Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007534

Physical Location & Seq

Genomic Coordinates Reverse (-)

67681895 .. 67682447

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG521300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTTCTATTTGTGGCGCATCCATATATATGATGTTGGTGACTGCATTGTTTTTGAAGGCGTTCCGATGATAGTTGAAGAGATGAACACCTTTACTACGGTTTTCTTGAAACTCAGTAACAACGAGAAGGTGTACTATCCGAATTCAGTTTTATCTGCAACATCGATCAGCAATTACTCCAGAAGTCCAGATATGAGAGATGCTGTAGAGTTCTCAATTGCTTTAACACCAGTGGAGAAGATAGTCAAGTTGAAAGAAAAAATAAAGGAATACATCGAGGGGAAGCCTCAATATTGGCATCGAAAACACAATGTGGTGGTGATTAACATCGAAGATGTTGTTAAGTTAGTGGAAACTTTTGATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

122

Amino Acids

14.3

Weight (kDa)

5.59

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MS_channel_2nd	PF00924	10 - 61	2.2e-07	Mechanosensitive ion channel, beta-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007534)

Species	Orthologous Gene IDs
malus_domestica	MD02G1238000.v1.1 MD02G1238200.v1.1 MD07G1078300.v1.1 MD07G1078500.v1.1
prunus_persica	Prupe.2G100800_v2.0.a1
pyrus_communis	pycom02g20350 pycom07g06210 pycom07g06220
rosa_chinensis	RchiOBHm_Chr1g0337341
rosa_laevigata	RLG00000029284
rosa_multiflora	Rmu_sc0006656.1_g000011 Rmu_sc0006824.1_g000012 Rmu_sc0006824.1_g000017 Rmu_sc0018059.1_g000005
rosa_roxburghii	Rroxscaffold_4G00314500
rosa_rugosa	Rorug01G0134500.1
rosa_samantha	Rh1AG153500 Rh1BG122800 Rh1CG144500 Rh1DG161200 Rh6AG271300 Rh6BG515500 Rh6CG521300 Rh6DG507200
rosa_wichuraiana	Rw1G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	142
AdeI	CACNNNGTG	1 cut(s)	313
AfaI	GTAC	1 cut(s)	134
AgsI	TTSAA	4 cut(s)	56, 77, 109, 253
ApoI	RAATTY	1 cut(s)	142
Asp700I	GAANNNNTTC	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	18
AsuHPI	GGTGA	2 cut(s)	50, 331
BfmI	CTRYAG	1 cut(s)	204
BmsI	GCATC	3 cut(s)	27, 190, 307
BpmI	CTGGAG	1 cut(s)	163
Bsa29I	ATCGAT	1 cut(s)	164
BsaBI	GATNNNNATC	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	230
Bse8I	GATNNNNATC	1 cut(s)	326
BseCI	ATCGAT	1 cut(s)	164
BseGI	GGATG	1 cut(s)	18
BseJI	GATNNNNATC	1 cut(s)	326
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	230
BshVI	ATCGAT	1 cut(s)	164
Bsp143I	GATC	1 cut(s)	165
BspCNI	CTCAG	1 cut(s)	126
BspDI	ATCGAT	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	230
BssMI	GATC	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	1 cut(s)	168
BstMBI	GATC	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	204
Bsu15I	ATCGAT	1 cut(s)	164
BsuTUI	ATCGAT	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	237
CfoI	GCGC	1 cut(s)	18
ClaI	ATCGAT	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	133
CviJI	RGCY	1 cut(s)	286
CviKI_1	RGCY	1 cut(s)	286
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
DraIII	CACNNNGTG	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
EcoRI	GAATTC	1 cut(s)	142
FaiI	YATR	5 cut(s)	24, 26, 28, 30, 194
FokI	GGATG	1 cut(s)	5
GlaI	GCGC	1 cut(s)	17
GsuI	CTGGAG	1 cut(s)	163
HhaI	GCGC	1 cut(s)	18
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HphI	GGTGA	2 cut(s)	50, 331
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	66, 141
Hpy188III	TCNNGA	3 cut(s)	106, 180, 188
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	50, 121
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	45, 158
HpyF3I	CTNAG	1 cut(s)	113
HspAI	GCGC	1 cut(s)	16
Kzo9I	GATC	1 cut(s)	165
LpnPI	CCDG	3 cut(s)	193, 201, 243
LweI	GCATC	3 cut(s)	27, 190, 307
MaeIII	GTNAC	2 cut(s)	38, 116
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	3 cut(s)	89, 250, 344
MfeI	CAATTG	1 cut(s)	216
MluCI	AATT	3 cut(s)	142, 172, 216
MnlI	CCTC	2 cut(s)	271, 297
MroXI	GAANNNNTTC	1 cut(s)	60
MseI	TTAA	3 cut(s)	224, 324, 342
MslI	CAYNNNNRTG	1 cut(s)	27
MunI	CAATTG	1 cut(s)	216
NdeII	GATC	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	60
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	224, 324, 342
Sau3AI	GATC	1 cut(s)	165
SetI	ASST	2 cut(s)	92, 132
SfaNI	GCATC	3 cut(s)	27, 190, 307
SfcI	CTRYAG	1 cut(s)	204
SgeI	CNNG	7 cut(s)	118, 136, 192, 200, 242, 259, 289
SmiMI	CAYNNNNRTG	1 cut(s)	27
Sse9I	AATT	3 cut(s)	142, 172, 216
SspI	AATATT	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	4 cut(s)	164, 276, 301, 330
TasI	AATT	3 cut(s)	142, 172, 216
TatI	WGTACW	1 cut(s)	132
Tru1I	TTAA	3 cut(s)	224, 324, 342
Tru9I	TTAA	3 cut(s)	224, 324, 342
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	237
XapI	RAATTY	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.