Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007534

Physical Location & Seq

Genomic Coordinates Forward (+)

66099535 .. 66101210

Gene Structure 1676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG507200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGACATTTTCCTTAACGTTGCTCCGCCTGGTTCTAAGTGAGAACAAAAAAATATTGCCCAAGTGCTTATTTTTTAGATATCTTTTTGTCATTTCCATTCTTGTGTTAAATATCTTACATCTGAGTAGGTACATTGAGGAGGGGGATCTCTTGAGGTTCATGAGAAAGGAAGAGGTCGACCTTGTATGGCCGCTGATTGACGTAGCAATGACCGGACAAGTTGACAGAAAAACTCTAACAGACTGGGTGGTGAAGGTCTACACTGATCGCAAAGCATTAGCTCATGCATTGTCTGATACCAAAGCAGTTACACGGCAAGTCAACAATCTTGTGACTAGCATTGTGTTTATTATCATCATCGTTGTGAGCCTTCTAGTGGTGGAAATTGCAACCACAAGCTTTTTTGTCTTCCTATCATCACAGCTCGTATTAGCAGCTTTTGCTTTCGGAAACACTTGCAAGAATGTATTTGAATCTATCATGTTTCTATTTGTGGCTCATCCATATGATGTTGGTGACTGCATTGTTTTTGAAGGCGTTCCGATGATAGTTGAAGAGATAAACATCTTTACTACAGTTTTCTTGAGACTCAGTAATAACGAGAAGGTGTACTATCCGAATTCAGTTTTATCTGCAACATCGATCAGCAATTACTCCAGAAGTCCAGATATGAGAGATGCTGTAGAGTTCTCAATTGCTTTAACACCAGTGGAGAAGATAGTCAAGTTGAAAGAGAAAATAAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

249

Amino Acids

28.39

Weight (kDa)

6.84

Isoelectric Point (pI)

26.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MS_channel_2nd	PF00924	152 - 220	3e-11	Mechanosensitive ion channel, beta-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007534)

