Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007534

Physical Location & Seq

Genomic Coordinates Forward (+)

7526020 .. 7528728

Gene Structure 2709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1078300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCAATAAATGAAATCAAAACAGCACACATTGAACTATATAGACGTACAAAGCTAACTAAATTGCAGTGTGTGTATGCCTATATTGAGCGTAAAGCATTGGCTCACTCCTTGAATGATACCAAGACCGCTGTCCAACAACTTCACAAGTTGGCGAGTGCAGTCGTAACTGTAATTATAACCGTGGTGAGCCTTTTGGTGATGGGTCTGGCCACAACTAAGGTGATCTTTGTTGTTACGTCTCAACTGCTGCTTGTGGGATTCATGTTCCAGAACATGTGCAAAACTATGTTCGAGTCCATCATCTTTGTGTTTGTGATGCACCCTTTCGATGTTGGTGATCGATGTGTGGTGGATGGCGTGCAGATGATTGTAGAAGAGATGAACATTTTATCAACCGTTTTCTTAAGATACCACAACGAGAAAATATACTACCCAAATTCCGTGCTTCTTACAAAGCCAATTAGTAATTTCAGAAGGAGTCCGGATATGGCTGACACTGTTGATTTAACAATTGATGTCTCTACTCCAGTTGATGATGTTTCTGCACTCAAGAAGTCCATACAATCATACCTTGAGAGCAAGCCGAAGTATTGGAACCAAAAACACTCAATCCTAGTGAAGGAGATAGAGAATGTGGATAAGATGAAAATGACGCTATGTGTTCAACACACCATGAACCATCAAAATTATGGGGAAAAGAGTGCTCGAAGATCAGAGCTTGTGTTCGAGTTAAAGAAAATTTTCCAAAACCTTGGCATAAAGTACCATCTTCTTCCTCAAGAAGTAACATACCGCAATTCAACACAAGCAACGGGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

275

Amino Acids

31.37

Weight (kDa)

9.11

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MS_channel_2nd	PF00924	102 - 160	1.7e-10	Mechanosensitive ion channel, beta-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007534)

