Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006824.1

Orthogroup ID

OG0007534

Physical Location & Seq

Genomic Coordinates Reverse (-)

86134 .. 87348

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006824.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atggagttccaaaagagcaatatagaccatgtggtagtaagcatagaccaaccaagccccaaactcaaccagtcaccccaagcagactcaatcccacaatcaccacagtcaaaagccaaaacccttagacgcctcaacttttccaaaccccggtcacggttcgaggagaataagcatcctgtgacaccaagaaccattctccaatccgaagaacacgagcccttaaacactaacgaagacaactactcgtcctcatcagatgatgaagaatggttcgaaaatgaagaagacgaccaagaagaagggggaaacaaacgcaagcaagggaacaaaaggaagagaaagatgaacaagagagctctgatagagtggactttgtttctcataataatgacttgcttggtgtgttccctgactgtagattcccttaaacacgaaatgaaatggggtttgcaggtatggaaatggtgcctaatggtcttggttatgttttgtgggcgcttagtctcgggttgggttgtggggttcattgtctttcttatagagagaaacttcatgcttagagaaaaagtactctactttgtgtttggtctgcgcaagagtttccaaaattgtgcttggctagccctagttttagtggcttgggtgatcatgttccctcatgtcgacaaacaaagcaaggttcttaaaaaagtttttcgagccctcatcgccgtgctgatcggcgccacgatttggttgctaaagatcgtttttgtcaaggtgttggcctcttcatttcacgtagctacattctttgaccgtatgaaagagagtgtattccaccacttcattttggatgccctgtccgggccgccaatggatctggaggagagggagcacctttcgcagcgtcgtttgcaggcttccaagacattgccggcgaggttgaggagggataagtctagccagttgaccaagtcgaggtcttgtaagcaagatgggtcgaggaggattgacatggagaagctcaagaagttgagcatgccgggtagggcaacggcgtggagtgtgaagaggctggtgagctatgtcaggtcttcaggtttgtcgacaatggtttcaagtacgatggatgatttcggcaatacggaatcggagattacgagtgaatgggaggcgaggaacagtgctcaaagaatattcaagaatgttgccaagcctggtgccaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

404

Amino Acids

46.72

Weight (kDa)

9.71

Isoelectric Point (pI)

59.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007534)

