Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012566

Physical Location & Seq

Genomic Coordinates Reverse (-)

44847457 .. 44848822

Gene Structure 1366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38933

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGCAAGTTTCAAGATTTGATGCGGATGCAGTCTCTGTTATTAGTATTCTTTCTGCTTGCTCCAAACTTGAGGCTGATATGTTGGGTAGGTCTGCCCATGCATTTAGTATAAGAAAGGGTATCCACTCAAACATCAATCTGTCCAATGCATTGTTGGCATTTTACTCTGATTGTCATCGTCTCTCTTATTCTATTACTTTATTTCACAAAATGCCTCTAAGGAATGGCATAACGTGGAATACATTAATTTCCAGTTGTGTGCACCATGGAGAAATGGACAGAGCAGTTGCCTTATACTACCAGATGCAGAAAGAGGGTTTCAAGTTGGACTTGGTCACCTTGACCAGTATACTCCCTAGTTGGAGTGACGAGGAAAACTTAGGGCAAGGAATGGCTTTTCATGGTTACGCTATAAAACTCGGGTTTGCTTCTGACATTTCTCTGCTTAACTCACTTATTAGCATGTACTTTAACTATGGAGACCTTGATGCTGGGAGGTTGGTTTTCGAAACCATGCCCAAAAGAACTGTGGTGTCTTGGAATGCTATGATGACTGGCCTCAAGAATCATAATTTACAGAATGAGGTTATGGCCGTCTTCAGTCAAATGATAAAGGATGATCAGAGACCAAATTATGTAACTTTGCTAAATTTATTGCCTACATGCTACTCCCAGTTACAGGGTAAGTCTATTCATGCTCTGGCAGTTAGAACAAGTATTCTCCATGAAACCCCTCTTCTTTCATCACTCATGTTTATGTATGCCAGATTTGACAACCATGATTCATGTATCTTACTGTTTAAAACGAGAAAAATGGAGGATATTTCTTTGTGGAATGCCATTATGTCGGTGCAAATACAAGCGAAAAGTAGCGAGAATGCAGTGGGATTTTTCAATAGCTTGCTCCAGATGAAATTGGAACCAGACAATTTGACCCTTCTGAATTTGGTCTCTTCATGTGCTCAGCTGAATAGCCTCACTCTTGCTAATTCTGTAATGGGTTACATCATTCGCAAGGGCTTTGACAAAGATCTGGTTATTAGTAATGCACTTAACTCCTCAGCATTGCAAATGTGGTTGGTTGGTTATCCAGATACGGTAAGGGTTTTCATGAAGAAGCAAATTCAGTTCTTGGGTAGCCATAAGAAGGTTCAAGGTGTGAGAAAATCTACCACAGAAGCTCCGGGTGTTGATGTTGTTAGGCATAAGAAGACAAAGAGTGTTGATGGCACTGCTCTGATGGACGCTATTTTGGGATGGCAAGGGAGGATCCAAAGGGGAATCTTCTGCAGTGGTGGTTTGAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 WEMBL

Protein Analysis

436

Amino Acids

48.74

Weight (kDa)

