Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0012566

Physical Location & Seq

Genomic Coordinates Forward (+)

49769690 .. 49770996

Gene Structure 1307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009251

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCTGGCTGTAGAGGTAGAGATCAGGATGTCTAATGAATCTACATATAGTTTCTCTCGTGAACCAATGATGGTGGAGGACATTCCCAGGGTTGGCGGCGGTTTTCAAACTAAGAGATCACTCTCGTCGGGTGGCGACCTTGGCATAGGCCTTGCCTATGCTGCGTGGTTTGTTGTTGGACGGGGATTGATGCTATCGTTCAGGGAGCTCTTGAGTGGTGTTGCTCAGAGTTGCAAGCTCGGCCCTGGCATAGGCCTCGTCTACGTCACGTGGTCTGCTGTCGGATGGGGATTGATGCTATCGTTTGGGGCGCTCTTGAGGGGTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

11.72

Weight (kDa)

7.9

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012566)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15970
malus_domestica	MD02G1171400.v1.1
prunus_persica	Prupe.7G134000_v2.0.a1
pyrus_communis	pycom02g13810
rosa_chinensis	RchiOBHm_Chr2g0105571 RchiOBHm_Chr4g0419421
rosa_laevigata	RLG00000009251 RLG00000017437 RLG00000025539
rosa_multiflora	Rmu_co7991258.1_g000001 Rmu_sc0001051.1_g000009 Rmu_sc0006395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00138120
rosa_rugosa	Rorug02G0128300
rosa_samantha	Rh2AG179900 Rh2BG189000 Rh2CG184200 Rh2DG185700
rosa_wichuraiana	Rw2G014070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	261
AciI	CCGC	2 cut(s)	96, 99
AcvI	CACGTG	1 cut(s)	270
AfiI	CCNNNNNNNGG	2 cut(s)	92, 251
AgsI	TTSAA	1 cut(s)	107
AjnI	CCWGG	2 cut(s)	86, 244
AluBI	AGCT	2 cut(s)	208, 238
AluI	AGCT	2 cut(s)	208, 238
Alw21I	GWGCWC	1 cut(s)	210
AoxI	GGCC	3 cut(s)	148, 241, 253
ApeKI	GCWGC	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	210
BauI	CACGAG	1 cut(s)	57
BbrPI	CACGTG	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	2 cut(s)	64, 279
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	2 cut(s)	88, 246
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	314
BisI	GCNGC	2 cut(s)	97, 162
BlsI	GCNGC	2 cut(s)	98, 163
Bme1390I	CCNGG	2 cut(s)	88, 246
BmgT120I	GGNCC	1 cut(s)	242
BmrFI	CCNGG	2 cut(s)	88, 246
BmsI	GCATC	2 cut(s)	180, 285
BpuEI	CTTGAG	1 cut(s)	232
BsaAI	YACGTR	1 cut(s)	270
BsaJI	CCNNGG	4 cut(s)	86, 87, 139, 244
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 251
BseBI	CCWGG	2 cut(s)	88, 246
BseDI	CCNNGG	4 cut(s)	86, 87, 139, 244
BseGI	GGATG	2 cut(s)	33, 290
BseLI	CCNNNNNNNGG	2 cut(s)	92, 251
BseMII	CTCAG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	3 cut(s)	150, 243, 255
BsiHKAI	GWGCWC	1 cut(s)	210
BslI	CCNNNNNNNGG	2 cut(s)	92, 251
BsnI	GGCC	3 cut(s)	150, 243, 255
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	21, 116
BspACI	CCGC	2 cut(s)	96, 99
BspANI	GGCC	3 cut(s)	150, 243, 255
BspCNI	CTCAG	1 cut(s)	238
BssECI	CCNNGG	4 cut(s)	86, 87, 139, 244
BssMI	GATC	2 cut(s)	21, 116
BssSI	CACGAG	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	139
Bst2BI	CACGAG	1 cut(s)	57
Bst2UI	CCWGG	2 cut(s)	88, 246
BstBAI	YACGTR	1 cut(s)	270
BstC8I	GCNNGC	2 cut(s)	6, 236
BstDEI	CTNAG	2 cut(s)	111, 225
BstENI	CCTNNNNNAGG	1 cut(s)	249
BstF5I	GGATG	2 cut(s)	33, 290
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	2 cut(s)	24, 119
BstMBI	GATC	2 cut(s)	21, 116
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 161, 240
BstNI	CCWGG	2 cut(s)	88, 246