Species	Orthologous Gene IDs
malus_domestica	MD02G1238000.v1.1 MD02G1238200.v1.1 MD07G1078300.v1.1 MD07G1078500.v1.1
prunus_persica	Prupe.2G100800_v2.0.a1
pyrus_communis	pycom02g20350 pycom07g06210 pycom07g06220
rosa_chinensis	RchiOBHm_Chr1g0337341
rosa_laevigata	RLG00000029284
rosa_multiflora	Rmu_sc0006656.1_g000011 Rmu_sc0006824.1_g000012 Rmu_sc0006824.1_g000017 Rmu_sc0018059.1_g000005
rosa_roxburghii	Rroxscaffold_4G00314500
rosa_rugosa	Rorug01G0134500.1
rosa_samantha	Rh1AG153500 Rh1BG122800 Rh1CG144500 Rh1DG161200 Rh6AG271300 Rh6BG515500 Rh6CG521300 Rh6DG507200
rosa_wichuraiana	Rw1G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	596
Acc36I	ACCTGC	1 cut(s)	445
AccB1I	GGYRCC	3 cut(s)	468, 725, 1205
AccB7I	CCANNNNNTGG	1 cut(s)	735
AccI	GTMKAC	2 cut(s)	666, 1091
AciI	CCGC	1 cut(s)	854
AclWI	GGATC	1 cut(s)	870
AcuI	CTGAAG	1 cut(s)	1065
AcyI	GRCGYC	2 cut(s)	130, 726
AfaI	GTAC	2 cut(s)	573, 1108
AfiI	CCNNNNNNNGG	5 cut(s)	150, 156, 735, 849, 963
AgsI	TTSAA	2 cut(s)	1104, 1186
AjnI	CCWGG	1 cut(s)	1201
AluBI	AGCT	4 cut(s)	359, 788, 1009, 1068
AluI	AGCT	4 cut(s)	359, 788, 1009, 1068
Alw21I	GWGCWC	3 cut(s)	361, 882, 1174
Alw26I	GTCTC	1 cut(s)	511
AlwI	GGATC	1 cut(s)	870
Ama87I	CYCGRG	1 cut(s)	508
AoxI	GGCC	2 cut(s)	768, 851
ApeKI	GCWGC	1 cut(s)	889
AspLEI	GCGC	3 cut(s)	501, 597, 728
AspS9I	GGNCC	1 cut(s)	851
AsuC2I	CCSGG	3 cut(s)	151, 850, 1029
AsuHPI	GGTGA	4 cut(s)	66, 93, 658, 1075
AsuII	TTCGAA	1 cut(s)	276
AsuNHI	GCTAGC	1 cut(s)	622
AvaI	CYCGRG	1 cut(s)	508
BanI	GGYRCC	3 cut(s)	468, 725, 1205
BanII	GRGCYC	3 cut(s)	222, 361, 706
BauI	CACGAG	1 cut(s)	215
BbsI	GAAGAC	3 cut(s)	243, 294, 1071
Bbv12I	GWGCWC	3 cut(s)	361, 882, 1174
BbvI	GCAGC	1 cut(s)	901
BccI	CCATC	2 cut(s)	974, 1105
BceAI	ACGGC	2 cut(s)	698, 1056
BcgI	CGANNNNNNTGC	2 cut(s)	721, 755
BciT130I	CCWGG	1 cut(s)	1203
BclI	TGATCA	1 cut(s)	648
BcnI	CCSGG	3 cut(s)	151, 850, 1029
BcoDI	GTCTC	1 cut(s)	511
BfaI	CTAG	3 cut(s)	623, 629, 945
BfmI	CTRYAG	1 cut(s)	417
BfoI	RGCGCY	2 cut(s)	502, 729
BfuAI	ACCTGC	1 cut(s)	445
BisI	GCNGC	2 cut(s)	854, 890
BlsI	GCNGC	2 cut(s)	855, 891
BmcAI	AGTACT	1 cut(s)	573
Bme1390I	CCNGG	4 cut(s)	151, 850, 1029, 1203
BmeT110I	CYCGRG	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	851
BmiI	GGNNCC	3 cut(s)	470, 727, 1207
BmrFI	CCNGG	4 cut(s)	151, 850, 1029, 1203
BmsI	GCATC	2 cut(s)	184, 829
BmtI	GCTAGC	1 cut(s)	626
BpiI	GAAGAC	3 cut(s)	243, 294, 1071
BpmI	CTGGAG	1 cut(s)	887
Bpu14I	TTCGAA	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	995
BpuMI	CCSGG	3 cut(s)	151, 850, 1029
BsaAI	YACGTR	1 cut(s)	784
BsaHI	GRCGYC	2 cut(s)	130, 726
BsaJI	CCNNGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	5 cut(s)	150, 156, 735, 849, 963
