Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012566

Physical Location & Seq

Genomic Coordinates Forward (+)

76213564 .. 76214235

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGGTTACATCATTCGCAAGGGCTTTGACAAAGATCTGGTTATTAGTAATGCACTAATAGATTTGCATTCACGATGTGGAAACATATGCATTGCGAGAAAGCTGTTTGATGGGTTGGTCAAGAGAGATGCTGTGTCTTGGAGTGTGGTGATTAATGGATATGGCTTGAATGGGAATGGCGAAGCTGCCCTGGATCTTTTCTTGCAGATGAAGCTATCAGGGATATCGCCTAATGGGATTACTTATTTAAGTGTTTTATCAGCCTGCAGCCATTCTGGATTGGTTGAGCAAGGCCGCGCCGTATTCAAATCTATGGCAGAACATGGGATAACACGCCAAATGAAGCACTATGCTTGTATGGTGGACCTTCTAGGAAGAACGGGTAATTTGACTGAGGCTTATGACATTGTTCGGGAACTACCCTGTAAACCTTCAACAAGCTTACTTGAGTCTCTGCTGGGTGCTTGTAGAATTCATGGGAACGTTGAACTTGGACAGAAAATTGGTGGGTTGCTCTCTGAATTGGACCCTGAAAATTCAAGACCACATGTAATGCTTCATAATATTTATGCCGCAGCTGGGAGATGGACTGATGCTGGTAGAGTAAGGTCTAGGATTGAAGAGAGAAGTTTGAGAAAAGTTCCTGGTTTTAGTCTTCTAATGGGACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 WEMBL

Protein Analysis

223

Amino Acids

24.39

Weight (kDa)

