Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g15970 |
| malus_domestica | MD02G1171400.v1.1 |
| prunus_persica | Prupe.7G134000_v2.0.a1 |
| pyrus_communis | pycom02g13810 |
| rosa_chinensis | RchiOBHm_Chr2g0105571 RchiOBHm_Chr4g0419421 |
| rosa_laevigata | RLG00000009251 RLG00000017437 RLG00000025539 |
| rosa_multiflora | Rmu_co7991258.1_g000001 Rmu_sc0001051.1_g000009 Rmu_sc0006395.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00138120 |
| rosa_rugosa | Rorug02G0128300 |
| rosa_samantha | Rh2AG179900 Rh2BG189000 Rh2CG184200 Rh2DG185700 |
| rosa_wichuraiana | Rw2G014070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 312 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 287, 1506 |
| AciI | CCGC | 1 cut(s) | 1556 |
| AcsI | RAATTY | 7 cut(s) | 361, 573, 691, 1033, 1207, 1921, 1968 |
| AcuI | CTGAAG | 1 cut(s) | 2077 |
| AcvI | CACGTG | 1 cut(s) | 557 |
| AcyI | GRCGYC | 1 cut(s) | 1181 |
| AfaI | GTAC | 4 cut(s) | 830, 879, 1226, 1232 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 287, 1506 |
| AflIII | ACRYGT | 2 cut(s) | 192, 1227 |
| AgsI | TTSAA | 8 cut(s) | 84, 148, 685, 796, 955, 1212, 1594, 1781 |
| AjiI | CACGTC | 1 cut(s) | 193 |
| AjnI | CCWGG | 2 cut(s) | 365, 1160 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1783, 1815, 1844, 1876 |
| AleI | CACNNNNGTG | 1 cut(s) | 1007 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 441, 473 |
| AluBI | AGCT | 6 cut(s) | 251, 428, 479, 512, 950, 1141 |
| AluI | AGCT | 6 cut(s) | 251, 428, 479, 512, 950, 1141 |
| Alw21I | GWGCWC | 3 cut(s) | 562, 1536, 2042 |
| Alw26I | GTCTC | 5 cut(s) | 1259, 1309, 1746, 1891, 1981 |
| Alw44I | GTGCAC | 3 cut(s) | 558, 1532, 2038 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 301 |
| AoxI | GGCC | 2 cut(s) | 278, 939 |
| ApaLI | GTGCAC | 3 cut(s) | 558, 1532, 2038 |
| ApeKI | GCWGC | 4 cut(s) | 378, 425, 1041, 1931 |
| ApoI | RAATTY | 7 cut(s) | 361, 573, 691, 1033, 1207, 1921, 1968 |
| AseI | ATTAAT | 1 cut(s) | 1152 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1062, 2101 |
| AspS9I | GGNCC | 1 cut(s) | 219 |
| AsuHPI | GGTGA | 5 cut(s) | 1067, 1442, 1600, 1886, 1904 |
| AsuII | TTCGAA | 1 cut(s) | 2105 |
| AvaII | GGWCC | 1 cut(s) | 219 |
| BaeGI | GKGCMC | 3 cut(s) | 562, 1536, 2042 |
| BanI | GGYRCC | 1 cut(s) | 312 |
| BbrPI | CACGTG | 1 cut(s) | 557 |
| Bbv12I | GWGCWC | 3 cut(s) | 562, 1536, 2042 |
| BbvI | GCAGC | 4 cut(s) | 365, 437, 1053, 1918 |
| BccI | CCATC | 2 cut(s) | 320, 544 |
| BceAI | ACGGC | 1 cut(s) | 31 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2057, 2091 |
| BciT130I | CCWGG | 2 cut(s) | 367, 1162 |
| BclI | TGATCA | 1 cut(s) | 999 |
| BcoDI | GTCTC | 5 cut(s) | 1259, 1309, 1746, 1891, 1981 |