Bse118I	RCCGGY	1 cut(s)	919
Bse1I	ACTGG	2 cut(s)	70, 949
Bse3DI	GCAATG	1 cut(s)	914
BseBI	CCWGG	1 cut(s)	1203
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	3 cut(s)	175, 844, 1120
BseLI	CCNNNNNNNGG	5 cut(s)	150, 156, 735, 849, 963
BseMI	GCAATG	1 cut(s)	914
BseNI	ACTGG	2 cut(s)	70, 949
BseRI	GAGGAG	4 cut(s)	179, 884, 946, 1003
BseXI	GCAGC	1 cut(s)	901
BshFI	GGCC	2 cut(s)	770, 853
BshNI	GGYRCC	3 cut(s)	468, 725, 1205
BsiHKAI	GWGCWC	3 cut(s)	361, 882, 1174
BsiHKCI	CYCGRG	1 cut(s)	508
BsiSI	CCGG	4 cut(s)	151, 849, 920, 1028
BslI	CCNNNNNNNGG	5 cut(s)	150, 156, 735, 849, 963
BsmAI	GTCTC	1 cut(s)	511
BsnI	GGCC	2 cut(s)	770, 853
BsoBI	CYCGRG	1 cut(s)	508
Bsp119I	TTCGAA	1 cut(s)	276
Bsp1286I	GDGCHC	5 cut(s)	222, 361, 706, 882, 1174
Bsp143I	GATC	4 cut(s)	648, 720, 747, 862
BspACI	CCGC	1 cut(s)	854
BspANI	GGCC	2 cut(s)	770, 853
BspLI	GGNNCC	3 cut(s)	470, 727, 1207
BspMI	ACCTGC	1 cut(s)	445
BspOI	GCTAGC	1 cut(s)	626
BspPI	GGATC	1 cut(s)	870
BspT104I	TTCGAA	1 cut(s)	276
BspT107I	GGYRCC	3 cut(s)	468, 725, 1205
BsrDI	GCAATG	1 cut(s)	914
BsrFI	RCCGGY	1 cut(s)	919
BsrI	ACTGG	2 cut(s)	70, 949
BssAI	RCCGGY	1 cut(s)	919
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	4 cut(s)	648, 720, 747, 862
BssNI	GRCGYC	2 cut(s)	130, 726
BssSI	CACGAG	1 cut(s)	215
Bst2BI	CACGAG	1 cut(s)	215
Bst2UI	CCWGG	1 cut(s)	1203
Bst4CI	ACNGT	5 cut(s)	108, 159, 418, 803, 1169
Bst6I	CTCTTC	3 cut(s)	332, 778, 1049
BstACI	GRCGYC	2 cut(s)	130, 726
BstBAI	YACGTR	1 cut(s)	784
BstBI	TTCGAA	1 cut(s)	276
BstC8I	GCNNGC	5 cut(s)	320, 624, 903, 921, 1025
BstDEI	CTNAG	3 cut(s)	125, 502, 560
BstF5I	GGATG	3 cut(s)	175, 844, 1120
BstH2I	RGCGCY	2 cut(s)	502, 729
BstHHI	GCGC	3 cut(s)	501, 597, 728
BstKTI	GATC	4 cut(s)	651, 723, 750, 865
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	4 cut(s)	648, 720, 747, 862
BstMWI	GCNNNNNNNGC	4 cut(s)	623, 710, 886, 898
BstNI	CCWGG	1 cut(s)	1203
BstNSI	RCATGY	1 cut(s)	1027
BstSCI	CCNGG	4 cut(s)	149, 848, 1027, 1201
BstSFI	CTRYAG	1 cut(s)	417
BstV1I	GCAGC	1 cut(s)	901
BstV2I	GAAGAC	3 cut(s)	243, 294, 1071
BstX2I	RGATCY	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	862
BsuRI	GGCC	2 cut(s)	770, 853
BtgZI	GCGATG	1 cut(s)	694
BtsCI	GGATG	3 cut(s)	175, 844, 1120
BtsIMutI	CAGTG	1 cut(s)	1174
BveI	ACCTGC	1 cut(s)	445
Cac8I	GCNNGC	5 cut(s)	320, 624, 903, 921, 1025
CfoI	GCGC	3 cut(s)	501, 597, 728
Cfr10I	RCCGGY	1 cut(s)	919
Cfr13I	GGNCC	1 cut(s)	851
CseI	GACGC	2 cut(s)	138, 881
Csp6I	GTAC	2 cut(s)	572, 1107
CviAII	CATG	6 cut(s)	29, 556, 652, 662, 1000, 1024
CviQI	GTAC	2 cut(s)	572, 1107
DdeI	CTNAG	3 cut(s)	125, 502, 560
DinI	GGCGCC	1 cut(s)	727
DpnI	GATC	4 cut(s)	650, 722, 749, 864
