Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007534

Physical Location & Seq

Genomic Coordinates Reverse (-)

28609792 .. 28610817

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1238200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCAAGCCATGGAGGTCCAGAAGAGCAACACAGACCATGTAGTAGTCACCATAGACCAACCAAACCCTAAACTCAAACAGTCACCCCAGGCAGACCCTAATATTTCAATCCCACAACCCTTATCAAGTGCAAAAACCCTTAGACGCCTAAACTTTTCGAAGCCCCGGTCACGGTTTGAGGAGATTAAGTACCCTTTGCCACCAAAAACAATTCATGAATCTGAACAACTCCAGCCCTTAAACCCCTATCAGGACAACAACTCGTCCACAGATGAAGAAGACGATGAAGACTGGTATGAAAATGAAGAAGACGAAGAAGAAAATAACGATGACAAGCAAGGAAAGCACCTAAAGAGAAGGAAGAGAAAGATAAACAAGCGAGCTGTAATTGAGTGGACTTTGTTTCTCATAATAATGACTTGCTTGGTATGCTCTCTACGCCTAGATTCTCTTAAAAACAACGTGAAATGGGGTTTGGAGATATGGAAATGGTGTGTAATGGTCATGGTTATGTTTTGTGGGCGTTTAGTTTCTGGTTGGGTTGTGGGGTTTCTTGTCTTTATCATAGAGCGAAACTTCATGCTTAGAGAAAAGGTACTTTACTTTGTGTTTGGTTTGAGAAAGAGTTTCCAAAATTGTGCTTGGTTAGGCCTAGTTTTAGTTGCTTGGATGATCATGTTCCCTGACAAGCACAACAAGGTCCTCAAGAAAATCTTTTGTGCTCTTATCGCGGTGTTGATCGGAGCCACGATATGGCTGCTTAAGATCTTGTTTGTTAAAGTCTTGGCATCCTCATTTCATGTAGCCACATTCTTTGATCGCATGAAAGAGAGTGTTTTCCACCACTACATTTTGGAAGCCCTATCTGGGCCTCCACTAGACGAGGACGAAAGGGAGCTTCCACAGCGTCGTTTTCAGGCGTCGAAGTCGTTCCTGCAAGGCTGCGAGACAAGTCTCATGCGGTTTCAAGGTCCTACAGGCGAGAAGGGTCGAGGAGGATTGACATGGAGAAACTTAGAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

342

Amino Acids

39.77

Weight (kDa)

8.72

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007534)

