Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007534

Physical Location & Seq

Genomic Coordinates Forward (+)

46535537 .. 46535920

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG271300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGTTCGGAAACACATGCAAGAATATATTTGAAGCTATCGTCTTTGTATTTGTAATACATCCGTTTGATGTTGGTGACCGCTGTGTTGTTGATGACGTTCCGTTGATAGTTGAGGAGATGAACATCTTTACTACAGTCTTCTTGAAGTCTAACAATGAGAAGGTATACTATCCGAATTCAGTTTTATCCACAAAAACCATCAGCAATTATTACAGAAGTTCAGATATGAAAGATACTGTGGAGTTCTCGATTGCTTTGACACCTGTGGAGAAGATAGTCAAGCTCAAAGAGAAAATTAAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0080167 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

101

Amino Acids

11.64

Weight (kDa)

5.4

Isoelectric Point (pI)

21.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MS_channel_2nd	PF00924	5 - 71	4e-11	Mechanosensitive ion channel, beta-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007534)

Species	Orthologous Gene IDs
malus_domestica	MD02G1238000.v1.1 MD02G1238200.v1.1 MD07G1078300.v1.1 MD07G1078500.v1.1
prunus_persica	Prupe.2G100800_v2.0.a1
pyrus_communis	pycom02g20350 pycom07g06210 pycom07g06220
rosa_chinensis	RchiOBHm_Chr1g0337341
rosa_laevigata	RLG00000029284
rosa_multiflora	Rmu_sc0006656.1_g000011 Rmu_sc0006824.1_g000012 Rmu_sc0006824.1_g000017 Rmu_sc0018059.1_g000005
rosa_roxburghii	Rroxscaffold_4G00314500
rosa_rugosa	Rorug01G0134500.1
rosa_samantha	Rh1AG153500 Rh1BG122800 Rh1CG144500 Rh1DG161200 Rh6AG271300 Rh6BG515500 Rh6CG521300 Rh6DG507200
rosa_wichuraiana	Rw1G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	175
AgsI	TTSAA	2 cut(s)	32, 145
AluBI	AGCT	2 cut(s)	35, 283
AluI	AGCT	2 cut(s)	35, 283
ApoI	RAATTY	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	130
BccI	CCATC	1 cut(s)	206
BfmI	CTRYAG	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	130
BsaBI	GATNNNNATC	1 cut(s)	122
Bse8I	GATNNNNATC	1 cut(s)	122
BseGI	GGATG	1 cut(s)	58
BseJI	GATNNNNATC	1 cut(s)	122
BseRI	GAGGAG	1 cut(s)	128
BspACI	CCGC	1 cut(s)	79
BssNAI	GTATAC	1 cut(s)	166
Bst1107I	GTATAC	1 cut(s)	166
Bst4CI	ACNGT	2 cut(s)	136, 238
BstEII	GGTNACC	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	18
BstPI	GGTNACC	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	132
BstV2I	GAAGAC	1 cut(s)	130
BstZ17I	GTATAC	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	58
CviAII	CATG	1 cut(s)	15
CviJI	RGCY	2 cut(s)	35, 283
CviKI_1	RGCY	2 cut(s)	35, 283
Eco91I	GGTNACC	1 cut(s)	74
EcoO65I	GGTNACC	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	175
FaeI	CATG	1 cut(s)	18
FaiI	YATR	4 cut(s)	16, 26, 166, 227
FatI	CATG	1 cut(s)	14
FblI	GTMKAC	1 cut(s)	165
FokI	GGATG	1 cut(s)	45
Hin1II	CATG	1 cut(s)	18
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	3 cut(s)	8, 174, 223
Hpy188III	TCNNGA	2 cut(s)	142, 247
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	2 cut(s)	136, 238
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	18
LpnPI	CCDG	1 cut(s)	276
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	74
MboII	GAAGA	2 cut(s)	130, 283
MluCI	AATT	3 cut(s)	175, 205, 294
MnlI	CCTC	1 cut(s)	106
MseI	TTAA	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	81
NlaIII	CATG	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	74
NspI	RCATGY	1 cut(s)	18
PspEI	GGTNACC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	297
SetI	ASST	5 cut(s)	37, 99, 165, 265, 285
SfcI	CTRYAG	1 cut(s)	132
SgeI	CNNG	6 cut(s)	27, 31, 154, 259, 275, 292
Sse9I	AATT	3 cut(s)	175, 205, 294
SsiI	CCGC	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	136, 238
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	248
TasI	AATT	3 cut(s)	175, 205, 294
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	2 cut(s)	134, 242
TspGWI	ACGGA	2 cut(s)	51, 90
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.