DpnII	GATC	4 cut(s)	648, 720, 747, 862
Eam1104I	CTCTTC	3 cut(s)	332, 778, 1049
EarI	CTCTTC	3 cut(s)	332, 778, 1049
Ecl136II	GAGCTC	1 cut(s)	359
Eco24I	GRGCYC	3 cut(s)	222, 361, 706
Eco53kI	GAGCTC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	1065
Eco88I	CYCGRG	1 cut(s)	508
EcoICRI	GAGCTC	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	1201
EcoT38I	GRGCYC	3 cut(s)	222, 361, 706
EgeI	GGCGCC	1 cut(s)	727
EheI	GGCGCC	1 cut(s)	727
FaeI	CATG	6 cut(s)	32, 559, 655, 665, 1003, 1027
FatI	CATG	6 cut(s)	28, 555, 651, 661, 999, 1023
FbaI	TGATCA	1 cut(s)	648
FblI	GTMKAC	2 cut(s)	666, 1091
Fnu4HI	GCNGC	2 cut(s)	854, 890
FokI	GGATG	3 cut(s)	162, 851, 1127
FriOI	GRGCYC	3 cut(s)	222, 361, 706
Fsp4HI	GCNGC	2 cut(s)	854, 890
FspBI	CTAG	3 cut(s)	623, 629, 945
FspI	TGCGCA	1 cut(s)	596
GlaI	GCGC	3 cut(s)	500, 596, 727
GluI	GCNGC	2 cut(s)	854, 890
GsuI	CTGGAG	1 cut(s)	887
HaeII	RGCGCY	2 cut(s)	502, 729
HaeIII	GGCC	2 cut(s)	770, 853
HapII	CCGG	4 cut(s)	151, 849, 920, 1028
HgaI	GACGC	2 cut(s)	138, 881
HhaI	GCGC	3 cut(s)	501, 597, 728
Hin1I	GRCGYC	2 cut(s)	130, 726
Hin1II	CATG	6 cut(s)	32, 559, 655, 665, 1003, 1027
Hin6I	GCGC	3 cut(s)	499, 595, 726
HinP1I	GCGC	3 cut(s)	499, 595, 726
HincII	GTYRAC	3 cut(s)	667, 954, 1092
HindII	GTYRAC	3 cut(s)	667, 954, 1092
HinfI	GANTC	3 cut(s)	86, 422, 1133
HpaII	CCGG	4 cut(s)	151, 849, 920, 1028
HphI	GGTGA	4 cut(s)	66, 93, 658, 1075
Hpy166II	GTNNAC	4 cut(s)	372, 667, 954, 1092
Hpy188I	TCNGA	4 cut(s)	208, 259, 363, 1138
Hpy188III	TCNNGA	3 cut(s)	866, 1012, 1186
Hpy8I	GTNNAC	4 cut(s)	372, 667, 954, 1092
Hpy99I	CGWCG	1 cut(s)	897
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	5 cut(s)	108, 159, 418, 803, 1169
HpyCH4IV	ACGT	1 cut(s)	783
HpyCH4V	TGCA	2 cut(s)	454, 901
HpyF10VI	GCNNNNNNNGC	4 cut(s)	623, 710, 886, 898
HpyF3I	CTNAG	3 cut(s)	125, 502, 560
HpySE526I	ACGT	1 cut(s)	783
Hsp92I	GRCGYC	2 cut(s)	130, 726
Hsp92II	CATG	6 cut(s)	32, 559, 655, 665, 1003, 1027
HspAI	GCGC	3 cut(s)	499, 595, 726
KasI	GGCGCC	1 cut(s)	725
KroI	GCCGGC	1 cut(s)	919
KroNI	GCCGGC	1 cut(s)	921
Ksp22I	TGATCA	1 cut(s)	648
Kzo9I	GATC	4 cut(s)	648, 720, 747, 862
LmnI	GCTCC	1 cut(s)	877
Lsp1109I	GCAGC	1 cut(s)	901
LweI	GCATC	2 cut(s)	184, 829
MaeI	CTAG	3 cut(s)	623, 629, 945
MaeII	ACGT	1 cut(s)	783
MaeIII	GTNAC	3 cut(s)	72, 153, 181
MalI	GATC	4 cut(s)	650, 722, 749, 864
MboI	GATC	4 cut(s)	648, 720, 747, 862
MflI	RGATCY	1 cut(s)	862
MhlI	GDGCHC	5 cut(s)	222, 361, 706, 882, 1174
MluCI	AATT	1 cut(s)	610
Mly113I	GGCGCC	1 cut(s)	726
MlyI	GAGTC	1 cut(s)	80
MroNI	GCCGGC	1 cut(s)	919
MseI	TTAA	3 cut(s)	224, 429, 687
MslI	CAYNNNNRTG	2 cut(s)	389, 713
MspI	CCGG	4 cut(s)	151, 849, 920, 1028