Species	Orthologous Gene IDs
malus_domestica	MD02G1238000.v1.1 MD02G1238200.v1.1 MD07G1078300.v1.1 MD07G1078500.v1.1
prunus_persica	Prupe.2G100800_v2.0.a1
pyrus_communis	pycom02g20350 pycom07g06210 pycom07g06220
rosa_chinensis	RchiOBHm_Chr1g0337341
rosa_laevigata	RLG00000029284
rosa_multiflora	Rmu_sc0006656.1_g000011 Rmu_sc0006824.1_g000012 Rmu_sc0006824.1_g000017 Rmu_sc0018059.1_g000005
rosa_roxburghii	Rroxscaffold_4G00314500
rosa_rugosa	Rorug01G0134500.1
rosa_samantha	Rh1AG153500 Rh1BG122800 Rh1CG144500 Rh1DG161200 Rh6AG271300 Rh6BG515500 Rh6CG521300 Rh6DG507200
rosa_wichuraiana	Rw1G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	753
AccII	CGCG	1 cut(s)	731
AciI	CCGC	2 cut(s)	731, 961
AcyI	GRCGYC	2 cut(s)	145, 920
AfaI	GTAC	2 cut(s)	191, 597
AfiI	CCNNNNNNNGG	4 cut(s)	171, 250, 753, 867
AflII	CTTAAG	1 cut(s)	761
AgsI	TTSAA	2 cut(s)	108, 968
AjnI	CCWGG	1 cut(s)	87
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	2 cut(s)	383, 898
AluI	AGCT	2 cut(s)	383, 898
Alw21I	GWGCWC	1 cut(s)	724
Alw26I	GTCTC	2 cut(s)	941, 959
AoxI	GGCC	2 cut(s)	649, 869
ApeKI	GCWGC	2 cut(s)	757, 942
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
Asp700I	GAANNNNTTC	1 cut(s)	929
AspS9I	GGNCC	4 cut(s)	16, 700, 869, 971
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	40, 75
AsuII	TTCGAA	1 cut(s)	158
AvaII	GGWCC	3 cut(s)	16, 700, 971
BbsI	GAAGAC	3 cut(s)	285, 294, 315
Bbv12I	GWGCWC	1 cut(s)	724
BbvI	GCAGC	2 cut(s)	744, 929
BcgI	CGANNNNNNTGC	2 cut(s)	739, 773
BciT130I	CCWGG	1 cut(s)	89
BclI	TGATCA	1 cut(s)	672
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	941, 959
BfaI	CTAG	3 cut(s)	443, 653, 878
BfmI	CTRYAG	1 cut(s)	975
BfrI	CTTAAG	1 cut(s)	761
BglII	AGATCT	1 cut(s)	765
BisI	GCNGC	2 cut(s)	758, 943
BlsI	GCNGC	2 cut(s)	759, 944
Bme1390I	CCNGG	2 cut(s)	89, 166
Bme18I	GGWCC	3 cut(s)	16, 700, 971
BmgT120I	GGNCC	4 cut(s)	16, 700, 869, 971
BmiI	GGNNCC	1 cut(s)	745
BmrFI	CCNGG	2 cut(s)	89, 166
BmsI	GCATC	1 cut(s)	797
BpiI	GAAGAC	3 cut(s)	285, 294, 315
BpmI	CTGGAG	1 cut(s)	215
Bpu14I	TTCGAA	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	689
BpuMI	CCSGG	1 cut(s)	166
BsaHI	GRCGYC	2 cut(s)	145, 920
BsaJI	CCNNGG	3 cut(s)	9, 87, 164
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	4 cut(s)	171, 250, 753, 867
Bse1I	ACTGG	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	3 cut(s)	9, 87, 164
BseGI	GGATG	2 cut(s)	675, 788
BseLI	CCNNNNNNNGG	4 cut(s)	171, 250, 753, 867
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	2 cut(s)	194, 1008
BseXI	GCAGC	2 cut(s)	744, 929
Bsh1236I	CGCG	1 cut(s)	731
BshFI	GGCC	2 cut(s)	651, 871
BsiHKAI	GWGCWC	1 cut(s)	724
BsiSI	CCGG	1 cut(s)	166
BslI	CCNNNNNNNGG	4 cut(s)	171, 250, 753, 867
BsmAI	GTCTC	2 cut(s)	941, 959
BsnI	GGCC	2 cut(s)	651, 871
Bsp119I	TTCGAA	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	724
Bsp143I	GATC	4 cut(s)	672, 738, 765, 817
