Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007534

Physical Location & Seq

Genomic Coordinates Reverse (-)

70961261 .. 70971734

Gene Structure 10474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG515500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAAGCACAAATCAGGTACATTGAGGAGTGGGATCTCTTGAGGTTCATGATCGAGGAAGAGGTAGAACTTGTATGGCCGCGGATTGACGTAGCAAAGACCGGACAAGTTGACAGACAAACTCTGACAGACTGGGTGGTGAAGCTTTACACTGATCGCAAAGCATTAGCTCATGCATTGTCTGATACCAAAGCAGTTACAGCGCAAGTCAACAATCTTCTTTTGCTTTCGGAAACACTTGCAAGAATGTATTTGAATCTATCATGTTCTATTTGTGGCGCATCCATATATATGATGTTGGTGAATGGTGACTGCATTGTTTTTGAAGGCGTTCCGATGATAGTTGAAGAGATGAACACCTTTACTACGGTTTTCTTGAAACTCAGTAACAACGAGAAGGTGTACTATCCGAATTCAGTTTTATCTGCAACATCGATCAGCAATTACTCCAGAAGTCCAGATATGAGAGATGCTGTAGAGTTCTCAATTGCTTTAACACCAGTGGAGAAGATAGTCAAGTTGAAAGAAAAAATAAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

180

Amino Acids

20.57

Weight (kDa)

4.97

Isoelectric Point (pI)

24.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007534)