MspR9I	CCNGG	4 cut(s)	151, 850, 1029, 1203
MvaI	CCWGG	1 cut(s)	1203
MwoI	GCNNNNNNNGC	4 cut(s)	623, 710, 886, 898
NaeI	GCCGGC	1 cut(s)	921
NarI	GGCGCC	1 cut(s)	726
NciI	CCSGG	3 cut(s)	151, 850, 1029
NdeII	GATC	4 cut(s)	648, 720, 747, 862
NgoMIV	GCCGGC	1 cut(s)	919
NheI	GCTAGC	1 cut(s)	622
NlaIII	CATG	6 cut(s)	32, 559, 655, 665, 1003, 1027
NlaIV	GGNNCC	3 cut(s)	470, 727, 1207
NmuCI	GTSAC	3 cut(s)	72, 153, 181
NsbI	TGCGCA	1 cut(s)	596
NspI	RCATGY	1 cut(s)	1027
NspV	TTCGAA	1 cut(s)	276
PaeI	GCATGC	1 cut(s)	1027
PcsI	WCGNNNNNNNCGW	1 cut(s)	1142
PdiI	GCCGGC	1 cut(s)	921
PfeI	GAWTC	2 cut(s)	422, 1133
PflFI	GACNNNGTC	1 cut(s)	958
PflMI	CCANNNNNTGG	1 cut(s)	735
PkrI	GCNGC	2 cut(s)	855, 891
PleI	GAGTC	1 cut(s)	80
PluTI	GGCGCC	1 cut(s)	729
PpsI	GAGTC	1 cut(s)	80
Ppu21I	YACGTR	1 cut(s)	784
Psp124BI	GAGCTC	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	1201
PspGI	CCWGG	1 cut(s)	1201
PspN4I	GGNNCC	3 cut(s)	470, 727, 1207
PspPI	GGNCC	1 cut(s)	851
PsuI	RGATCY	1 cut(s)	862
PsyI	GACNNNGTC	1 cut(s)	958
RsaI	GTAC	2 cut(s)	573, 1108
RsaNI	GTAC	2 cut(s)	572, 1107
RseI	CAYNNNNRTG	2 cut(s)	389, 713
SacI	GAGCTC	1 cut(s)	361
SalI	GTCGAC	2 cut(s)	665, 1090
SaqAI	TTAA	3 cut(s)	224, 429, 687
SatI	GCNGC	2 cut(s)	854, 890
Sau3AI	GATC	4 cut(s)	648, 720, 747, 862
Sau96I	GGNCC	1 cut(s)	851
ScaI	AGTACT	1 cut(s)	573
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	4 cut(s)	151, 850, 1029, 1203
SduI	GDGCHC	5 cut(s)	222, 361, 706, 882, 1174
SfaNI	GCATC	2 cut(s)	184, 829
SfcI	CTRYAG	1 cut(s)	417
SfoI	GGCGCC	1 cut(s)	727
SfuI	TTCGAA	1 cut(s)	276
SmiMI	CAYNNNNRTG	2 cut(s)	389, 713
SmlI	CTYRAG	1 cut(s)	1010
SmoI	CTYRAG	1 cut(s)	1010
SphI	GCATGC	1 cut(s)	1027
Sse9I	AATT	1 cut(s)	610
SsiI	CCGC	1 cut(s)	854
SspDI	GGCGCC	1 cut(s)	725
SspI	AATATT	1 cut(s)	1182
SspMI	CTAG	3 cut(s)	623, 629, 945
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	4 cut(s)	149, 848, 1027, 1201
TaaI	ACNGT	5 cut(s)	108, 159, 418, 803, 1169
TaiI	ACGT	1 cut(s)	786
TaqI	TCGA	7 cut(s)	162, 276, 666, 700, 962, 986, 1091
TasI	AATT	1 cut(s)	610
TatI	WGTACW	1 cut(s)	571
TauI	GCSGC	1 cut(s)	856
TfiI	GAWTC	2 cut(s)	422, 1133
Tru1I	TTAA	3 cut(s)	224, 429, 687
Tru9I	TTAA	3 cut(s)	224, 429, 687
TscAI	CASTG	1 cut(s)	1174
TseFI	GTSAC	3 cut(s)	72, 153, 181
TseI	GCWGC	1 cut(s)	889
Tsp45I	GTSAC	3 cut(s)	72, 153, 181
TspDTI	ATGAA	9 cut(s)	279, 297, 362, 455, 517, 544, 765, 820, 821
TspGWI	ACGGA	1 cut(s)	1145
TspRI	CASTG	1 cut(s)	1174
Tth111I	GACNNNGTC	1 cut(s)	958
Van91I	CCANNNNNTGG	1 cut(s)	735
XceI	RCATGY	1 cut(s)	1027
XmiI	GTMKAC	2 cut(s)	666, 1091
XspI	CTAG	3 cut(s)	623, 629, 945
ZrmI	AGTACT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.