Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018059.1

Orthogroup ID

OG0007534

Physical Location & Seq

Genomic Coordinates Reverse (-)

18914 .. 19263

Gene Structure 350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018059.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atgtttctatttgtggctcatccatatgatgttggtgactgcattgtttttgaaggcgttccgatgacagttgaagagataaacatctttactacagttttcttgagactcagtaataatgagaaggtctactatccgaattcagttttatccgcaacatcgatcagcaattactccagaagtccagatatgagagatgctgtagagttctcaattgctataacaccagtggagaagatagtcaagttgaaagagaaaataaaggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

89

Amino Acids

10.14

Weight (kDa)

5.09

Isoelectric Point (pI)

30.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007534)

Species	Orthologous Gene IDs
malus_domestica	MD02G1238000.v1.1 MD02G1238200.v1.1 MD07G1078300.v1.1 MD07G1078500.v1.1
prunus_persica	Prupe.2G100800_v2.0.a1
pyrus_communis	pycom02g20350 pycom07g06210 pycom07g06220
rosa_chinensis	RchiOBHm_Chr1g0337341
rosa_laevigata	RLG00000029284
rosa_multiflora	Rmu_sc0006656.1_g000011 Rmu_sc0006824.1_g000012 Rmu_sc0006824.1_g000017 Rmu_sc0018059.1_g000005
rosa_roxburghii	Rroxscaffold_4G00314500
rosa_rugosa	Rorug01G0134500.1
rosa_samantha	Rh1AG153500 Rh1BG122800 Rh1CG144500 Rh1DG161200 Rh6AG271300 Rh6BG515500 Rh6CG521300 Rh6DG507200
rosa_wichuraiana	Rw1G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	139
AgsI	TTSAA	3 cut(s)	53, 74, 250
Alw26I	GTCTC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	139
Asp700I	GAANNNNTTC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	100
BfmI	CTRYAG	2 cut(s)	93, 201
BmsI	GCATC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	160
BpuEI	CTTGAG	1 cut(s)	124
Bsa29I	ATCGAT	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	227
Bse8I	GATNNNNATC	1 cut(s)	83
BseCI	ATCGAT	1 cut(s)	161
BseGI	GGATG	1 cut(s)	19
BseJI	GATNNNNATC	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	227
BshVI	ATCGAT	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	162
BspACI	CCGC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	123
BspDI	ATCGAT	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	227
BssMI	GATC	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	70, 97
Bst6I	CTCTTC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	19
BstKTI	GATC	1 cut(s)	165
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	162
BstSFI	CTRYAG	2 cut(s)	93, 201
Bsu15I	ATCGAT	1 cut(s)	161
BsuTUI	ATCGAT	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	234
ClaI	ATCGAT	1 cut(s)	161
CviJI	RGCY	1 cut(s)	17
CviKI_1	RGCY	1 cut(s)	17
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EcoRI	GAATTC	1 cut(s)	139
FaiI	YATR	4 cut(s)	25, 27, 191, 221
FauNDI	CATATG	1 cut(s)	25
FblI	GTMKAC	1 cut(s)	129
FokI	GGATG	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	160
HinfI	GANTC	1 cut(s)	108
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	63, 138
Hpy188III	TCNNGA	3 cut(s)	103, 177, 185
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	47, 118
HpyCH4III	ACNGT	2 cut(s)	70, 97
HpyCH4V	TGCA	1 cut(s)	42
HpyF3I	CTNAG	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	162
LpnPI	CCDG	3 cut(s)	190, 198, 240
LweI	GCATC	1 cut(s)	187
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	2 cut(s)	86, 247
MfeI	CAATTG	1 cut(s)	213
MluCI	AATT	3 cut(s)	139, 169, 213
MlyI	GAGTC	1 cut(s)	102
MroXI	GAANNNNTTC	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	213
NdeI	CATATG	1 cut(s)	25
NdeII	GATC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	57
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
RseI	CAYNNNNRTG	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	162
SchI	GAGTC	1 cut(s)	102
SetI	ASST	1 cut(s)	129
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	2 cut(s)	93, 201
SgeI	CNNG	5 cut(s)	115, 189, 197, 239, 256
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	3 cut(s)	139, 169, 213
SsiI	CCGC	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	70, 97
TaqI	TCGA	1 cut(s)	161
TasI	AATT	3 cut(s)	139, 169, 213
TscAI	CASTG	1 cut(s)	234
TseFI	GTSAC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	35
TspRI	CASTG	1 cut(s)	234
XapI	RAATTY	1 cut(s)	139
XmiI	GTMKAC	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.