9.11

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	77 - 118	1.2e-09	PPR repeat family
PPR	PF01535	77 - 107	4.5e-08	PPR repeat
FACT-Spt16_Nlob	PF14826	351 - 418	1.6e-09	FACT complex subunit SPT16 N-terminal lobe domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012566)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15970
malus_domestica	MD02G1171400.v1.1
prunus_persica	Prupe.7G134000_v2.0.a1
pyrus_communis	pycom02g13810
rosa_chinensis	RchiOBHm_Chr2g0105571 RchiOBHm_Chr4g0419421
rosa_laevigata	RLG00000009251 RLG00000017437 RLG00000025539
rosa_multiflora	Rmu_co7991258.1_g000001 Rmu_sc0001051.1_g000009 Rmu_sc0006395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00138120
rosa_rugosa	Rorug02G0128300
rosa_samantha	Rh2AG179900 Rh2BG189000 Rh2CG184200 Rh2DG185700
rosa_wichuraiana	Rw2G014070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	349
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	2 cut(s)	1264, 1277
AcoI	YGGCCR	1 cut(s)	591
AcsI	RAATTY	3 cut(s)	649, 943, 1122
AcuI	CTGAAG	1 cut(s)	583
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	2 cut(s)	679, 1147
AgsI	TTSAA	4 cut(s)	12, 322, 895, 1154
AluBI	AGCT	4 cut(s)	900, 967, 1181, 1308
AluI	AGCT	4 cut(s)	900, 967, 1181, 1308
Alw21I	GWGCWC	2 cut(s)	264, 964
Alw26I	GTCTC	5 cut(s)	37, 185, 474, 619, 955
Alw44I	GTGCAC	1 cut(s)	260
AlwI	GGATC	2 cut(s)	1264, 1277
AlwNI	CAGNNNCTG	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	419
AoxI	GGCC	2 cut(s)	556, 591
ApaLI	GTGCAC	1 cut(s)	260
ApoI	RAATTY	3 cut(s)	649, 943, 1122
AseI	ATTAAT	1 cut(s)	245
AsuC2I	CCSGG	1 cut(s)	1185
AsuHPI	GGTGA	1 cut(s)	328
AsuII	TTCGAA	1 cut(s)	507
AvaI	CYCGRG	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	264
BamHI	GGATCC	1 cut(s)	1269
BbsI	GAAGAC	2 cut(s)	589, 1217
Bbv12I	GWGCWC	2 cut(s)	264, 964
BbvCI	CCTCAGC	1 cut(s)	1060
BccI	CCATC	3 cut(s)	1220, 1234, 1251
BceAI	ACGGC	1 cut(s)	578
BciVI	GTATCC	1 cut(s)	131
BclI	TGATCA	1 cut(s)	619
BcnI	CCSGG	1 cut(s)	1185
BcoDI	GTCTC	5 cut(s)	37, 185, 474, 619, 955
BfaI	CTAG	1 cut(s)	357
BfmI	CTRYAG	1 cut(s)	1288
BfuI	GTATCC	1 cut(s)	131
BglII	AGATCT	1 cut(s)	1030
BlpI	GCTNAGC	1 cut(s)	963
Bme1390I	CCNGG	1 cut(s)	1185
BmeT110I	CYCGRG	1 cut(s)	419
BmiI	GGNNCC	2 cut(s)	921, 1271
BmrFI	CCNGG	1 cut(s)	1185
BmrI	ACTGGG	1 cut(s)	667
BmsI	GCATC	4 cut(s)	10, 16, 294, 478
BmuI	ACTGGG	1 cut(s)	667
BpiI	GAAGAC	2 cut(s)	589, 1217
BpmI	CTGGAG	1 cut(s)	890
Bpu10I	CCTNAGC	1 cut(s)	1060
Bpu1102I	GCTNAGC	1 cut(s)	963
Bpu14I	TTCGAA	1 cut(s)	507
BpuEI	CTTGAG	2 cut(s)	89, 545
BpuMI	CCSGG	1 cut(s)	1185
BsaBI	GATNNNNATC	1 cut(s)	174
BsaI	GGTCTC	3 cut(s)	474, 619, 955
BsaJI	CCNNGG	1 cut(s)	265
BsaXI	ACNNNNNCTCC	2 cut(s)	1165, 1195
Bsc4I	CCNNNNNNNGG	2 cut(s)	679, 1147
Bse1I	ACTGG	4 cut(s)	252, 345, 559, 673
Bse3DI	GCAATG	1 cut(s)	1064
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	3 cut(s)	31, 622, 1262
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	679, 1147
BseMI	GCAATG	1 cut(s)	1064
BseMII	CTCAG	2 cut(s)	977, 1074
BseNI	ACTGG	4 cut(s)	252, 345, 559, 673
BseRI	GAGGAG	1 cut(s)	1048
BseSI	GKGCMC	1 cut(s)	264
BseYI	CCCAGC	1 cut(s)	491
BshFI	GGCC	2 cut(s)	558, 593