Species	Orthologous Gene IDs
malus_domestica	MD02G1238000.v1.1 MD02G1238200.v1.1 MD07G1078300.v1.1 MD07G1078500.v1.1
prunus_persica	Prupe.2G100800_v2.0.a1
pyrus_communis	pycom02g20350 pycom07g06210 pycom07g06220
rosa_chinensis	RchiOBHm_Chr1g0337341
rosa_laevigata	RLG00000029284
rosa_multiflora	Rmu_sc0006656.1_g000011 Rmu_sc0006824.1_g000012 Rmu_sc0006824.1_g000017 Rmu_sc0018059.1_g000005
rosa_roxburghii	Rroxscaffold_4G00314500
rosa_rugosa	Rorug01G0134500.1
rosa_samantha	Rh1AG153500 Rh1BG122800 Rh1CG144500 Rh1DG161200 Rh6AG271300 Rh6BG515500 Rh6CG521300 Rh6DG507200
rosa_wichuraiana	Rw1G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
AccIII	TCCGGA	1 cut(s)	484
AciI	CCGC	2 cut(s)	129, 796
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	2 cut(s)	439, 741
AfaI	GTAC	2 cut(s)	49, 767
AfiI	CCNNNNNNNGG	1 cut(s)	622
AflII	CTTAAG	1 cut(s)	406
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	4 cut(s)	35, 115, 668, 804
AluBI	AGCT	2 cut(s)	55, 721
AluI	AGCT	2 cut(s)	55, 721
Alw21I	GWGCWC	1 cut(s)	709
Alw26I	GTCTC	2 cut(s)	246, 526
Aor13HI	TCCGGA	1 cut(s)	484
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	250
ApoI	RAATTY	2 cut(s)	439, 741
Asp700I	GAANNNNTTC	1 cut(s)	743
AsuHPI	GGTGA	4 cut(s)	199, 211, 235, 350
BalI	TGGCCA	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	709
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	5 cut(s)	196, 308, 350, 690, 777
BcoDI	GTCTC	2 cut(s)	246, 526
BfaI	CTAG	1 cut(s)	617
BfrI	CTTAAG	1 cut(s)	406
BisI	GCNGC	1 cut(s)	251
BlsI	GCNGC	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	599
BmsI	GCATC	1 cut(s)	309
BoxI	GACNNNNGTC	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	513
BpuEI	CTTGAG	3 cut(s)	536, 596, 765
Bsa29I	ATCGAT	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	183, 754
BsaWI	WCCGGW	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	1 cut(s)	622
Bse1I	ACTGG	1 cut(s)	530
BseAI	TCCGGA	1 cut(s)	484
BseCI	ATCGAT	1 cut(s)	343
BseDI	CCNNGG	2 cut(s)	183, 754
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	622
BseNI	ACTGG	1 cut(s)	530
BseXI	GCAGC	1 cut(s)	237
BsgI	GTGCAG	3 cut(s)	180, 383, 531
BshFI	GGCC	1 cut(s)	212
BshVI	ATCGAT	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	709
BsiSI	CCGG	1 cut(s)	485
BslI	CCNNNNNNNGG	1 cut(s)	622
BsmAI	GTCTC	2 cut(s)	246, 526
BsmBI	CGTCTC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	709
Bsp13I	TCCGGA	1 cut(s)	484
Bsp143I	GATC	3 cut(s)	225, 340, 713
BspACI	CCGC	2 cut(s)	129, 796
BspANI	GGCC	1 cut(s)	212
BspDI	ATCGAT	1 cut(s)	343
BspEI	TCCGGA	1 cut(s)	484
BspLI	GGNNCC	1 cut(s)	599
BspTI	CTTAAG	1 cut(s)	406
BsrI	ACTGG	1 cut(s)	530
BssECI	CCNNGG	2 cut(s)	183, 754
BssMI	GATC	3 cut(s)	225, 340, 713
BssT1I	CCWWGG	1 cut(s)	754
Bst4CI	ACNGT	4 cut(s)	172, 184, 400, 502
Bst6I	CTCTTC	1 cut(s)	372
BstAFI	CTTAAG	1 cut(s)	406
BstC8I	GCNNGC	2 cut(s)	362, 584
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	183
BstENI	CCTNNNNNAGG	1 cut(s)	620
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	3 cut(s)	228, 343, 716
BstMAI	GTCTC	2 cut(s)	246, 526
BstMBI	GATC	3 cut(s)	225, 340, 713
BstNSI	RCATGY	1 cut(s)	280
BstPAI	GACNNNNGTC	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	237
BstXI	CCANNNNNNTGG	1 cut(s)	755
Bsu15I	ATCGAT	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	212
BsuTUI	ATCGAT	1 cut(s)	343
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	361
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	2 cut(s)	74, 498
Cac8I	GCNNGC	2 cut(s)	362, 584
ClaI	ATCGAT	1 cut(s)	343
CseI	GACGC	1 cut(s)	664
Csp6I	GTAC	2 cut(s)	48, 766
CviAII	CATG	3 cut(s)	265, 277, 676
CviJI	RGCY	8 cut(s)	55, 104, 192, 212, 460, 494, 586, 721
CviKI_1	RGCY	8 cut(s)	55, 104, 192, 212, 460, 494, 586, 721
CviQI	GTAC	2 cut(s)	48, 766
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	3 cut(s)	227, 342, 715