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	2 cut(s)	731, 961
BspANI	GGCC	2 cut(s)	651, 871
BspFNI	CGCG	1 cut(s)	731
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	745
BspQI	GCTCTTC	1 cut(s)	17
BspT104I	TTCGAA	1 cut(s)	158
BspTI	CTTAAG	1 cut(s)	761
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	3 cut(s)	9, 87, 164
BssMI	GATC	4 cut(s)	672, 738, 765, 817
BssNI	GRCGYC	2 cut(s)	145, 920
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	81, 174
Bst6I	CTCTTC	2 cut(s)	17, 356
BstACI	GRCGYC	2 cut(s)	145, 920
BstAFI	CTTAAG	1 cut(s)	761
BstBI	TTCGAA	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	6, 381
BstDEI	CTNAG	3 cut(s)	140, 584, 1015
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	675, 788
BstFNI	CGCG	1 cut(s)	731
BstKTI	GATC	4 cut(s)	675, 741, 768, 820
BstMAI	GTCTC	2 cut(s)	941, 959
BstMBI	GATC	4 cut(s)	672, 738, 765, 817
BstMWI	GCNNNNNNNGC	5 cut(s)	343, 429, 438, 728, 904
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	2 cut(s)	87, 164
BstSFI	CTRYAG	1 cut(s)	975
BstUI	CGCG	1 cut(s)	731
BstV1I	GCAGC	2 cut(s)	744, 929
BstV2I	GAAGAC	3 cut(s)	285, 294, 315
BstX2I	RGATCY	1 cut(s)	765
BstYI	RGATCY	1 cut(s)	765
BsuRI	GGCC	2 cut(s)	651, 871
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	675, 788
Cac8I	GCNNGC	2 cut(s)	6, 381
CciI	TCATGA	1 cut(s)	214
Cfr13I	GGNCC	4 cut(s)	16, 700, 869, 971
CseI	GACGC	3 cut(s)	153, 896, 909
Csp6I	GTAC	2 cut(s)	190, 596
CspCI	CAANNNNNGTGG	2 cut(s)	796, 831
CviQI	GTAC	2 cut(s)	190, 596
DdeI	CTNAG	3 cut(s)	140, 584, 1015
DpnI	GATC	4 cut(s)	674, 740, 767, 819
DpnII	GATC	4 cut(s)	672, 738, 765, 817
Eam1104I	CTCTTC	2 cut(s)	17, 356
EarI	CTCTTC	2 cut(s)	17, 356
Eco130I	CCWWGG	1 cut(s)	9
Eco147I	AGGCCT	1 cut(s)	651
Eco47I	GGWCC	3 cut(s)	16, 700, 971
EcoO109I	RGGNCCY	2 cut(s)	700, 971
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FalI	AAGNNNNNCTT	2 cut(s)	698, 730
FbaI	TGATCA	1 cut(s)	672
Fnu4HI	GCNGC	2 cut(s)	758, 943
FokI	GGATG	2 cut(s)	682, 775
Fsp4HI	GCNGC	2 cut(s)	758, 943
FspBI	CTAG	3 cut(s)	443, 653, 878
GluI	GCNGC	2 cut(s)	758, 943
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	2 cut(s)	651, 871
HapII	CCGG	1 cut(s)	166
HgaI	GACGC	3 cut(s)	153, 896, 909
Hin1I	GRCGYC	2 cut(s)	145, 920
HinfI	GANTC	2 cut(s)	218, 446
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	2 cut(s)	40, 75
Hpy166II	GTNNAC	2 cut(s)	267, 396
Hpy188I	TCNGA	2 cut(s)	223, 743
Hpy188III	TCNNGA	4 cut(s)	19, 215, 251, 706
Hpy8I	GTNNAC	2 cut(s)	267, 396
Hpy99I	CGWCG	2 cut(s)	912, 925
HpyAV	CCTTC	3 cut(s)	351, 979, 1013
HpyCH4III	ACNGT	2 cut(s)	81, 174
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	3 cut(s)	4, 131, 937
HpyF10VI	GCNNNNNNNGC	5 cut(s)	343, 429, 438, 728, 904
HpyF3I	CTNAG	3 cut(s)	140, 584, 1015
HpySE526I	ACGT	1 cut(s)	462
Hsp92I	GRCGYC	2 cut(s)	145, 920
Ksp22I	TGATCA	1 cut(s)	672
Kzo9I	GATC	4 cut(s)	672, 738, 765, 817