| BfaI | CTAG | 2 cut(s) | 858, 1629 |
| BisI | GCNGC | 4 cut(s) | 379, 426, 1042, 1932 |
| BlsI | GCNGC | 4 cut(s) | 380, 427, 1043, 1933 |
| Bme1390I | CCNGG | 2 cut(s) | 367, 1162 |
| Bme18I | GGWCC | 1 cut(s) | 219 |
| BmgBI | CACGTC | 1 cut(s) | 193 |
| BmgT120I | GGNCC | 1 cut(s) | 219 |
| BmiI | GGNNCC | 3 cut(s) | 314, 594, 1560 |
| BmrFI | CCNGG | 2 cut(s) | 367, 1162 |
| BmrI | ACTGGG | 1 cut(s) | 1179 |
| BmsI | GCATC | 3 cut(s) | 1288, 1566, 1750 |
| BmuI | ACTGGG | 1 cut(s) | 1179 |
| Bpu14I | TTCGAA | 1 cut(s) | 2105 |
| BpuEI | CTTGAG | 2 cut(s) | 140, 1361 |
| BsaAI | YACGTR | 2 cut(s) | 557, 1228 |
| BsaHI | GRCGYC | 1 cut(s) | 1181 |
| BsaI | GGTCTC | 2 cut(s) | 1746, 1891 |
| BsaJI | CCNNGG | 5 cut(s) | 286, 366, 596, 1537, 1672 |
| BsaWI | WCCGGW | 1 cut(s) | 718 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 287, 1506 |
| Bse1I | ACTGG | 5 cut(s) | 541, 754, 885, 1185, 1831 |
| Bse3DI | GCAATG | 2 cut(s) | 328, 763 |
| BseBI | CCWGG | 2 cut(s) | 367, 1162 |
| BseDI | CCNNGG | 5 cut(s) | 286, 366, 596, 1537, 1672 |
| BseGI | GGATG | 2 cut(s) | 844, 1157 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 287, 1506 |
| BseMI | GCAATG | 2 cut(s) | 328, 763 |
| BseNI | ACTGG | 5 cut(s) | 541, 754, 885, 1185, 1831 |
| BseSI | GKGCMC | 3 cut(s) | 562, 1536, 2042 |
| BseXI | GCAGC | 4 cut(s) | 365, 437, 1053, 1918 |
| BseYI | CCCAGC | 3 cut(s) | 479, 833, 1354 |
| BsgI | GTGCAG | 2 cut(s) | 444, 1350 |
| BshFI | GGCC | 2 cut(s) | 280, 941 |
| BshNI | GGYRCC | 1 cut(s) | 312 |
| BsiHKAI | GWGCWC | 3 cut(s) | 562, 1536, 2042 |
| BsiSI | CCGG | 1 cut(s) | 719 |
| BslFI | GGGAC | 1 cut(s) | 742 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 287, 1506 |
| BsmAI | GTCTC | 5 cut(s) | 1259, 1309, 1746, 1891, 1981 |
| BsmFI | GGGAC | 1 cut(s) | 742 |
| BsmI | GAATGC | 4 cut(s) | 607, 910, 1819, 2028 |
| BsnI | GGCC | 2 cut(s) | 280, 941 |
| Bso31I | GGTCTC | 2 cut(s) | 1746, 1891 |
| Bsp119I | TTCGAA | 1 cut(s) | 2105 |
| Bsp1286I | GDGCHC | 3 cut(s) | 562, 1536, 2042 |
| Bsp1407I | TGTACA | 1 cut(s) | 1230 |
| Bsp143I | GATC | 1 cut(s) | 999 |
| Bsp19I | CCATGG | 1 cut(s) | 1672 |
| BspACI | CCGC | 1 cut(s) | 1556 |
| BspANI | GGCC | 2 cut(s) | 280, 941 |
| BspLI | GGNNCC | 3 cut(s) | 314, 594, 1560 |
| BspT104I | TTCGAA | 1 cut(s) | 2105 |
| BspT107I | GGYRCC | 1 cut(s) | 312 |
| BspTNI | GGTCTC | 2 cut(s) | 1746, 1891 |
| BsrDI | GCAATG | 2 cut(s) | 328, 763 |
| BsrGI | TGTACA | 1 cut(s) | 1230 |
| BsrI | ACTGG | 5 cut(s) | 541, 754, 885, 1185, 1831 |
| BssECI | CCNNGG | 5 cut(s) | 286, 366, 596, 1537, 1672 |
| BssMI | GATC | 1 cut(s) | 999 |
| BssNI | GRCGYC | 1 cut(s) | 1181 |
| BssT1I | CCWWGG | 3 cut(s) | 286, 596, 1672 |
| Bst2UI | CCWGG | 2 cut(s) | 367, 1162 |