Species	Orthologous Gene IDs
malus_domestica	MD02G1238000.v1.1 MD02G1238200.v1.1 MD07G1078300.v1.1 MD07G1078500.v1.1
prunus_persica	Prupe.2G100800_v2.0.a1
pyrus_communis	pycom02g20350 pycom07g06210 pycom07g06220
rosa_chinensis	RchiOBHm_Chr1g0337341
rosa_laevigata	RLG00000029284
rosa_multiflora	Rmu_sc0006656.1_g000011 Rmu_sc0006824.1_g000012 Rmu_sc0006824.1_g000017 Rmu_sc0018059.1_g000005
rosa_roxburghii	Rroxscaffold_4G00314500
rosa_rugosa	Rorug01G0134500.1
rosa_samantha	Rh1AG153500 Rh1BG122800 Rh1CG144500 Rh1DG161200 Rh6AG271300 Rh6BG515500 Rh6CG521300 Rh6DG507200
rosa_wichuraiana	Rw1G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	82
AciI	CCGC	2 cut(s)	80, 82
AclWI	GGATC	1 cut(s)	42
AcoI	YGGCCR	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	412
AfaI	GTAC	2 cut(s)	20, 404
AgsI	TTSAA	5 cut(s)	256, 326, 347, 379, 523
AluBI	AGCT	2 cut(s)	145, 170
AluI	AGCT	2 cut(s)	145, 170
AlwI	GGATC	1 cut(s)	42
AoxI	GGCC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	412
Asp700I	GAANNNNTTC	1 cut(s)	330
AspLEI	GCGC	2 cut(s)	205, 281
AsuHPI	GGTGA	3 cut(s)	151, 313, 320
BfmI	CTRYAG	1 cut(s)	474
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	2 cut(s)	290, 460
BmuI	ACTGGG	1 cut(s)	142
BpmI	CTGGAG	1 cut(s)	433
BpuEI	CTTGAG	1 cut(s)	61
Bsa29I	ATCGAT	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	80
BsaWI	WCCGGW	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	137, 500
BseCI	ATCGAT	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	397
BseNI	ACTGG	2 cut(s)	137, 500
BseRI	GAGGAG	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	79
BshVI	ATCGAT	1 cut(s)	434
BsiSI	CCGG	1 cut(s)	102
BsnI	GGCC	1 cut(s)	79
Bsp143I	GATC	4 cut(s)	34, 51, 154, 435
BspACI	CCGC	2 cut(s)	80, 82
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	396
BspDI	ATCGAT	1 cut(s)	434
BspFNI	CGCG	1 cut(s)	82
BspHI	TCATGA	1 cut(s)	48
BspPI	GGATC	1 cut(s)	42
BsrI	ACTGG	2 cut(s)	137, 500
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	4 cut(s)	34, 51, 154, 435
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	2 cut(s)	54, 342
BstDEI	CTNAG	1 cut(s)	383
BstDSI	CCRYGG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	281
BstFNI	CGCG	1 cut(s)	82
BstHHI	GCGC	2 cut(s)	205, 281
BstKTI	GATC	4 cut(s)	37, 54, 157, 438
BstMBI	GATC	4 cut(s)	34, 51, 154, 435
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstSFI	CTRYAG	1 cut(s)	474
BstUI	CGCG	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
Bsu15I	ATCGAT	1 cut(s)	434
BsuRI	GGCC	1 cut(s)	79
BsuTUI	ATCGAT	1 cut(s)	434
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	281
BtsIMutI	CAGTG	2 cut(s)	150, 507
CciI	TCATGA	1 cut(s)	48
CfoI	GCGC	2 cut(s)	205, 281
Cfr42I	CCGCGG	1 cut(s)	83
ClaI	ATCGAT	1 cut(s)	434
Csp6I	GTAC	2 cut(s)	19, 403
CviAII	CATG	3 cut(s)	49, 173, 264
CviJI	RGCY	3 cut(s)	79, 145, 170
CviKI_1	RGCY	3 cut(s)	79, 145, 170
CviQI	GTAC	2 cut(s)	19, 403
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	4 cut(s)	36, 53, 156, 437
DpnII	GATC	4 cut(s)	34, 51, 154, 435
EaeI	YGGCCR	1 cut(s)	77
Eam1104I	CTCTTC	2 cut(s)	54, 342
EarI	CTCTTC	2 cut(s)	54, 342
EcoRI	GAATTC	1 cut(s)	412
EcoT22I	ATGCAT	1 cut(s)	178
FaeI	CATG	3 cut(s)	52, 176, 267
FaiI	YATR	9 cut(s)	50, 76, 174, 265, 287, 289, 291, 293, 464
FatI	CATG	3 cut(s)	48, 172, 263
Fnu4HI	GCNGC	1 cut(s)	80
FokI	GGATG	1 cut(s)	268
Fsp4HI	GCNGC	1 cut(s)	80
GlaI	GCGC	2 cut(s)	204, 280
GluI	GCNGC	1 cut(s)	80
GsuI	CTGGAG	1 cut(s)	433
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	2 cut(s)	205, 281
Hin1II	CATG	3 cut(s)	52, 176, 267
Hin6I	GCGC	2 cut(s)	203, 279
HinP1I	GCGC	2 cut(s)	203, 279
HincII	GTYRAC	2 cut(s)	112, 211
HindII	GTYRAC	2 cut(s)	112, 211
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	3 cut(s)	151, 313, 320
Hpy166II	GTNNAC	3 cut(s)	112, 211, 403
Hpy188I	TCNGA	5 cut(s)	126, 184, 232, 336, 411
Hpy188III	TCNNGA	5 cut(s)	40, 49, 376, 450, 458
Hpy8I	GTNNAC	3 cut(s)	112, 211, 403
HpyAV	CCTTC	2 cut(s)	320, 391
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	4 cut(s)	176, 242, 315, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	383
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	52, 176, 267
HspAI	GCGC	2 cut(s)	203, 279
KspI	CCGCGG	1 cut(s)	83
Kzo9I	GATC	4 cut(s)	34, 51, 154, 435
LpnPI	CCDG	5 cut(s)	115, 118, 463, 471, 513
LweI	GCATC	2 cut(s)	290, 460
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	3 cut(s)	196, 308, 386
MalI	GATC	4 cut(s)	36, 53, 156, 437
MboI	GATC	4 cut(s)	34, 51, 154, 435
MboII	GAAGA	4 cut(s)	71, 209, 359, 520
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	1 cut(s)	34
MluCI	AATT	3 cut(s)	412, 442, 486
MnlI	CCTC	4 cut(s)	19, 36, 49, 55
Mph1103I	ATGCAT	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	1 cut(s)	494
MslI	CAYNNNNRTG	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	1 cut(s)	102
MunI	CAATTG	1 cut(s)	486
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	4 cut(s)	34, 51, 154, 435
NlaIII	CATG	3 cut(s)	52, 176, 267
NmuCI	GTSAC	1 cut(s)	308
NsiI	ATGCAT	1 cut(s)	178
PagI	TCATGA	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	34
RsaI	GTAC	2 cut(s)	20, 404
RsaNI	GTAC	2 cut(s)	19, 403
RseI	CAYNNNNRTG	1 cut(s)	290
SacII	CCGCGG	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	1 cut(s)	80
Sau3AI	GATC	4 cut(s)	34, 51, 154, 435
SetI	ASST	8 cut(s)	20, 47, 66, 93, 147, 172, 362, 402
SfaNI	GCATC	2 cut(s)	290, 460
SfcI	CTRYAG	1 cut(s)	474
Sfr303I	CCGCGG	1 cut(s)	83
SgrBI	CCGCGG	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
Sse9I	AATT	3 cut(s)	412, 442, 486
SsiI	CCGC	2 cut(s)	80, 82
TaaI	ACNGT	1 cut(s)	370
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	2 cut(s)	54, 434
TasI	AATT	3 cut(s)	412, 442, 486
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	2 cut(s)	157, 507
TseFI	GTSAC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	2 cut(s)	37, 368
TspRI	CASTG	2 cut(s)	157, 507
XapI	RAATTY	1 cut(s)	412
XmnI	GAANNNNTTC	1 cut(s)	330
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.