp20I TGGCCA 1 cut(s) 704
MspA1I CMGCKG 1 cut(s) 2843
MspR9I CCNGG 5 cut(s) 364, 832, 1762, 2795, 2910
MteI GCGCNGCGC 1 cut(s) 423
Mva1269I GAATGC 5 cut(s) 604, 892, 907, 1816, 2110
MvaI CCWGG 1 cut(s) 2910
MvnI CGCG 1 cut(s) 422
NciI CCSGG 4 cut(s) 364, 832, 1762, 2795
NdeII GATC 5 cut(s) 1085, 2299, 2458, 2629, 2807
NlaIV GGNNCC 6 cut(s) 311, 807, 2190, 2452, 2728, 2793
NmuCI GTSAC 4 cut(s) 997, 1603, 1969, 2200
NsiI ATGCAT 2 cut(s) 744, 1372
NspI RCATGY 4 cut(s) 1370, 1735, 1935, 2816
OliI CACNNNNGTG 1 cut(s) 1004
PaeI GCATGC 2 cut(s) 1370, 1935
PaeR7I CTCGAG 1 cut(s) 2803
PceI AGGCCT 1 cut(s) 148
PcsI WCGNNNNNNNCGW 1 cut(s) 1002
PctI GAATGC 5 cut(s) 604, 892, 907, 1816, 2110
PdmI GAANNNNTTC 1 cut(s) 1388
PflFI GACNNNGTC 1 cut(s) 1601
PflMI CCANNNNNTGG 2 cut(s) 284, 1503
PinAI ACCGGT 2 cut(s) 533, 746
PkrI GCNGC 8 cut(s) 424, 987, 1473, 1937, 2534, 2543, 2839, 2842
PleI GAGTC 2 cut(s) 470, 1063
PpsI GAGTC 2 cut(s) 470, 1063
Ppu21I YACGTR 2 cut(s) 1225, 1906
PpuMI RGGWCCY 1 cut(s) 216
PshBI ATTAAT 1 cut(s) 2418
Psp124BI GAGCTC 1 cut(s) 342
Psp5II RGGWCCY 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 2908
PspEI GGTNACC 2 cut(s) 782, 2648
PspFI CCCAGC 1 cut(s) 2843
PspGI CCWGG 1 cut(s) 2908
PspN4I GGNNCC 6 cut(s) 311, 807, 2190, 2452, 2728, 2793
PspPI GGNCC 4 cut(s) 216, 1597, 2727, 2791
PspPPI RGGWCCY 1 cut(s) 216
PstI CTGCAG 2 cut(s) 294, 2534
PstNI CAGNNNCTG 3 cut(s) 219, 2261, 2843
PsuI RGATCY 3 cut(s) 2299, 2458, 2629
PsyI GACNNNGTC 1 cut(s) 1601
PvuII CAGCTG 1 cut(s) 2843
RsaI GTAC 7 cut(s) 171, 311, 876, 1223, 1229, 2273, 2907
RsaNI GTAC 7 cut(s) 170, 310, 875, 1222, 1228, 2272, 2906
RseI CAYNNNNRTG 4 cut(s) 926, 1004, 1068, 1709
SacI GAGCTC 1 cut(s) 342
SaqAI TTAA 7 cut(s) 183, 1077, 1247, 1514, 2049, 2418, 2691
SatI GCNGC 8 cut(s) 423, 986, 1472, 1936, 2533, 2542, 2838, 2841
Sau3AI GATC 5 cut(s) 1085, 2299, 2458, 2629, 2807
Sau96I GGNCC 4 cut(s) 216, 1597, 2727, 2791
SchI GAGTC 2 cut(s) 471, 1064
ScrFI CCNGG 5 cut(s) 364, 832, 1762, 2795, 2910
SduI GDGCHC 5 cut(s) 342, 698, 1533, 2455, 2683
SfaNI GCATC 7 cut(s) 1285, 1563, 1747, 2330, 2766, 2808, 2848
SfcI CTRYAG 3 cut(s) 290, 2530, 2731
Sfr274I CTCGAG 1 cut(s) 2803
SinI GGWCC 3 cut(s) 216, 1597, 2791
SlaI CTCGAG 1 cut(s) 2803
SmiMI CAYNNNNRTG 4 cut(s) 926, 1004, 1068, 1709
SmlI CTYRAG 3 cut(s) 142, 1337, 2803
SmoI CTYRAG 3 cut(s) 142, 1337, 2803
SnaBI TACGTA 1 cut(s) 1906
SphI GCATGC 2 cut(s) 1370, 1935
SseBI AGGCCT 1 cut(s) 148
SsiI CCGC 7 cut(s) 422, 1343, 1553, 1936, 2343, 2541, 2582
SspMI CTAG 5 cut(s) 855, 1601, 1626, 2034, 2456
SstI GAGCTC 1 cut(s) 342
StuI AGGCCT 1 cut(s) 148
StyD4I CCNGG 5 cut(s) 362, 830, 1760, 2793, 2908
TaaI ACNGT 6 cut(s) 709, 1745, 2067, 2206, 2429, 2444
TaiI ACGT 8 cut(s) 398, 556, 1227, 1514, 1769, 1908, 2590, 2751
TaqI TCGA 8 cut(s) 89, 483, 623, 791, 1170, 2550, 2607, 2804
TatI WGTACW 1 cut(s) 1227
TauI GCSGC 3 cut(s) 425, 1938, 2544
Tru1I TTAA 7 cut(s) 183, 1077, 1247, 1514, 2049, 2418, 2691
Tru9I TTAA 7 cut(s) 183, 1077, 1247, 1514, 2049, 2418, 2691
TscAI CASTG 4 cut(s) 712, 1153, 1541, 2688
TseFI GTSAC 4 cut(s) 997, 1603, 1969, 2200
TseI GCWGC 5 cut(s) 985, 1471, 2532, 2837, 2840
Tsp45I GTSAC 4 cut(s) 997, 1603, 1969, 2200
TspGWI ACGGA 6 cut(s) 98, 642, 950, 1000, 2153, 2386
TspRI CASTG 4 cut(s) 712, 1153, 1541, 2688
Tth111I GACNNNGTC 1 cut(s) 1601
Van91I CCANNNNNTGG 2 cut(s) 284, 1503
VneI GTGCAC 1 cut(s) 1529
VpaK11BI GGWCC 3 cut(s) 216, 1597, 2791
VspI ATTAAT 1 cut(s) 2418
XagI CCTNNNNNAGG 1 cut(s) 2657
XapI RAATTY 8 cut(s) 570, 676, 688, 1030, 1243, 1492, 1717, 1918
XceI RCATGY 4 cut(s) 1370, 1735, 1935, 2816
XhoI CTCGAG 1 cut(s) 2803
XmiI GTMKAC 1 cut(s) 351
XmnI GAANNNNTTC 1 cut(s) 1388
XspI CTAG 5 cut(s) 855, 1601, 1626, 2034, 2456
Zsp2I ATGCAT 2 cut(s) 744, 1372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.