Species	Orthologous Gene IDs
malus_domestica	MD02G1238000.v1.1 MD02G1238200.v1.1 MD07G1078300.v1.1 MD07G1078500.v1.1
prunus_persica	Prupe.2G100800_v2.0.a1
pyrus_communis	pycom02g20350 pycom07g06210 pycom07g06220
rosa_chinensis	RchiOBHm_Chr1g0337341
rosa_laevigata	RLG00000029284
rosa_multiflora	Rmu_sc0006656.1_g000011 Rmu_sc0006824.1_g000012 Rmu_sc0006824.1_g000017 Rmu_sc0018059.1_g000005
rosa_roxburghii	Rroxscaffold_4G00314500
rosa_rugosa	Rorug01G0134500.1
rosa_samantha	Rh1AG153500 Rh1BG122800 Rh1CG144500 Rh1DG161200 Rh6AG271300 Rh6BG515500 Rh6CG521300 Rh6DG507200
rosa_wichuraiana	Rw1G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	177, 258
AciI	CCGC	2 cut(s)	25, 191
AclI	AACGTT	1 cut(s)	17
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	619
AfaI	GTAC	2 cut(s)	131, 611
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	4 cut(s)	473, 533, 554, 730
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	4 cut(s)	281, 399, 424, 437
AluI	AGCT	4 cut(s)	281, 399, 424, 437
Alw26I	GTCTC	1 cut(s)	580
AlwI	GGATC	1 cut(s)	153
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	1 cut(s)	619
Asp700I	GAANNNNTTC	1 cut(s)	537
AsuHPI	GGTGA	2 cut(s)	262, 527
BbsI	GAAGAC	1 cut(s)	400
BbvI	GCAGC	1 cut(s)	446
BceAI	ACGGC	1 cut(s)	329
BciT130I	CCWGG	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	580
BfaI	CTAG	2 cut(s)	336, 374
BfmI	CTRYAG	2 cut(s)	573, 681
BisI	GCNGC	2 cut(s)	191, 435
BlsI	GCNGC	2 cut(s)	192, 436
Bme1390I	CCNGG	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	29
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	1 cut(s)	667
BmuI	ACTGGG	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	400
BpmI	CTGGAG	1 cut(s)	640
BpuEI	CTTGAG	2 cut(s)	172, 604
Bsa29I	ATCGAT	1 cut(s)	641
BsaBI	GATNNNNATC	1 cut(s)	563
BsaWI	WCCGGW	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse1I	ACTGG	2 cut(s)	248, 707
Bse3DI	GCAATG	1 cut(s)	213
Bse8I	GATNNNNATC	1 cut(s)	563
BseBI	CCWGG	1 cut(s)	29
BseCI	ATCGAT	1 cut(s)	641
BseGI	GGATG	1 cut(s)	499
BseJI	GATNNNNATC	1 cut(s)	563
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	2 cut(s)	113, 604
BseNI	ACTGG	2 cut(s)	248, 707
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	446
BshFI	GGCC	1 cut(s)	190
BshVI	ATCGAT	1 cut(s)	641
BsiSI	CCGG	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	580
BsnI	GGCC	1 cut(s)	190
Bsp143I	GATC	3 cut(s)	145, 265, 642
BspACI	CCGC	2 cut(s)	25, 191
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	2 cut(s)	114, 603
BspDI	ATCGAT	1 cut(s)	641
BspHI	TCATGA	1 cut(s)	159
BspPI	GGATC	1 cut(s)	153
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	248, 707
BssMI	GATC	3 cut(s)	145, 265, 642
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	577
Bst6I	CTCTTC	2 cut(s)	165, 549
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstDEI	CTNAG	3 cut(s)	35, 122, 590
BstF5I	GGATG	1 cut(s)	499
BstKTI	GATC	3 cut(s)	148, 268, 645
BstMAI	GTCTC	1 cut(s)	580
BstMBI	GATC	3 cut(s)	145, 265, 642
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	2 cut(s)	573, 681
BstV1I	GCAGC	1 cut(s)	446
BstV2I	GAAGAC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	641
BsuRI	GGCC	1 cut(s)	190
BsuTUI	ATCGAT	1 cut(s)	641
BtsCI	GGATG	1 cut(s)	499
BtsIMutI	CAGTG	2 cut(s)	261, 714
CciI	TCATGA	1 cut(s)	159
ClaI	ATCGAT	1 cut(s)	641
Csp6I	GTAC	2 cut(s)	130, 610
CviAII	CATG	3 cut(s)	160, 284, 481
CviJI	RGCY	7 cut(s)	190, 281, 369, 399, 424, 437, 497
CviKI_1	RGCY	7 cut(s)	190, 281, 369, 399, 424, 437, 497
CviQI	GTAC	2 cut(s)	130, 610
DdeI	CTNAG	3 cut(s)	35, 122, 590
DpnI	GATC	3 cut(s)	147, 267, 644
DpnII	GATC	3 cut(s)	145, 265, 642
EaeI	YGGCCR	1 cut(s)	188
Eam1104I	CTCTTC	2 cut(s)	165, 549
EarI	CTCTTC	2 cut(s)	165, 549
EciI	GGCGGA	1 cut(s)	14