BsiHKAI	GWGCWC	2 cut(s)	264, 964
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	1184
BslI	CCNNNNNNNGG	2 cut(s)	679, 1147
BsmAI	GTCTC	5 cut(s)	37, 185, 474, 619, 955
BsmBI	CGTCTC	1 cut(s)	185
BsmI	GAATGC	3 cut(s)	547, 841, 883
BsnI	GGCC	2 cut(s)	558, 593
Bso31I	GGTCTC	3 cut(s)	474, 619, 955
BsoBI	CYCGRG	1 cut(s)	419
Bsp119I	TTCGAA	1 cut(s)	507
Bsp1286I	GDGCHC	2 cut(s)	264, 964
Bsp143I	GATC	3 cut(s)	619, 1030, 1269
Bsp1720I	GCTNAGC	1 cut(s)	963
Bsp19I	CCATGG	1 cut(s)	265
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	2 cut(s)	558, 593
BspCNI	CTCAG	2 cut(s)	976, 1073
BspHI	TCATGA	1 cut(s)	1110
BspLI	GGNNCC	2 cut(s)	921, 1271
BspMAI	CTGCAG	1 cut(s)	1292
BspPI	GGATC	2 cut(s)	1264, 1277
BspT104I	TTCGAA	1 cut(s)	507
BspTNI	GGTCTC	3 cut(s)	474, 619, 955
BsrDI	GCAATG	1 cut(s)	1064
BsrI	ACTGG	4 cut(s)	252, 345, 559, 673
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	3 cut(s)	619, 1030, 1269
BssNAI	GTATAC	1 cut(s)	350
BssT1I	CCWWGG	1 cut(s)	265
Bst1107I	GTATAC	1 cut(s)	350
Bst4CI	ACNGT	3 cut(s)	529, 798, 1099
Bst6I	CTCTTC	2 cut(s)	741, 958
BstBI	TTCGAA	1 cut(s)	507
BstC8I	GCNNGC	2 cut(s)	58, 902
BstDEI	CTNAG	4 cut(s)	218, 379, 963, 1060
BstDSI	CCRYGG	1 cut(s)	265
BstEII	GGTNACC	1 cut(s)	334
BstF5I	GGATG	3 cut(s)	31, 622, 1262
BstKTI	GATC	3 cut(s)	622, 1033, 1272
BstMAI	GTCTC	5 cut(s)	37, 185, 474, 619, 955
BstMBI	GATC	3 cut(s)	619, 1030, 1269
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNSI	RCATGY	2 cut(s)	466, 666
BstPI	GGTNACC	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	1183
BstSFI	CTRYAG	1 cut(s)	1288
BstSLI	GKGCMC	1 cut(s)	264
BstV2I	GAAGAC	2 cut(s)	589, 1217
BstX2I	RGATCY	2 cut(s)	1030, 1269
BstYI	RGATCY	2 cut(s)	1030, 1269
BstZ17I	GTATAC	1 cut(s)	350
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	2 cut(s)	558, 593
BtgI	CCRYGG	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	31, 622, 1262
BtsI	GCAGTG	3 cut(s)	888, 1230, 1297
BtsIMutI	CAGTG	3 cut(s)	888, 1230, 1297
Cac8I	GCNNGC	2 cut(s)	58, 902
CaiI	CAGNNNCTG	1 cut(s)	35
CciI	TCATGA	1 cut(s)	1110
CseI	GACGC	1 cut(s)	1253
Csp6I	GTAC	1 cut(s)	466
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	4 cut(s)	218, 379, 963, 1060
DpnI	GATC	3 cut(s)	621, 1032, 1271
DpnII	GATC	3 cut(s)	619, 1030, 1269
DraI	TTTAAA	1 cut(s)	802
EaeI	YGGCCR	1 cut(s)	591
Eam1104I	CTCTTC	2 cut(s)	741, 958
EarI	CTCTTC	2 cut(s)	741, 958
Eco130I	CCWWGG	1 cut(s)	265
Eco31I	GGTCTC	3 cut(s)	474, 619, 955
Eco57I	CTGAAG	1 cut(s)	583
Eco88I	CYCGRG	1 cut(s)	419
Eco91I	GGTNACC	1 cut(s)	334
EcoO65I	GGTNACC	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	265
EcoT22I	ATGCAT	2 cut(s)	103, 151
ErhI	CCWWGG	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	185
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FbaI	TGATCA	1 cut(s)	619
FblI	GTMKAC	1 cut(s)	349
FokI	GGATG	3 cut(s)	38, 629, 1269
FspBI	CTAG	1 cut(s)	357
GsaI	CCCAGC	1 cut(s)	495
GsuI	CTGGAG	1 cut(s)	890
HaeIII	GGCC	2 cut(s)	558, 593
HapII	CCGG	1 cut(s)	1184
HgaI	GACGC	1 cut(s)	1253
HinfI	GANTC	3 cut(s)	565, 782, 1281
HpaII	CCGG	1 cut(s)	1184
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	2 cut(s)	262, 350
Hpy188I	TCNGA	5 cut(s)	169, 433, 624, 942, 1239