| Bst4CI | ACNGT | 3 cut(s) | 1425, 1538, 1748 |
| Bst6I | CTCTTC | 3 cut(s) | 1705, 1880, 1990 |
| BstACI | GRCGYC | 1 cut(s) | 1181 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 611, 1740 |
| BstAUI | TGTACA | 1 cut(s) | 1230 |
| BstBAI | YACGTR | 2 cut(s) | 557, 1228 |
| BstBI | TTCGAA | 1 cut(s) | 2105 |
| BstC8I | GCNNGC | 4 cut(s) | 293, 709, 1330, 1936 |
| BstDEI | CTNAG | 1 cut(s) | 1651 |
| BstDSI | CCRYGG | 2 cut(s) | 1537, 1672 |
| BstEII | GGTNACC | 1 cut(s) | 1606 |
| BstF5I | GGATG | 2 cut(s) | 844, 1157 |
| BstKTI | GATC | 1 cut(s) | 1002 |
| BstMAI | GTCTC | 5 cut(s) | 1259, 1309, 1746, 1891, 1981 |
| BstMBI | GATC | 1 cut(s) | 999 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 135, 327, 425, 434, 611, 947, 1427, 1740 |
| BstNI | CCWGG | 2 cut(s) | 367, 1162 |
| BstNSI | RCATGY | 4 cut(s) | 1332, 1373, 1738, 1938 |
| BstPI | GGTNACC | 1 cut(s) | 1606 |
| BstSCI | CCNGG | 2 cut(s) | 365, 1160 |
| BstSLI | GKGCMC | 3 cut(s) | 562, 1536, 2042 |
| BstV1I | GCAGC | 4 cut(s) | 365, 437, 1053, 1918 |
| BsuRI | GGCC | 2 cut(s) | 280, 941 |
| BtgI | CCRYGG | 2 cut(s) | 1537, 1672 |
| BtrI | CACGTC | 1 cut(s) | 193 |
| BtsCI | GGATG | 2 cut(s) | 844, 1157 |
| BtsI | GCAGTG | 1 cut(s) | 87 |
| BtsIMutI | CAGTG | 3 cut(s) | 87, 560, 1421 |
| Cac8I | GCNNGC | 4 cut(s) | 293, 709, 1330, 1936 |
| CaiI | CAGNNNCTG | 1 cut(s) | 301 |
| Cfr13I | GGNCC | 1 cut(s) | 219 |
| CseI | GACGC | 1 cut(s) | 1189 |
| Csp6I | GTAC | 4 cut(s) | 829, 878, 1225, 1231 |
| CviQI | GTAC | 4 cut(s) | 829, 878, 1225, 1231 |
| DdeI | CTNAG | 1 cut(s) | 1651 |
| DpnI | GATC | 1 cut(s) | 1001 |
| DpnII | GATC | 1 cut(s) | 999 |
| Eam1104I | CTCTTC | 3 cut(s) | 1705, 1880, 1990 |
| EarI | CTCTTC | 3 cut(s) | 1705, 1880, 1990 |
| Eco130I | CCWWGG | 3 cut(s) | 286, 596, 1672 |
| Eco31I | GGTCTC | 2 cut(s) | 1746, 1891 |
| Eco47I | GGWCC | 1 cut(s) | 219 |
| Eco57I | CTGAAG | 1 cut(s) | 2077 |
| Eco72I | CACGTG | 1 cut(s) | 557 |
| Eco91I | GGTNACC | 1 cut(s) | 1606 |
| EcoO109I | RGGNCCY | 1 cut(s) | 219 |
| EcoO65I | GGTNACC | 1 cut(s) | 1606 |
| EcoRI | GAATTC | 3 cut(s) | 573, 1033, 1207 |
| EcoRII | CCWGG | 2 cut(s) | 365, 1160 |
| EcoT14I | CCWWGG | 3 cut(s) | 286, 596, 1672 |
| EcoT22I | ATGCAT | 2 cut(s) | 607, 1375 |
| ErhI | CCWWGG | 3 cut(s) | 286, 596, 1672 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1586, 1618, 1634, 1666 |
| FaqI | GGGAC | 1 cut(s) | 742 |
| FbaI | TGATCA | 1 cut(s) | 999 |
| Fnu4HI | GCNGC | 4 cut(s) | 379, 426, 1042, 1932 |
| FokI | GGATG | 2 cut(s) | 851, 1144 |
| Fsp4HI | GCNGC | 4 cut(s) | 379, 426, 1042, 1932 |
| FspBI | CTAG | 2 cut(s) | 858, 1629 |
| GluI | GCNGC | 4 cut(s) | 379, 426, 1042, 1932 |
| GsaI | CCCAGC | 3 cut(s) | 483, 837, 1358 |