LguI	GCTCTTC	1 cut(s)	17
LmnI	GCTCC	2 cut(s)	743, 895
Lsp1109I	GCAGC	2 cut(s)	744, 929
LweI	GCATC	1 cut(s)	797
MaeI	CTAG	3 cut(s)	443, 653, 878
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	3 cut(s)	46, 81, 168
MalI	GATC	4 cut(s)	674, 740, 767, 819
MboI	GATC	4 cut(s)	672, 738, 765, 817
MboII	GAAGA	9 cut(s)	34, 287, 290, 299, 317, 320, 326, 329, 373
MflI	RGATCY	1 cut(s)	765
MhlI	GDGCHC	1 cut(s)	724
MluCI	AATT	3 cut(s)	210, 387, 634
MnlI	CCTC	8 cut(s)	7, 172, 713, 802, 877, 882, 986, 989
MroXI	GAANNNNTTC	1 cut(s)	929
MseI	TTAA	5 cut(s)	186, 239, 453, 762, 777
MslI	CAYNNNNRTG	2 cut(s)	413, 509
MspCI	CTTAAG	1 cut(s)	761
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	2 cut(s)	89, 166
MvaI	CCWGG	1 cut(s)	89
MvnI	CGCG	1 cut(s)	731
MwoI	GCNNNNNNNGC	5 cut(s)	343, 429, 438, 728, 904
NciI	CCSGG	1 cut(s)	166
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	4 cut(s)	672, 738, 765, 817
NlaIV	GGNNCC	1 cut(s)	745
NmuCI	GTSAC	3 cut(s)	46, 81, 168
NspV	TTCGAA	1 cut(s)	158
PagI	TCATGA	1 cut(s)	214
PceI	AGGCCT	1 cut(s)	651
PciSI	GCTCTTC	1 cut(s)	17
PdmI	GAANNNNTTC	1 cut(s)	929
PfeI	GAWTC	2 cut(s)	218, 446
PflMI	CCANNNNNTGG	1 cut(s)	753
PkrI	GCNGC	2 cut(s)	759, 944
PpuMI	RGGWCCY	2 cut(s)	700, 971
Psp5II	RGGWCCY	2 cut(s)	700, 971
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	745
PspPI	GGNCC	4 cut(s)	16, 700, 869, 971
PspPPI	RGGWCCY	2 cut(s)	700, 971
PsuI	RGATCY	1 cut(s)	765
RsaI	GTAC	2 cut(s)	191, 597
RsaNI	GTAC	2 cut(s)	190, 596
RseI	CAYNNNNRTG	2 cut(s)	413, 509
SapI	GCTCTTC	1 cut(s)	17
SaqAI	TTAA	5 cut(s)	186, 239, 453, 762, 777
SatI	GCNGC	2 cut(s)	758, 943
Sau3AI	GATC	4 cut(s)	672, 738, 765, 817
Sau96I	GGNCC	4 cut(s)	16, 700, 869, 971
ScrFI	CCNGG	2 cut(s)	89, 166
SduI	GDGCHC	1 cut(s)	724
SetI	ASST	9 cut(s)	18, 351, 385, 465, 597, 702, 900, 973, 1024
SfaNI	GCATC	1 cut(s)	797
SfcI	CTRYAG	1 cut(s)	975
SfuI	TTCGAA	1 cut(s)	158
SinI	GGWCC	3 cut(s)	16, 700, 971
SmiMI	CAYNNNNRTG	2 cut(s)	413, 509
SmlI	CTYRAG	2 cut(s)	704, 761
SmoI	CTYRAG	2 cut(s)	704, 761
Sse9I	AATT	3 cut(s)	210, 387, 634
SseBI	AGGCCT	1 cut(s)	651
SsiI	CCGC	2 cut(s)	731, 961
SspI	AATATT	1 cut(s)	103
SspMI	CTAG	3 cut(s)	443, 653, 878
StuI	AGGCCT	1 cut(s)	651
StyD4I	CCNGG	2 cut(s)	87, 164
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	81, 174
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	3 cut(s)	158, 923, 991
TasI	AATT	3 cut(s)	210, 387, 634
TfiI	GAWTC	2 cut(s)	218, 446
Tru1I	TTAA	5 cut(s)	186, 239, 453, 762, 777
Tru9I	TTAA	5 cut(s)	186, 239, 453, 762, 777
TseFI	GTSAC	3 cut(s)	46, 81, 168
TseI	GCWGC	2 cut(s)	757, 942
Tsp45I	GTSAC	3 cut(s)	46, 81, 168
TspDTI	ATGAA	9 cut(s)	203, 231, 288, 300, 312, 318, 568, 788, 839
Van91I	CCANNNNNTGG	1 cut(s)	753
Vha464I	CTTAAG	1 cut(s)	761
VpaK11BI	GGWCC	3 cut(s)	16, 700, 971
XmnI	GAANNNNTTC	1 cut(s)	929
XspI	CTAG	3 cut(s)	443, 653, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.