Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007534

Physical Location & Seq

Genomic Coordinates Reverse (-)

18471619 .. 18472884

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g20350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAAACTGAATCGAATCAAAACGGCACACATTGACCAATTTAGATATCCAAAGCTAATTTTATATATACGTAAAGCATTGGCTCACTCCTTGAATGACACCAAGACTGCTGTCCATCAACTTCACAAGTTGGCGAGTGCAATCGTAATTGTGATTATAACTGTGGTGACTCTTTTGGTGATGGGTCTGGCCACAACTAAGGTGATCTTTGTTGTTACTTCTCAACTGCTGCTTGTGGGATTCATGTTCCAGAACATGTGCAAAACTGTGTTCGAGTCTATCATCTTTGTGTTTGTGATGCATCCATTTGATGTTGGTGATCGTTGTGTGGTGGATGGAGTTCAGATGGTTGTAGAAGAGATGAACATTTTGTCAACCGTTTTCTTAAGATACGACAATGAAAAAATATTCTACCCCAATTCTGTGCTTCTTACAAAGCCTATTAGTAATTTCAGAAGGAGTCCAGATATGGCTGACAGTATTGATTTCACAATTGATGTCTCTACTCCTGTTGATGATGTTTCTGCACTCAAGAAGGCCATACAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

184

Amino Acids

20.72

Weight (kDa)

8.89

Isoelectric Point (pI)

28.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MS_channel_2nd	PF00924	95 - 153	3.6e-11	Mechanosensitive ion channel, beta-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007534)

