MD07G1078500.v1.1

Mechanosensitive ion channel protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
7569777 .. 7577175
7399 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1078500.v1.1.491

Sequence Viewer

Length: 2091 bp
ATGGAGGTCCAGAAGAGCAACACAGAGCATGTGATAGTCACCATAGACCAACCAAACCCTAAACTCAAACAGTCACCCCAACCAGACTCAAATATTTCAATCCCACAACCCTTATCAAGTGCAAAAACCCTTAGACGCCTAAACTTCTCGAAGCCTCGGTCACGGTTTGAGGAGATTAAGTACCCTTTGCCACCACGAACAATTCTCGAATCGGAAGAACTCCAACACTTAAACCCATCCAAAGAAAATAACTCGTCCACGGATGAAGATGACGATGAAGACTGGTATGAAAATGAAGACGATGAAGATGGCGACGGCAAGCACGGAAAGCACCGAAAGAGAAGGAAGAGAAAGATAAACAAGCGAGCTGTAATTGAGTGGACTTTGTTTCTCATAATAATGACTTGCTTGGTGTGCTCCCTAACCCTAGATTTTCTGAAAAATAAAGTGAAATGGGGTTTGGAGATATGGAAATGGTGTCTAATGGTCATGGTTTTGTTTTGTGGGCGTTTAGTCTCTGGTTGGGTTGTGGGGTTTCTTGTCTTTCTCATAGAGAGAAACTTCATGCTTAGAGAAAAGGTACTCTACTTTGTGTTTGGTTTGAGGAAGAGTTTCCAAAATTGTGCTTGGTTAGGCCTTGTTTTGGTTGCATGGACGATCATGTTCCCTGACAAGCACAGCAAGGTCCTCAAGAAAGTCTTTCGTGCTCTTATTGCCGTGCTAATAGGAGCCACGATATGGCTGCTTAAGATTTTGTTTGTTAAAGTCTTGGCATCCTCGTTTCATGTAGCTACATTCTTTGATCGCATGAAAGAGAGTGTTTTCCAGCACTATATTTTGGAAACCCTATCTGGGCCTCCACTAGACGAGGACGAAAGGGAGCTTCCACATCATCGTTTTCAGGCTTCGAAGTCGCTGCCCGCAAGGCTGAGAGACAAGTCTCATCCAGTTTCAAGGTCTTATAGGAGAGAAGGGTCGAGGAGGATTGACATGGACAAGCTTAGAAGGTTGAGCATGACAAGAAGGGCAACGGCGTGGAGCGTGAAGAGGCTTGTAAACTACGTTAAGTCTTCGGGGTTGTCCACGATTTCGAGAACCATGGATGATTTTGGAAATGCAGAGTCGGAGATTACAAGTGAATGGGAGGCCAGAAATAGTGGTCAAAAGATTTTCAAGAACGTTGCCAAGCCCGGTGCTAAATACATAGAAGAGGAAGATTTACTACGGTTCTTGAAGAGTGATGAAACTCACACCATATTTCCTCTCTTTGAAGGAGCAATTGAAACTGGAAAAATAACGAAGTCTTCCTTCAGAAATTGGGTGGTGTATGCCTATATTGAGCGTAAAGCATTGGCTCACTCCTTGAATGATACCAAGACCGCTGTCCAACAACTTCACAAGTTGGCGAGTGCAGTCGTAACTGTAATTATAACCGTGGTGAGCCTTTTGGTGATGGGTCTGGCCACAACTAAGGTGATCTTTGTTGTTACGTCTCAACTGCTGCTTGTGGGATTCATGTTCCAGAACATGTGCAAAACTATGTTCGAGTCCATCATCTTTGTGTTTGTGATGCACCCTTTCGATGTTGGTGATCGATGTGTGGTGGATGGCGTGCAGATGATTGTAGAAGAGATGAACATTTTATCAACCGTTTTCTTAAGATACGACAATGAGAAAATATACTACCCAAATTCTGTGCTTCTTACAAAGCCCATTAGTAATTTCAGAAGGAGTCCAGATATGGCCGACACTGTCGATTTCACAATTGATGTCTCTACTCCGGTTGATGATGTTTCTGCACTCAAGAAGTCCATACAATCATACCTTGAGAGCAAGCCGAAGTATTGGAACCAAAAACACTCAATCCTAGTGAAGGAGATAGAGAATGTGGACAAGATGAAAATGACGCTATGTGTTCAACACACCATGAACCATCAAAATTATGGGGAAAAGAGTGCTCGAAGATCAGAGCTTGTGTTCGAGTTAAAGAAAATTTTCCAAAATCTTGGCATAAAGTACCATCTTCTTCCTCAAGAAGTAAACATACCGCAATTCAACACAATCAACGGGAGGTTAACCATGGCTTCTTAA