Hpy188III	TCNNGA	5 cut(s)	12, 562, 907, 1091, 1111
Hpy8I	GTNNAC	2 cut(s)	262, 350
HpyAV	CCTTC	2 cut(s)	947, 1141
HpyCH4III	ACNGT	3 cut(s)	529, 798, 1099
HpyCH4IV	ACGT	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	4 cut(s)	218, 379, 963, 1060
HpySE526I	ACGT	1 cut(s)	233
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	3 cut(s)	619, 1030, 1269
LmnI	GCTCC	3 cut(s)	65, 909, 1186
LweI	GCATC	4 cut(s)	10, 16, 294, 478
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	6 cut(s)	334, 365, 404, 637, 675, 1001
MalI	GATC	3 cut(s)	621, 1032, 1271
MboI	GATC	3 cut(s)	619, 1030, 1269
MboII	GAAGA	6 cut(s)	589, 728, 945, 1126, 1222, 1276
MflI	RGATCY	2 cut(s)	1030, 1269
MhlI	GDGCHC	2 cut(s)	264, 964
MluCI	AATT	9 cut(s)	246, 571, 631, 649, 914, 928, 943, 988, 1122
MmeI	TCCRAC	2 cut(s)	306, 341
Mph1103I	ATGCAT	2 cut(s)	103, 151
MseI	TTAA	5 cut(s)	245, 447, 471, 801, 1053
MslI	CAYNNNNRTG	1 cut(s)	755
MspA1I	CMGCKG	1 cut(s)	967
MspI	CCGG	1 cut(s)	1184
MspR9I	CCNGG	1 cut(s)	1185
Mva1269I	GAATGC	3 cut(s)	547, 841, 883
MwoI	GCNNNNNNNGC	1 cut(s)	155
NciI	CCSGG	1 cut(s)	1185
NcoI	CCATGG	1 cut(s)	265
NdeII	GATC	3 cut(s)	619, 1030, 1269
NlaIV	GGNNCC	2 cut(s)	921, 1271
NmuCI	GTSAC	2 cut(s)	334, 365
NsiI	ATGCAT	2 cut(s)	103, 151
NspI	RCATGY	2 cut(s)	466, 666
NspV	TTCGAA	1 cut(s)	507
PagI	TCATGA	1 cut(s)	1110
PctI	GAATGC	3 cut(s)	547, 841, 883
PfeI	GAWTC	3 cut(s)	565, 782, 1281
PflFI	GACNNNGTC	1 cut(s)	332
PshBI	ATTAAT	1 cut(s)	245
PspEI	GGTNACC	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	491
PspN4I	GGNNCC	2 cut(s)	921, 1271
PstI	CTGCAG	1 cut(s)	1292
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	1030, 1269
PsyI	GACNNNGTC	1 cut(s)	332
PvuII	CAGCTG	1 cut(s)	967
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	755
SaqAI	TTAA	5 cut(s)	245, 447, 471, 801, 1053
Sau3AI	GATC	3 cut(s)	619, 1030, 1269
ScrFI	CCNGG	1 cut(s)	1185
SduI	GDGCHC	2 cut(s)	264, 964
SfaNI	GCATC	4 cut(s)	10, 16, 294, 478
SfcI	CTRYAG	1 cut(s)	1288
SfuI	TTCGAA	1 cut(s)	507
SmiMI	CAYNNNNRTG	1 cut(s)	755
SmlI	CTYRAG	2 cut(s)	68, 560
SmoI	CTYRAG	2 cut(s)	68, 560
Sse9I	AATT	9 cut(s)	246, 571, 631, 649, 914, 928, 943, 988, 1122
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	1 cut(s)	1183
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	3 cut(s)	529, 798, 1099
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	1 cut(s)	507
TasI	AATT	9 cut(s)	246, 571, 631, 649, 914, 928, 943, 988, 1122
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	3 cut(s)	565, 782, 1281
Tru1I	TTAA	5 cut(s)	245, 447, 471, 801, 1053
Tru9I	TTAA	5 cut(s)	245, 447, 471, 801, 1053
TscAI	CASTG	3 cut(s)	888, 1237, 1297
TseFI	GTSAC	2 cut(s)	334, 365
Tsp45I	GTSAC	2 cut(s)	334, 365
TspDTI	ATGAA	9 cut(s)	389, 683, 732, 741, 774, 926, 945, 1099, 1127
TspRI	CASTG	3 cut(s)	888, 1237, 1297
Tth111I	GACNNNGTC	1 cut(s)	332
VneI	GTGCAC	1 cut(s)	260
VspI	ATTAAT	1 cut(s)	245
XapI	RAATTY	3 cut(s)	649, 943, 1122
XceI	RCATGY	2 cut(s)	466, 666
XcmI	CCANNNNNNNNNTGG	2 cut(s)	151, 526
XmiI	GTMKAC	1 cut(s)	349
XspI	CTAG	1 cut(s)	357
Zsp2I	ATGCAT	2 cut(s)	103, 151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.