8.93

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	43 - 90	3e-11	PPR repeat family
PPR	PF01535	45 - 75	4e-07	PPR repeat
E_motif	PF20431	159 - 218	4e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012566)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15970
malus_domestica	MD02G1171400.v1.1
prunus_persica	Prupe.7G134000_v2.0.a1
pyrus_communis	pycom02g13810
rosa_chinensis	RchiOBHm_Chr2g0105571 RchiOBHm_Chr4g0419421
rosa_laevigata	RLG00000009251 RLG00000017437 RLG00000025539
rosa_multiflora	Rmu_co7991258.1_g000001 Rmu_sc0001051.1_g000009 Rmu_sc0006395.1_g000003
rosa_roxburghii	Rroxscaffold_2G00138120
rosa_rugosa	Rorug02G0128300
rosa_samantha	Rh2AG179900 Rh2BG189000 Rh2CG184200 Rh2DG185700
rosa_wichuraiana	Rw2G014070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	297
AciI	CCGC	2 cut(s)	295, 573
AclI	AACGTT	1 cut(s)	483
AclWI	GGATC	1 cut(s)	201
AcsI	RAATTY	2 cut(s)	471, 535
AdeI	CACNNNGTG	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	579
AflIII	ACRYGT	1 cut(s)	547
AgsI	TTSAA	6 cut(s)	169, 307, 435, 488, 540, 620
AjnI	CCWGG	2 cut(s)	189, 643
AluBI	AGCT	5 cut(s)	103, 185, 214, 441, 578
AluI	AGCT	5 cut(s)	103, 185, 214, 441, 578
Alw26I	GTCTC	1 cut(s)	456
AlwI	GGATC	1 cut(s)	201
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	3 cut(s)	185, 267, 575
ApoI	RAATTY	2 cut(s)	471, 535
AseI	ATTAAT	1 cut(s)	153
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	364, 526
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	2 cut(s)	364, 526
BbsI	GAAGAC	1 cut(s)	647
BbvI	GCAGC	3 cut(s)	172, 279, 587
BccI	CCATC	2 cut(s)	104, 579
BceAI	ACGGC	1 cut(s)	284
BciT130I	CCWGG	2 cut(s)	191, 645
BcoDI	GTCTC	1 cut(s)	456
BfaI	CTAG	2 cut(s)	371, 612
BfmI	CTRYAG	1 cut(s)	265
BglII	AGATCT	1 cut(s)	34
BisI	GCNGC	5 cut(s)	186, 268, 295, 573, 576
BlsI	GCNGC	5 cut(s)	187, 269, 296, 574, 577
Bme1390I	CCNGG	2 cut(s)	191, 645
Bme18I	GGWCC	2 cut(s)	364, 526
BmgT120I	GGNCC	2 cut(s)	364, 526
BmiI	GGNNCC	1 cut(s)	528
BmrFI	CCNGG	2 cut(s)	191, 645
BmsI	GCATC	2 cut(s)	118, 583
BpiI	GAAGAC	1 cut(s)	647
BpuEI	CTTGAG	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	1 cut(s)	579
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	2 cut(s)	191, 645
BseDI	CCNNGG	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	579
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	384
BseXI	GCAGC	3 cut(s)	172, 279, 587
BseYI	CCCAGC	2 cut(s)	457, 578
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	579
BsmAI	GTCTC	1 cut(s)	456
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	34, 193
BspACI	CCGC	2 cut(s)	295, 573
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	385
BspFNI	CGCG	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	528
BspMAI	CTGCAG	1 cut(s)	269
BspPI	GGATC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	2 cut(s)	34, 193
Bst2UI	CCWGG	2 cut(s)	191, 645
Bst6I	CTCTTC	1 cut(s)	615
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	1 cut(s)	393
BstFNI	CGCG	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	2 cut(s)	37, 196
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	2 cut(s)	34, 193
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNI	CCWGG	2 cut(s)	191, 645
BstNSI	RCATGY	1 cut(s)	551
BstSCI	CCNGG	2 cut(s)	189, 643
BstSFI	CTRYAG	1 cut(s)	265
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	3 cut(s)	172, 279, 587
BstV2I	GAAGAC	1 cut(s)	647
BstX2I	RGATCY	2 cut(s)	34, 193
BstYI	RGATCY	2 cut(s)	34, 193
BsuRI	GGCC	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	265
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	364, 526
CviAII	CATG	3 cut(s)	323, 476, 548
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	2 cut(s)	36, 195
DpnII	GATC	2 cut(s)	34, 193
DraIII	CACNNNGTG	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
Eco32I	GATATC	1 cut(s)	225
Eco47I	GGWCC	2 cut(s)	364, 526
EcoRI	GAATTC	1 cut(s)	471
EcoRII	CCWGG	2 cut(s)	189, 643
EcoRV	GATATC	1 cut(s)	225
EcoT22I	ATGCAT	1 cut(s)	92
FaeI	CATG	3 cut(s)	326, 479, 551
FatI	CATG	3 cut(s)	322, 475, 547
FauNDI	CATATG	1 cut(s)	86
Fnu4HI	GCNGC	5 cut(s)	186, 268, 295, 573, 576
Fsp4HI	GCNGC	5 cut(s)	186, 268, 295, 573, 576
FspBI	CTAG	2 cut(s)	371, 612
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	5 cut(s)	186, 268, 295, 573, 576
GsaI	CCCAGC	2 cut(s)	461, 582
HaeIII	GGCC	1 cut(s)	294
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	3 cut(s)	326, 479, 551
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	439
HinfI	GANTC	1 cut(s)	449
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	2 cut(s)	364, 428
Hpy188I	TCNGA	1 cut(s)	520
Hpy188III	TCNNGA	5 cut(s)	72, 121, 276, 413, 540
Hpy8I	GTNNAC	2 cut(s)	364, 428
HpyAV	CCTTC	2 cut(s)	377, 441
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	5 cut(s)	53, 67, 90, 205, 267
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	3 cut(s)	326, 479, 551
HspAI	GCGC	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	34, 193
Lsp1109I	GCAGC	3 cut(s)	172, 279, 587
LweI	GCATC	2 cut(s)	118, 583
MaeI	CTAG	2 cut(s)	371, 612
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	2 cut(s)	36, 195
MboI	GATC	2 cut(s)	34, 193
MboII	GAAGA	3 cut(s)	387, 632, 647
MflI	RGATCY	2 cut(s)	34, 193
MluCI	AATT	5 cut(s)	385, 471, 501, 521, 535
MlyI	GAGTC	1 cut(s)	458
MnlI	CCTC	1 cut(s)	388
Mph1103I	ATGCAT	1 cut(s)	92
MseI	TTAA	3 cut(s)	153, 248, 670
MspA1I	CMGCKG	1 cut(s)	578
MspR9I	CCNGG	2 cut(s)	191, 645
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	2 cut(s)	191, 645
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	211
NdeI	CATATG	1 cut(s)	86
NdeII	GATC	2 cut(s)	34, 193
NlaIII	CATG	3 cut(s)	326, 479, 551
NlaIV	GGNNCC	1 cut(s)	528
NsiI	ATGCAT	1 cut(s)	92
NspI	RCATGY	1 cut(s)	551
PciI	ACATGT	1 cut(s)	547
PctI	GAATGC	1 cut(s)	67
PkrI	GCNGC	5 cut(s)	187, 269, 296, 574, 577
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PscI	ACATGT	1 cut(s)	547
PshBI	ATTAAT	1 cut(s)	153
Psp1406I	AACGTT	1 cut(s)	483
Psp6I	CCWGG	2 cut(s)	189, 643
PspFI	CCCAGC	2 cut(s)	457, 578
PspGI	CCWGG	2 cut(s)	189, 643
PspN4I	GGNNCC	1 cut(s)	528
PspPI	GGNCC	2 cut(s)	364, 526
PstI	CTGCAG	1 cut(s)	269
PsuI	RGATCY	2 cut(s)	34, 193
PvuII	CAGCTG	1 cut(s)	578
SaqAI	TTAA	3 cut(s)	153, 248, 670
SatI	GCNGC	5 cut(s)	186, 268, 295, 573, 576
Sau3AI	GATC	2 cut(s)	34, 193
Sau96I	GGNCC	2 cut(s)	364, 526
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	2 cut(s)	191, 645
SetI	ASST	9 cut(s)	105, 187, 216, 369, 433, 443, 486, 580, 611
SfaNI	GCATC	2 cut(s)	118, 583
SfcI	CTRYAG	1 cut(s)	265
SinI	GGWCC	2 cut(s)	364, 526
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	5 cut(s)	385, 471, 501, 521, 535
SsiI	CCGC	2 cut(s)	295, 573
SspI	AATATT	1 cut(s)	565
SspMI	CTAG	2 cut(s)	371, 612
StyD4I	CCNGG	2 cut(s)	189, 643
TaiI	ACGT	1 cut(s)	486
TasI	AATT	5 cut(s)	385, 471, 501, 521, 535
TauI	GCSGC	2 cut(s)	297, 575
Tru1I	TTAA	3 cut(s)	153, 248, 670
Tru9I	TTAA	3 cut(s)	153, 248, 670
TseI	GCWGC	3 cut(s)	185, 267, 575
TspDTI	ATGAA	4 cut(s)	224, 356, 464, 548
VpaK11BI	GGWCC	2 cut(s)	364, 526
VspI	ATTAAT	1 cut(s)	153
XapI	RAATTY	2 cut(s)	471, 535
XceI	RCATGY	1 cut(s)	551
XspI	CTAG	2 cut(s)	371, 612
Zsp2I	ATGCAT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.