Protein Analysis

697

Amino Acids

80.57

Weight (kDa)

9.32

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MS_channel_2nd PF00924 519 - 577 9.4e-11 Mechanosensitive ion channel, beta-domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1430
AccB7I CCANNNNNTGG 1 cut(s) 738
AciI CCGC 3 cut(s) 921, 1380, 2048
AclI AACGTT 1 cut(s) 1179
AcoI YGGCCR 2 cut(s) 1461, 1743
AcsI RAATTY 2 cut(s) 1690, 1992
AcuI CTGAAG 1 cut(s) 1294
AcyI GRCGYC 1 cut(s) 136
AfaI GTAC 3 cut(s) 182, 582, 2018
AfiI CCNNNNNNNGG 4 cut(s) 643, 738, 852, 1873
AflII CTTAAG 2 cut(s) 746, 1657
AflIII ACRYGT 1 cut(s) 1527
AgsI TTSAA 9 cut(s) 99, 954, 1174, 1234, 1271, 1283, 1366, 1919, 2056
AjuI GAANNNNNNNTTGG 2 cut(s) 443, 475
AluBI AGCT 5 cut(s) 368, 791, 883, 1000, 1972
AluI AGCT 5 cut(s) 368, 791, 883, 1000, 1972
Alw21I GWGCWC 3 cut(s) 419, 709, 1960
Alw26I GTCTC 5 cut(s) 520, 927, 945, 1497, 1777
AoxI GGCC 5 cut(s) 634, 854, 1146, 1461, 1743
ApeKI GCWGC 3 cut(s) 742, 916, 1501
ApoI RAATTY 2 cut(s) 1690, 1992
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
Asp700I GAANNNNTTC 2 cut(s) 611, 1994
AspS9I GGNCC 3 cut(s) 7, 685, 854
AsuC2I CCSGG 1 cut(s) 1191
AsuHPI GGTGA 6 cut(s) 31, 66, 1450, 1462, 1486, 1601
AsuII TTCGAA 1 cut(s) 908
AvaII GGWCC 2 cut(s) 7, 685
BalI TGGCCA 1 cut(s) 1463
BarI GAAGNNNNNNTAC 4 cut(s) 1206, 1238, 2028, 2060
BbsI GAAGAC 4 cut(s) 285, 303, 1062, 1296
Bbv12I GWGCWC 3 cut(s) 419, 709, 1960
BbvI GCAGC 3 cut(s) 729, 903, 1488
BccI CCATC 7 cut(s) 244, 302, 1447, 1559, 1601, 1941, 2028
BceAI ACGGC 3 cut(s) 331, 701, 1047
BcgI CGANNNNNNTGC 4 cut(s) 724, 758, 898, 932
BcnI CCSGG 1 cut(s) 1191
BcoDI GTCTC 5 cut(s) 520, 927, 945, 1497, 1777
BfaI CTAG 3 cut(s) 428, 863, 1868
BfrI CTTAAG 2 cut(s) 746, 1657
BglI GCCNNNNNGGC 1 cut(s) 925
BisI GCNGC 3 cut(s) 743, 917, 1502
BlsI GCNGC 3 cut(s) 744, 918, 1503
Bme1390I CCNGG 1 cut(s) 1191
Bme18I GGWCC 2 cut(s) 7, 685
BmgT120I GGNCC 3 cut(s) 7, 685, 854