| HaeIII | GGCC | 2 cut(s) | 280, 941 |
| HapII | CCGG | 1 cut(s) | 719 |
| HgaI | GACGC | 1 cut(s) | 1189 |
| Hin1I | GRCGYC | 1 cut(s) | 1181 |
| HincII | GTYRAC | 1 cut(s) | 187 |
| HindII | GTYRAC | 1 cut(s) | 187 |
| HindIII | AAGCTT | 1 cut(s) | 1139 |
| HinfI | GANTC | 4 cut(s) | 18, 1058, 1292, 2102 |
| HpaI | GTTAAC | 1 cut(s) | 187 |
| HpaII | CCGG | 1 cut(s) | 719 |
| HphI | GGTGA | 5 cut(s) | 1067, 1442, 1600, 1886, 1904 |
| Hpy166II | GTNNAC | 5 cut(s) | 187, 560, 1231, 1534, 2040 |
| Hpy188III | TCNNGA | 4 cut(s) | 783, 955, 1256, 1284 |
| Hpy8I | GTNNAC | 5 cut(s) | 187, 560, 1231, 1534, 2040 |
| Hpy99I | CGWCG | 3 cut(s) | 46, 194, 628 |
| HpyAV | CCTTC | 7 cut(s) | 119, 270, 393, 931, 1205, 1636, 2091 |
| HpyCH4III | ACNGT | 3 cut(s) | 1425, 1538, 1748 |
| HpyCH4IV | ACGT | 5 cut(s) | 192, 398, 556, 1227, 1514 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 135, 327, 425, 434, 611, 947, 1427, 1740 |
| HpyF3I | CTNAG | 1 cut(s) | 1651 |
| HpySE526I | ACGT | 5 cut(s) | 192, 398, 556, 1227, 1514 |
| Hsp92I | GRCGYC | 1 cut(s) | 1181 |
| Ksp22I | TGATCA | 1 cut(s) | 999 |
| KspAI | GTTAAC | 1 cut(s) | 187 |
| Kzo9I | GATC | 1 cut(s) | 999 |
| LmnI | GCTCC | 1 cut(s) | 1337 |
| Lsp1109I | GCAGC | 4 cut(s) | 365, 437, 1053, 1918 |
| LweI | GCATC | 3 cut(s) | 1288, 1566, 1750 |
| MaeI | CTAG | 2 cut(s) | 858, 1629 |
| MaeII | ACGT | 5 cut(s) | 192, 398, 556, 1227, 1514 |
| MaeIII | GTNAC | 4 cut(s) | 1465, 1606, 1676, 1909 |
| MalI | GATC | 1 cut(s) | 1001 |
| MboI | GATC | 1 cut(s) | 999 |
| MboII | GAAGA | 8 cut(s) | 4, 27, 30, 854, 1313, 1692, 1897, 1977 |
| MhlI | GDGCHC | 3 cut(s) | 562, 1536, 2042 |
| MlyI | GAGTC | 1 cut(s) | 27 |
| MmeI | TCCRAC | 2 cut(s) | 289, 1578 |
| Mph1103I | ATGCAT | 2 cut(s) | 607, 1375 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1062, 2101 |
| MslI | CAYNNNNRTG | 4 cut(s) | 234, 1007, 1071, 1733 |
| MspI | CCGG | 1 cut(s) | 719 |
| MspR9I | CCNGG | 2 cut(s) | 367, 1162 |
| Mva1269I | GAATGC | 4 cut(s) | 607, 910, 1819, 2028 |
| MvaI | CCWGG | 2 cut(s) | 367, 1162 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 135, 327, 425, 434, 611, 947, 1427, 1740 |
| NcoI | CCATGG | 1 cut(s) | 1672 |
| NdeII | GATC | 1 cut(s) | 999 |
| NlaIV | GGNNCC | 3 cut(s) | 314, 594, 1560 |
| NmuCI | GTSAC | 1 cut(s) | 1606 |
| NsiI | ATGCAT | 2 cut(s) | 607, 1375 |
| NspI | RCATGY | 4 cut(s) | 1332, 1373, 1738, 1938 |
| NspV | TTCGAA | 1 cut(s) | 2105 |
| OliI | CACNNNNGTG | 1 cut(s) | 1007 |
| PaeI | GCATGC | 2 cut(s) | 1332, 1938 |
| PctI | GAATGC | 4 cut(s) | 607, 910, 1819, 2028 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1062, 2101 |
| PfeI | GAWTC | 3 cut(s) | 1058, 1292, 2102 |