DpnII	GATC	3 cut(s)	225, 340, 713
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	754
EcoNI	CCTNNNNNAGG	1 cut(s)	620
EcoT14I	CCWWGG	1 cut(s)	754
ErhI	CCWWGG	1 cut(s)	754
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	3 cut(s)	268, 280, 679
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	3 cut(s)	264, 276, 675
Fnu4HI	GCNGC	1 cut(s)	251
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	1 cut(s)	251
FspBI	CTAG	1 cut(s)	617
GluI	GCNGC	1 cut(s)	251
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	1 cut(s)	485
HgaI	GACGC	1 cut(s)	664
Hin1II	CATG	3 cut(s)	268, 280, 679
HinfI	GANTC	3 cut(s)	261, 296, 481
HpaII	CCGG	1 cut(s)	485
HphI	GGTGA	4 cut(s)	199, 211, 235, 350
Hpy188I	TCNGA	2 cut(s)	476, 718
Hpy188III	TCNNGA	4 cut(s)	271, 485, 553, 782
HpyAV	CCTTC	2 cut(s)	471, 616
HpyCH4III	ACNGT	4 cut(s)	172, 184, 400, 502
HpyCH4IV	ACGT	2 cut(s)	46, 239
HpyCH4V	TGCA	6 cut(s)	67, 161, 282, 322, 364, 548
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	2 cut(s)	46, 239
Hsp92II	CATG	3 cut(s)	268, 280, 679
Kpn2I	TCCGGA	1 cut(s)	484
Kzo9I	GATC	3 cut(s)	225, 340, 713
LpnPI	CCDG	4 cut(s)	194, 284, 498, 543
Lsp1109I	GCAGC	1 cut(s)	237
LweI	GCATC	1 cut(s)	309
MaeI	CTAG	1 cut(s)	617
MaeII	ACGT	2 cut(s)	46, 239
MaeIII	GTNAC	3 cut(s)	166, 235, 787
MalI	GATC	3 cut(s)	227, 342, 715
MboI	GATC	3 cut(s)	225, 340, 713
MboII	GAAGA	4 cut(s)	389, 723, 764, 767
MfeI	CAATTG	1 cut(s)	513
MhlI	GDGCHC	1 cut(s)	709
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	9 cut(s)	62, 174, 439, 462, 469, 513, 688, 741, 799
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	2 cut(s)	305, 490
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	2 cut(s)	789, 812
Mox20I	TGGCCA	1 cut(s)	212
MroI	TCCGGA	1 cut(s)	484
MroXI	GAANNNNTTC	1 cut(s)	743
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	4 cut(s)	407, 509, 734, 823
MslI	CAYNNNNRTG	1 cut(s)	308
Msp20I	TGGCCA	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	131
MspCI	CTTAAG	1 cut(s)	406
MspI	CCGG	1 cut(s)	485
MunI	CAATTG	1 cut(s)	513
NdeII	GATC	3 cut(s)	225, 340, 713
NlaIII	CATG	3 cut(s)	268, 280, 679
NlaIV	GGNNCC	1 cut(s)	599
NspI	RCATGY	1 cut(s)	280
PciI	ACATGT	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	743
PfeI	GAWTC	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	252
PleI	GAGTC	2 cut(s)	304, 489
PpsI	GAGTC	2 cut(s)	304, 489
PscI	ACATGT	1 cut(s)	276
PshAI	GACNNNNGTC	1 cut(s)	131
PsiI	TTATAA	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	599
RsaI	GTAC	2 cut(s)	49, 767
RsaNI	GTAC	2 cut(s)	48, 766
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	4 cut(s)	407, 509, 734, 823
SatI	GCNGC	1 cut(s)	251
Sau3AI	GATC	3 cut(s)	225, 340, 713
SchI	GAGTC	2 cut(s)	305, 490
SduI	GDGCHC	1 cut(s)	709
SetI	ASST	8 cut(s)	49, 57, 225, 242, 576, 723, 756, 823
SfaNI	GCATC	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	4 cut(s)	406, 551, 575, 780
SmoI	CTYRAG	4 cut(s)	406, 551, 575, 780
Sse9I	AATT	9 cut(s)	62, 174, 439, 462, 469, 513, 688, 741, 799
SsiI	CCGC	2 cut(s)	129, 796
SspMI	CTAG	1 cut(s)	617
StyI	CCWWGG	1 cut(s)	754
TaaI	ACNGT	4 cut(s)	172, 184, 400, 502
TaiI	ACGT	2 cut(s)	49, 242
TaqI	TCGA	5 cut(s)	294, 330, 343, 709, 729
TasI	AATT	9 cut(s)	62, 174, 439, 462, 469, 513, 688, 741, 799
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	4 cut(s)	407, 509, 734, 823
Tru9I	TTAA	4 cut(s)	407, 509, 734, 823
TscAI	CASTG	2 cut(s)	74, 505
TseI	GCWGC	1 cut(s)	250
TspDTI	ATGAA	5 cut(s)	27, 253, 398, 662, 692
TspGWI	ACGGA	1 cut(s)	433
TspRI	CASTG	2 cut(s)	74, 505
Vha464I	CTTAAG	1 cut(s)	406
XagI	CCTNNNNNAGG	1 cut(s)	620
XapI	RAATTY	2 cut(s)	439, 741
XceI	RCATGY	1 cut(s)	280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	689
XmnI	GAANNNNTTC	1 cut(s)	743
XspI	CTAG	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.