Eco32I	GATATC	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	619
EcoRII	CCWGG	1 cut(s)	27
EcoRV	GATATC	1 cut(s)	80
EcoT22I	ATGCAT	1 cut(s)	289
FaeI	CATG	3 cut(s)	163, 287, 484
FaiI	YATR	7 cut(s)	161, 187, 285, 482, 505, 507, 671
FatI	CATG	3 cut(s)	159, 283, 480
FauNDI	CATATG	1 cut(s)	505
FblI	GTMKAC	2 cut(s)	177, 258
Fnu4HI	GCNGC	2 cut(s)	191, 435
FokI	GGATG	1 cut(s)	486
Fsp4HI	GCNGC	2 cut(s)	191, 435
FspBI	CTAG	2 cut(s)	336, 374
GluI	GCNGC	2 cut(s)	191, 435
GsuI	CTGGAG	1 cut(s)	640
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	1 cut(s)	213
Hin1II	CATG	3 cut(s)	163, 287, 484
HincII	GTYRAC	3 cut(s)	178, 223, 322
HindII	GTYRAC	3 cut(s)	178, 223, 322
HindIII	AAGCTT	1 cut(s)	397
HinfI	GANTC	2 cut(s)	473, 588
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	2 cut(s)	262, 527
Hpy166II	GTNNAC	5 cut(s)	178, 223, 259, 322, 610
Hpy188I	TCNGA	5 cut(s)	123, 295, 449, 543, 618
Hpy188III	TCNNGA	5 cut(s)	151, 160, 583, 657, 665
Hpy8I	GTNNAC	5 cut(s)	178, 223, 259, 322, 610
HpyAV	CCTTC	4 cut(s)	247, 380, 527, 598
HpyCH4III	ACNGT	1 cut(s)	577
HpyCH4IV	ACGT	2 cut(s)	17, 201
HpyCH4V	TGCA	5 cut(s)	287, 389, 459, 522, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
HpyF3I	CTNAG	3 cut(s)	35, 122, 590
HpySE526I	ACGT	2 cut(s)	17, 201
Hsp92II	CATG	3 cut(s)	163, 287, 484
Kzo9I	GATC	3 cut(s)	145, 265, 642
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	7 cut(s)	14, 41, 226, 229, 670, 678, 720
Lsp1109I	GCAGC	1 cut(s)	446
LweI	GCATC	1 cut(s)	667
MaeI	CTAG	2 cut(s)	336, 374
MaeII	ACGT	2 cut(s)	17, 201
MaeIII	GTNAC	3 cut(s)	307, 331, 515
MalI	GATC	3 cut(s)	147, 267, 644
MboI	GATC	3 cut(s)	145, 265, 642
MboII	GAAGA	4 cut(s)	182, 400, 566, 727
MfeI	CAATTG	1 cut(s)	693
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	4 cut(s)	384, 619, 649, 693
MlyI	GAGTC	1 cut(s)	582
MnlI	CCTC	4 cut(s)	130, 133, 147, 166
Mph1103I	ATGCAT	1 cut(s)	289
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	3 cut(s)	14, 107, 701
MslI	CAYNNNNRTG	3 cut(s)	101, 362, 504
MspA1I	CMGCKG	1 cut(s)	193
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	29
MunI	CAATTG	1 cut(s)	693
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	440
NdeI	CATATG	1 cut(s)	505
NdeII	GATC	3 cut(s)	145, 265, 642
NlaIII	CATG	3 cut(s)	163, 287, 484
NmuCI	GTSAC	2 cut(s)	331, 515
NsiI	ATGCAT	1 cut(s)	289
PagI	TCATGA	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	1 cut(s)	473
PkrI	GCNGC	2 cut(s)	192, 436
PleI	GAGTC	1 cut(s)	582
PpsI	GAGTC	1 cut(s)	582
Psp1406I	AACGTT	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	2 cut(s)	131, 611
RsaNI	GTAC	2 cut(s)	130, 610
RseI	CAYNNNNRTG	3 cut(s)	101, 362, 504
SalI	GTCGAC	1 cut(s)	176
SaqAI	TTAA	3 cut(s)	14, 107, 701
SatI	GCNGC	2 cut(s)	191, 435
Sau3AI	GATC	3 cut(s)	145, 265, 642
SchI	GAGTC	1 cut(s)	582
ScrFI	CCNGG	1 cut(s)	29
SfaNI	GCATC	1 cut(s)	667
SfcI	CTRYAG	2 cut(s)	573, 681
SmiMI	CAYNNNNRTG	3 cut(s)	101, 362, 504
SmlI	CTYRAG	2 cut(s)	151, 583
SmoI	CTYRAG	2 cut(s)	151, 583
Sse9I	AATT	4 cut(s)	384, 619, 649, 693
SsiI	CCGC	2 cut(s)	25, 191
SspI	AATATT	1 cut(s)	54
SspMI	CTAG	2 cut(s)	336, 374
StyD4I	CCNGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	577
TaiI	ACGT	2 cut(s)	20, 204
TaqI	TCGA	2 cut(s)	177, 641
TasI	AATT	4 cut(s)	384, 619, 649, 693
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	3 cut(s)	14, 107, 701
Tru9I	TTAA	3 cut(s)	14, 107, 701
TscAI	CASTG	2 cut(s)	268, 714
TseFI	GTSAC	2 cut(s)	331, 515
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	2 cut(s)	331, 515
TspDTI	ATGAA	1 cut(s)	148
TspRI	CASTG	2 cut(s)	268, 714
XapI	RAATTY	1 cut(s)	619
XmiI	GTMKAC	2 cut(s)	177, 258
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	2 cut(s)	336, 374
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.