BmiI GGNNCC 2 cut(s) 730, 1850
BmrFI CCNGG 1 cut(s) 1191
BmsI GCATC 2 cut(s) 782, 1560
BoxI GACNNNNGTC 1 cut(s) 1382
BpiI GAAGAC 4 cut(s) 285, 303, 1062, 1296
Bpu14I TTCGAA 1 cut(s) 908
BpuEI CTTGAG 4 cut(s) 674, 1787, 1847, 2016
BpuMI CCSGG 1 cut(s) 1191
Bsa29I ATCGAT 1 cut(s) 1594
BsaHI GRCGYC 1 cut(s) 136
BsaJI CCNNGG 5 cut(s) 155, 258, 1098, 1434, 2079
BsaWI WCCGGW 1 cut(s) 1780
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 4 cut(s) 643, 738, 852, 1873
Bse1I ACTGG 3 cut(s) 287, 947, 1291
BseCI ATCGAT 1 cut(s) 1594
BseDI CCNNGG 5 cut(s) 155, 258, 1098, 1434, 2079
BseGI GGATG 6 cut(s) 236, 268, 773, 943, 1108, 1612
BseLI CCNNNNNNNGG 4 cut(s) 643, 738, 852, 1873
BseMII CTCAG 1 cut(s) 920
BseNI ACTGG 3 cut(s) 287, 947, 1291
BseRI GAGGAG 2 cut(s) 185, 994
BseXI GCAGC 3 cut(s) 729, 903, 1488
BsgI GTGCAG 3 cut(s) 1431, 1634, 1782
BshFI GGCC 5 cut(s) 636, 856, 1148, 1463, 1745
BshVI ATCGAT 1 cut(s) 1594
BsiHKAI GWGCWC 3 cut(s) 419, 709, 1960
BsiSI CCGG 2 cut(s) 1191, 1781
BslI CCNNNNNNNGG 4 cut(s) 643, 738, 852, 1873
BsmAI GTCTC 5 cut(s) 520, 927, 945, 1497, 1777
BsmBI CGTCTC 1 cut(s) 1497
BsnI GGCC 5 cut(s) 636, 856, 1148, 1463, 1745
Bsp119I TTCGAA 1 cut(s) 908
Bsp1286I GDGCHC 3 cut(s) 419, 709, 1960
Bsp143I GATC 5 cut(s) 657, 802, 1476, 1591, 1964
Bsp19I CCATGG 2 cut(s) 1098, 2079
BspACI CCGC 3 cut(s) 921, 1380, 2048
BspANI GGCC 5 cut(s) 636, 856, 1148, 1463, 1745
BspCNI CTCAG 1 cut(s) 921
BspDI ATCGAT 1 cut(s) 1594
BspLI GGNNCC 2 cut(s) 730, 1850
BspQI GCTCTTC 1 cut(s) 8
BspT104I TTCGAA 1 cut(s) 908
BspTI CTTAAG 2 cut(s) 746, 1657
BsrI ACTGG 3 cut(s) 287, 947, 1291
BssECI CCNNGG 5 cut(s) 155, 258, 1098, 1434, 2079
BssMI GATC 5 cut(s) 657, 802, 1476, 1591, 1964
BssNI GRCGYC 1 cut(s) 136
BssT1I CCWWGG 2 cut(s) 1098, 2079
Bst4CI ACNGT 7 cut(s) 72, 165, 1227, 1423, 1435, 1651, 1753
Bst6I CTCTTC 7 cut(s) 8, 341, 602, 1040, 1203, 1229, 1623
BstACI GRCGYC 1 cut(s) 136
BstAFI CTTAAG 2 cut(s) 746, 1657
BstBI TTCGAA 1 cut(s) 908
BstC8I GCNNGC 5 cut(s) 320, 366, 921, 1613, 1835
BstDEI CTNAG 5 cut(s) 131, 569, 929, 1001, 1470
BstDSI CCRYGG 4 cut(s) 258, 1098, 1434, 2079