BstSCI	CCNGG	2 cut(s)	86, 244
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	148
BsuRI	GGCC	3 cut(s)	150, 243, 255
BtsCI	GGATG	2 cut(s)	33, 290
Cac8I	GCNNGC	2 cut(s)	6, 236
CfoI	GCGC	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	242
CspCI	CAANNNNNGTGG	2 cut(s)	54, 89
CviJI	RGCY	6 cut(s)	8, 150, 208, 238, 243, 255
CviKI_1	RGCY	6 cut(s)	8, 150, 208, 238, 243, 255
DdeI	CTNAG	2 cut(s)	111, 225
DpnI	GATC	2 cut(s)	23, 118
DpnII	GATC	2 cut(s)	21, 116
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	139
Eco147I	AGGCCT	2 cut(s)	150, 255
Eco24I	GRGCYC	1 cut(s)	210
Eco53kI	GAGCTC	1 cut(s)	208
Eco72I	CACGTG	1 cut(s)	270
EcoICRI	GAGCTC	1 cut(s)	208
EcoNI	CCTNNNNNAGG	1 cut(s)	249
EcoRII	CCWGG	2 cut(s)	86, 244
EcoT14I	CCWWGG	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	139
FaiI	YATR	5 cut(s)	46, 48, 146, 159, 251
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	2 cut(s)	97, 162
FokI	GGATG	2 cut(s)	40, 297
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	2 cut(s)	97, 162
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	2 cut(s)	97, 162
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	3 cut(s)	150, 243, 255
HhaI	GCGC	1 cut(s)	313
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HinfI	GANTC	1 cut(s)	38
Hpy166II	GTNNAC	2 cut(s)	62, 262
Hpy188I	TCNGA	2 cut(s)	228, 284
Hpy188III	TCNNGA	4 cut(s)	25, 59, 211, 316
Hpy8I	GTNNAC	2 cut(s)	62, 262
Hpy99I	CGWCG	1 cut(s)	130
HpyCH4IV	ACGT	2 cut(s)	264, 269
HpyCH4V	TGCA	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 161, 240
HpyF3I	CTNAG	2 cut(s)	111, 225
HpySE526I	ACGT	2 cut(s)	264, 269
HspAI	GCGC	1 cut(s)	311
Kzo9I	GATC	2 cut(s)	21, 116
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	6 cut(s)	10, 73, 100, 187, 231, 258
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	2 cut(s)	180, 285
MaeII	ACGT	2 cut(s)	264, 269
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	2 cut(s)	23, 118
MboI	GATC	2 cut(s)	21, 116
MhlI	GDGCHC	1 cut(s)	210
MmeI	TCCRAC	2 cut(s)	157, 262
MnlI	CCTC	4 cut(s)	7, 70, 266, 312
MspR9I	CCNGG	2 cut(s)	88, 246
MvaI	CCWGG	2 cut(s)	88, 246
MwoI	GCNNNNNNNGC	3 cut(s)	141, 161, 240
NdeII	GATC	2 cut(s)	21, 116
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	265
PasI	CCCWGGG	1 cut(s)	87
PceI	AGGCCT	2 cut(s)	150, 255
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	98, 163
PmaCI	CACGTG	1 cut(s)	270
PmlI	CACGTG	1 cut(s)	270
Ppu21I	YACGTR	1 cut(s)	270
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	86, 244
PspCI	CACGTG	1 cut(s)	270
PspGI	CCWGG	2 cut(s)	86, 244
PspPI	GGNCC	1 cut(s)	242
SacI	GAGCTC	1 cut(s)	210
SatI	GCNGC	2 cut(s)	97, 162
Sau3AI	GATC	2 cut(s)	21, 116
Sau96I	GGNCC	1 cut(s)	242
ScrFI	CCNGG	2 cut(s)	88, 246
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	6 cut(s)	18, 141, 210, 240, 267, 272
SfaNI	GCATC	2 cut(s)	180, 285
SfcI	CTRYAG	1 cut(s)	9
SmlI	CTYRAG	2 cut(s)	211, 316
SmoI	CTYRAG	2 cut(s)	211, 316
SseBI	AGGCCT	2 cut(s)	150, 255
SsiI	CCGC	2 cut(s)	96, 99
SstI	GAGCTC	1 cut(s)	210
StuI	AGGCCT	2 cut(s)	150, 255
StyD4I	CCNGG	2 cut(s)	86, 244
StyI	CCWWGG	1 cut(s)	139
TaiI	ACGT	2 cut(s)	267, 272
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	51
XagI	CCTNNNNNAGG	1 cut(s)	249
XmiI	GTMKAC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.