Species	Orthologous Gene IDs
malus_domestica	MD02G1238000.v1.1 MD02G1238200.v1.1 MD07G1078300.v1.1 MD07G1078500.v1.1
prunus_persica	Prupe.2G100800_v2.0.a1
pyrus_communis	pycom02g20350 pycom07g06210 pycom07g06220
rosa_chinensis	RchiOBHm_Chr1g0337341
rosa_laevigata	RLG00000029284
rosa_multiflora	Rmu_sc0006656.1_g000011 Rmu_sc0006824.1_g000012 Rmu_sc0006824.1_g000017 Rmu_sc0018059.1_g000005
rosa_roxburghii	Rroxscaffold_4G00314500
rosa_rugosa	Rorug01G0134500.1
rosa_samantha	Rh1AG153500 Rh1BG122800 Rh1CG144500 Rh1DG161200 Rh6AG271300 Rh6BG515500 Rh6CG521300 Rh6DG507200
rosa_wichuraiana	Rw1G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	189
AflII	CTTAAG	1 cut(s)	385
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw26I	GTCTC	1 cut(s)	505
AoxI	GGCC	2 cut(s)	189, 537
ApeKI	GCWGC	1 cut(s)	229
AsuHPI	GGTGA	4 cut(s)	178, 190, 214, 329
BalI	TGGCCA	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	4 cut(s)	123, 175, 329, 340
BceAI	ACGGC	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	505
BfrI	CTTAAG	1 cut(s)	385
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
BmsI	GCATC	2 cut(s)	288, 310
BoxI	GACNNNNGTC	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	515
BsaAI	YACGTR	1 cut(s)	71
BseGI	GGATG	2 cut(s)	301, 340
BseXI	GCAGC	1 cut(s)	216
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	2 cut(s)	191, 539
BsmAI	GTCTC	1 cut(s)	505
BsnI	GGCC	2 cut(s)	191, 539
Bsp143I	GATC	2 cut(s)	204, 319
BspANI	GGCC	2 cut(s)	191, 539
BspTI	CTTAAG	1 cut(s)	385
BssMI	GATC	2 cut(s)	204, 319
Bst4CI	ACNGT	4 cut(s)	163, 268, 379, 479
Bst6I	CTCTTC	1 cut(s)	351
BstAFI	CTTAAG	1 cut(s)	385
BstBAI	YACGTR	1 cut(s)	71
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	301, 340
BstKTI	GATC	2 cut(s)	207, 322
BstMAI	GTCTC	1 cut(s)	505
BstMBI	GATC	2 cut(s)	204, 319
BstNSI	RCATGY	1 cut(s)	259
BstPAI	GACNNNNGTC	1 cut(s)	110
BstSNI	TACGTA	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	216
BsuRI	GGCC	2 cut(s)	191, 539
BtsCI	GGATG	2 cut(s)	301, 340
CviAII	CATG	2 cut(s)	244, 256
CviJI	RGCY	6 cut(s)	55, 83, 191, 439, 473, 539
CviKI_1	RGCY	6 cut(s)	55, 83, 191, 439, 473, 539
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	2 cut(s)	206, 321
DpnII	GATC	2 cut(s)	204, 319
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco105I	TACGTA	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	47
EcoRV	GATATC	1 cut(s)	47
EcoT22I	ATGCAT	1 cut(s)	303
FaeI	CATG	2 cut(s)	247, 259
FaiI	YATR	8 cut(s)	64, 66, 68, 158, 245, 257, 470, 542
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FatI	CATG	2 cut(s)	243, 255
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	2 cut(s)	288, 347
Fsp4HI	GCNGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	230
HaeIII	GGCC	2 cut(s)	191, 539
Hin1II	CATG	2 cut(s)	247, 259
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	6 cut(s)	10, 15, 169, 240, 275, 460
HphI	GGTGA	4 cut(s)	178, 190, 214, 329
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	2 cut(s)	345, 455
Hpy188III	TCNNGA	3 cut(s)	250, 464, 532
Hpy8I	GTNNAC	1 cut(s)	375
HpyAV	CCTTC	2 cut(s)	450, 529
HpyCH4III	ACNGT	4 cut(s)	163, 268, 379, 479
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	4 cut(s)	140, 261, 301, 527
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	2 cut(s)	247, 259
Kzo9I	GATC	2 cut(s)	204, 319
LpnPI	CCDG	4 cut(s)	173, 263, 477, 522
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	2 cut(s)	288, 310
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	2 cut(s)	166, 214
MalI	GATC	2 cut(s)	206, 321
MboI	GATC	2 cut(s)	204, 319
MboII	GAAGA	1 cut(s)	368
MfeI	CAATTG	2 cut(s)	492, 545
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	7 cut(s)	38, 57, 147, 418, 448, 492, 545
MluNI	TGGCCA	1 cut(s)	191
MlyI	GAGTC	3 cut(s)	163, 284, 469
Mox20I	TGGCCA	1 cut(s)	191
Mph1103I	ATGCAT	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	1 cut(s)	386
MslI	CAYNNNNRTG	1 cut(s)	287
Msp20I	TGGCCA	1 cut(s)	191
MspCI	CTTAAG	1 cut(s)	385
MunI	CAATTG	2 cut(s)	492, 545
NdeII	GATC	2 cut(s)	204, 319
NlaIII	CATG	2 cut(s)	247, 259
NmuCI	GTSAC	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	303
NspI	RCATGY	1 cut(s)	259
PciI	ACATGT	1 cut(s)	255
PfeI	GAWTC	3 cut(s)	10, 15, 240
PkrI	GCNGC	1 cut(s)	231
PleI	GAGTC	3 cut(s)	163, 283, 468
PpsI	GAGTC	3 cut(s)	163, 283, 468
Ppu21I	YACGTR	1 cut(s)	71
PscI	ACATGT	1 cut(s)	255
PshAI	GACNNNNGTC	1 cut(s)	110
PsiI	TTATAA	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	2 cut(s)	204, 319
SchI	GAGTC	3 cut(s)	163, 284, 469
SetI	ASST	3 cut(s)	57, 73, 204
SfaNI	GCATC	2 cut(s)	288, 310
SmiMI	CAYNNNNRTG	1 cut(s)	287
SmlI	CTYRAG	2 cut(s)	385, 530
SmoI	CTYRAG	2 cut(s)	385, 530
SnaBI	TACGTA	1 cut(s)	71
Sse9I	AATT	7 cut(s)	38, 57, 147, 418, 448, 492, 545
SspI	AATATT	1 cut(s)	408
TaaI	ACNGT	4 cut(s)	163, 268, 379, 479
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	2 cut(s)	13, 273
TasI	AATT	7 cut(s)	38, 57, 147, 418, 448, 492, 545
TfiI	GAWTC	3 cut(s)	10, 15, 240
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	4 cut(s)	17, 232, 377, 414
Vha464I	CTTAAG	1 cut(s)	385
XceI	RCATGY	1 cut(s)	259
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.