BstENI CCTNNNNNAGG 1 cut(s) 1871
BstF5I GGATG 6 cut(s) 236, 268, 773, 943, 1108, 1612
BstKTI GATC 5 cut(s) 660, 805, 1479, 1594, 1967
BstMAI GTCTC 5 cut(s) 520, 927, 945, 1497, 1777
BstMBI GATC 5 cut(s) 657, 802, 1476, 1591, 1964
BstMWI GCNNNNNNNGC 4 cut(s) 328, 414, 713, 925
BstNSI RCATGY 2 cut(s) 32, 1531
BstPAI GACNNNNGTC 1 cut(s) 1382
BstSCI CCNGG 1 cut(s) 1189
BstV1I GCAGC 3 cut(s) 729, 903, 1488
BstV2I GAAGAC 4 cut(s) 285, 303, 1062, 1296
BstXI CCANNNNNNTGG 1 cut(s) 2006
Bsu15I ATCGAT 1 cut(s) 1594
BsuRI GGCC 5 cut(s) 636, 856, 1148, 1463, 1745
BsuTUI ATCGAT 1 cut(s) 1594
BtgI CCRYGG 4 cut(s) 258, 1098, 1434, 2079
BtsCI GGATG 6 cut(s) 236, 268, 773, 943, 1108, 1612
BtsIMutI CAGTG 1 cut(s) 1749
Cac8I GCNNGC 5 cut(s) 320, 366, 921, 1613, 1835
Cfr13I GGNCC 3 cut(s) 7, 685, 854
ClaI ATCGAT 1 cut(s) 1594
CseI GACGC 2 cut(s) 144, 1915
Csp6I GTAC 3 cut(s) 181, 581, 2017
CviQI GTAC 3 cut(s) 181, 581, 2017
DdeI CTNAG 5 cut(s) 131, 569, 929, 1001, 1470
DpnI GATC 5 cut(s) 659, 804, 1478, 1593, 1966
DpnII GATC 5 cut(s) 657, 802, 1476, 1591, 1964
EaeI YGGCCR 2 cut(s) 1461, 1743
Eam1104I CTCTTC 7 cut(s) 8, 341, 602, 1040, 1203, 1229, 1623
EarI CTCTTC 7 cut(s) 8, 341, 602, 1040, 1203, 1229, 1623
Eco130I CCWWGG 2 cut(s) 1098, 2079
Eco147I AGGCCT 1 cut(s) 636
Eco47I GGWCC 2 cut(s) 7, 685
Eco57I CTGAAG 1 cut(s) 1294
EcoNI CCTNNNNNAGG 1 cut(s) 1871
EcoO109I RGGNCCY 1 cut(s) 685
EcoT14I CCWWGG 2 cut(s) 1098, 2079
ErhI CCWWGG 2 cut(s) 1098, 2079
Esp3I CGTCTC 1 cut(s) 1497
FalI AAGNNNNNCTT 6 cut(s) 683, 715, 1292, 1324, 1463, 1495
FauI CCCGC 1 cut(s) 928
Fnu4HI GCNGC 3 cut(s) 743, 917, 1502
FokI GGATG 6 cut(s) 223, 275, 760, 930, 1115, 1619
Fsp4HI GCNGC 3 cut(s) 743, 917, 1502
FspBI CTAG 3 cut(s) 428, 863, 1868
GluI GCNGC 3 cut(s) 743, 917, 1502
HaeIII GGCC 5 cut(s) 636, 856, 1148, 1463, 1745
HapII CCGG 2 cut(s) 1191, 1781
HgaI GACGC 2 cut(s) 144, 1915
Hin1I GRCGYC 1 cut(s) 136
HincII GTYRAC 1 cut(s) 2076
HindII GTYRAC 1 cut(s) 2076
HindIII AAGCTT 1 cut(s) 998
HinfI GANTC 6 cut(s) 86, 209, 1121, 1512, 1547, 1732
HpaI GTTAAC 1 cut(s) 2076
HpaII CCGG 2 cut(s) 1191, 1781
HphI GGTGA 6 cut(s) 31, 66, 1450, 1462, 1486, 1601