| PflFI | GACNNNGTC | 1 cut(s) | 1604 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 287, 1506 |
| PkrI | GCNGC | 4 cut(s) | 380, 427, 1043, 1933 |
| PleI | GAGTC | 1 cut(s) | 26 |
| PmaCI | CACGTG | 1 cut(s) | 557 |
| PmlI | CACGTG | 1 cut(s) | 557 |
| PpsI | GAGTC | 1 cut(s) | 26 |
| Ppu21I | YACGTR | 2 cut(s) | 557, 1228 |
| PpuMI | RGGWCCY | 1 cut(s) | 219 |
| PshBI | ATTAAT | 1 cut(s) | 1152 |
| Psp5II | RGGWCCY | 1 cut(s) | 219 |
| Psp6I | CCWGG | 2 cut(s) | 365, 1160 |
| PspCI | CACGTG | 1 cut(s) | 557 |
| PspEI | GGTNACC | 1 cut(s) | 1606 |
| PspFI | CCCAGC | 3 cut(s) | 479, 833, 1354 |
| PspGI | CCWGG | 2 cut(s) | 365, 1160 |
| PspN4I | GGNNCC | 3 cut(s) | 314, 594, 1560 |
| PspPI | GGNCC | 1 cut(s) | 219 |
| PspPPI | RGGWCCY | 1 cut(s) | 219 |
| PstNI | CAGNNNCTG | 1 cut(s) | 301 |
| PsyI | GACNNNGTC | 1 cut(s) | 1604 |
| RsaI | GTAC | 4 cut(s) | 830, 879, 1226, 1232 |
| RsaNI | GTAC | 4 cut(s) | 829, 878, 1225, 1231 |
| RseI | CAYNNNNRTG | 4 cut(s) | 234, 1007, 1071, 1733 |
| SatI | GCNGC | 4 cut(s) | 379, 426, 1042, 1932 |
| Sau3AI | GATC | 1 cut(s) | 999 |
| Sau96I | GGNCC | 1 cut(s) | 219 |
| SchI | GAGTC | 1 cut(s) | 27 |
| ScrFI | CCNGG | 2 cut(s) | 367, 1162 |
| SduI | GDGCHC | 3 cut(s) | 562, 1536, 2042 |
| SfaNI | GCATC | 3 cut(s) | 1288, 1566, 1750 |
| SfuI | TTCGAA | 1 cut(s) | 2105 |
| SinI | GGWCC | 1 cut(s) | 219 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 234, 1007, 1071, 1733 |
| SmlI | CTYRAG | 2 cut(s) | 155, 1340 |
| SmoI | CTYRAG | 2 cut(s) | 155, 1340 |
| SphI | GCATGC | 2 cut(s) | 1332, 1938 |
| SsiI | CCGC | 1 cut(s) | 1556 |
| SspI | AATATT | 2 cut(s) | 54, 1150 |
| SspMI | CTAG | 2 cut(s) | 858, 1629 |
| StyD4I | CCNGG | 2 cut(s) | 365, 1160 |
| StyI | CCWWGG | 3 cut(s) | 286, 596, 1672 |
| TaaI | ACNGT | 3 cut(s) | 1425, 1538, 1748 |
| TaiI | ACGT | 5 cut(s) | 195, 401, 559, 1230, 1517 |
| TaqI | TCGA | 5 cut(s) | 626, 824, 976, 1257, 2105 |
| TatI | WGTACW | 2 cut(s) | 877, 1230 |
| TfiI | GAWTC | 3 cut(s) | 1058, 1292, 2102 |
| TscAI | CASTG | 3 cut(s) | 94, 567, 1428 |
| TseFI | GTSAC | 1 cut(s) | 1606 |
| TseI | GCWGC | 4 cut(s) | 378, 425, 1041, 1931 |
| Tsp45I | GTSAC | 1 cut(s) | 1606 |
| TspGWI | ACGGA | 1 cut(s) | 1297 |
| TspRI | CASTG | 3 cut(s) | 94, 567, 1428 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1604 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 287, 1506 |
| VneI | GTGCAC | 3 cut(s) | 558, 1532, 2038 |
| VpaK11BI | GGWCC | 1 cut(s) | 219 |
| VspI | ATTAAT | 1 cut(s) | 1152 |
| XapI | RAATTY | 7 cut(s) | 361, 573, 691, 1033, 1207, 1921, 1968 |
| XceI | RCATGY | 4 cut(s) | 1332, 1373, 1738, 1938 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1062, 2101 |
| XspI | CTAG | 2 cut(s) | 858, 1629 |
| Zsp2I | ATGCAT | 2 cut(s) | 607, 1375 |