Hpy166II GTNNAC 7 cut(s) 258, 381, 1057, 1083, 1891, 2041, 2076
Hpy188I TCNGA 6 cut(s) 214, 438, 1126, 1313, 1727, 1969
Hpy8I GTNNAC 7 cut(s) 258, 381, 1057, 1083, 1891, 2041, 2076
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 8 cut(s) 336, 965, 999, 1017, 1265, 1318, 1722, 1867
HpyCH4III ACNGT 7 cut(s) 72, 165, 1227, 1423, 1435, 1651, 1753
HpyCH4IV ACGT 3 cut(s) 1062, 1179, 1490
HpyCH4V TGCA 8 cut(s) 122, 650, 1118, 1412, 1533, 1573, 1615, 1799
HpyF10VI GCNNNNNNNGC 4 cut(s) 328, 414, 713, 925
HpyF3I CTNAG 5 cut(s) 131, 569, 929, 1001, 1470
HpySE526I ACGT 3 cut(s) 1062, 1179, 1490
Hsp92I GRCGYC 1 cut(s) 136
KspAI GTTAAC 1 cut(s) 2076
Kzo9I GATC 5 cut(s) 657, 802, 1476, 1591, 1964
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 5 cut(s) 422, 728, 880, 1038, 1274
Lsp1109I GCAGC 3 cut(s) 729, 903, 1488
LweI GCATC 2 cut(s) 782, 1560
MaeI CTAG 3 cut(s) 428, 863, 1868
MaeII ACGT 3 cut(s) 1062, 1179, 1490
MaeIII GTNAC 5 cut(s) 37, 72, 159, 1417, 1486
MalI GATC 5 cut(s) 659, 804, 1478, 1593, 1966
MboI GATC 5 cut(s) 657, 802, 1476, 1591, 1964
MfeI CAATTG 2 cut(s) 1278, 1764
MhlI GDGCHC 3 cut(s) 419, 709, 1960
MlsI TGGCCA 1 cut(s) 1463
MluNI TGGCCA 1 cut(s) 1463
MlyI GAGTC 4 cut(s) 80, 1130, 1556, 1741
MmeI TCCRAC 3 cut(s) 247, 1104, 1411
Mox20I TGGCCA 1 cut(s) 1463
MroXI GAANNNNTTC 2 cut(s) 611, 1994
MscI TGGCCA 1 cut(s) 1463
MseI TTAA 9 cut(s) 177, 230, 747, 762, 1065, 1658, 1985, 2075, 2089
MslI CAYNNNNRTG 2 cut(s) 398, 1559
Msp20I TGGCCA 1 cut(s) 1463
MspA1I CMGCKG 1 cut(s) 1382
MspCI CTTAAG 2 cut(s) 746, 1657
MspI CCGG 2 cut(s) 1191, 1781
MspR9I CCNGG 1 cut(s) 1191
MunI CAATTG 2 cut(s) 1278, 1764
MwoI GCNNNNNNNGC 4 cut(s) 328, 414, 713, 925
NciI CCSGG 1 cut(s) 1191
NcoI CCATGG 2 cut(s) 1098, 2079
NdeII GATC 5 cut(s) 657, 802, 1476, 1591, 1964
NlaIV GGNNCC 2 cut(s) 730, 1850
NmuCI GTSAC 3 cut(s) 37, 72, 159
NspI RCATGY 2 cut(s) 32, 1531
NspV TTCGAA 1 cut(s) 908
PceI AGGCCT 1 cut(s) 636
PciI ACATGT 1 cut(s) 1527
PciSI GCTCTTC 1 cut(s) 8
PdmI GAANNNNTTC 2 cut(s) 611, 1994
PfeI GAWTC 2 cut(s) 209, 1512
PflFI GACNNNGTC 1 cut(s) 1751
PflMI CCANNNNNTGG 1 cut(s) 738
PkrI GCNGC 3 cut(s) 744, 918, 1503
PleI GAGTC 4 cut(s) 80, 1129, 1555, 1740
PpsI GAGTC 4 cut(s) 80, 1129, 1555, 1740
PpuMI RGGWCCY 1 cut(s) 685
PscI ACATGT 1 cut(s) 1527
PshAI GACNNNNGTC 1 cut(s) 1382
PsiI TTATAA 1 cut(s) 1430
Psp1406I AACGTT 1 cut(s) 1179
Psp5II RGGWCCY 1 cut(s) 685
PspN4I GGNNCC 2 cut(s) 730, 1850
PspPI GGNCC 3 cut(s) 7, 685, 854
PspPPI RGGWCCY 1 cut(s) 685
PsyI GACNNNGTC 1 cut(s) 1751
RsaI GTAC 3 cut(s) 182, 582, 2018
RsaNI GTAC 3 cut(s) 181, 581, 2017
RseI CAYNNNNRTG 2 cut(s) 398, 1559
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 9 cut(s) 177, 230, 747, 762, 1065, 1658, 1985, 2075, 2089
SatI GCNGC 3 cut(s) 743, 917, 1502
Sau3AI GATC 5 cut(s) 657, 802, 1476, 1591, 1964
Sau96I GGNCC 3 cut(s) 7, 685, 854
SchI GAGTC 4 cut(s) 80, 1130, 1556, 1741
ScrFI CCNGG 1 cut(s) 1191
SduI GDGCHC 3 cut(s) 419, 709, 1960
SfaNI GCATC 2 cut(s) 782, 1560
SfuI TTCGAA 1 cut(s) 908
SinI GGWCC 2 cut(s) 7, 685
SmiMI CAYNNNNRTG 2 cut(s) 398, 1559
SmlI CTYRAG 6 cut(s) 689, 746, 1657, 1802, 1826, 2031
SmoI CTYRAG 6 cut(s) 689, 746, 1657, 1802, 1826, 2031
SseBI AGGCCT 1 cut(s) 636
SsiI CCGC 3 cut(s) 921, 1380, 2048
SspI AATATT 1 cut(s) 94
SspMI CTAG 3 cut(s) 428, 863, 1868
StuI AGGCCT 1 cut(s) 636
StyD4I CCNGG 1 cut(s) 1189
StyI CCWWGG 2 cut(s) 1098, 2079
TaaI ACNGT 7 cut(s) 72, 165, 1227, 1423, 1435, 1651, 1753
TaiI ACGT 3 cut(s) 1065, 1182, 1493
TaqII GACCGA 1 cut(s) 147
TfiI GAWTC 2 cut(s) 209, 1512
Tru1I TTAA 9 cut(s) 177, 230, 747, 762, 1065, 1658, 1985, 2075, 2089
Tru9I TTAA 9 cut(s) 177, 230, 747, 762, 1065, 1658, 1985, 2075, 2089
TscAI CASTG 1 cut(s) 1756
TseFI GTSAC 3 cut(s) 37, 72, 159
TseI GCWGC 3 cut(s) 742, 916, 1501
Tsp45I GTSAC 3 cut(s) 37, 72, 159
TspGWI ACGGA 2 cut(s) 275, 339
TspRI CASTG 1 cut(s) 1756
Tth111I GACNNNGTC 1 cut(s) 1751
Van91I CCANNNNNTGG 1 cut(s) 738
Vha464I CTTAAG 2 cut(s) 746, 1657
VpaK11BI GGWCC 2 cut(s) 7, 685
XagI CCTNNNNNAGG 1 cut(s) 1871
XapI RAATTY 2 cut(s) 1690, 1992
XceI RCATGY 2 cut(s) 32, 1531
XcmI CCANNNNNNNNNTGG 1 cut(s) 1940
XmnI GAANNNNTTC 2 cut(s) 611, 1994
XspI CTAG 3 cut(s) 428, 863, 1868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.