Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006824.1

Orthogroup ID

OG0007534

Physical Location & Seq

Genomic Coordinates Reverse (-)

75172 .. 78408

Gene Structure 3237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006824.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

atgctgacgtgtctgtgggtcccagatgctgacgtgtcggatgactgttctgctgatgtggctgtgggcttgagaggtatctggggacaaagtttggttgaaattggatccccggaagatggtgaaccggtggaatatttgctgcgggttgtatggagcttccgatggccggttcgatacatagaagaggaagatttactacggttcttgaagaatgatgaaattcacaccatattccctctctttgaaggagcaactgaaactggtagaataacaaagtcttccttcagaaattgggtggtacatgcctacattgagcgcagagcattggctcattctttgaatgataccaagaccgctgtccaacaacttcacaagctggcgagtgcagttgtgattgtgattataactgtggtgagccttttggtcatgggtttggccacaactaaggttatctttgtggtcacttctcagttgctgctcgtaggcttcatgtttcaaaacatgtgcaaaactatgtttgagtccatcatttttgtatttgtgatgcacccgttcgatgtcggtgatcgttgcgtcgtcgatggcgtacagatgattgtggaagagatgaacatattgacaacagttttcttaaggtatgataatgagaaaatatattacccgaattctgtgcttcttacaaagcctattagcaatttcagaagaagtccagacatgggtgacagtgttgatttcaccattgatgtctctacttcagttgacgatgttactgcactcaagaaggctatacaatcatatattgagagcaaaccaaagcattggaaccctaaacactcggtgatagtgaaggacattgtgaatgtggataagatgaaaatgttgctatgtgttcaacatacgatgaaccatcaaaactatggggaaaagagtgttcgaagatcagagctggtgtttgaattgaagaggatattccaaaaccttggcattaagtaccatcttcttcctcaagaagtaaatattccacaattcaacaaaagcaccgggcctaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

351

Amino Acids

40.1

Weight (kDa)

6.08

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007534)

Species	Orthologous Gene IDs
malus_domestica	MD02G1238000.v1.1 MD02G1238200.v1.1 MD07G1078300.v1.1 MD07G1078500.v1.1
prunus_persica	Prupe.2G100800_v2.0.a1
pyrus_communis	pycom02g20350 pycom07g06210 pycom07g06220
rosa_chinensis	RchiOBHm_Chr1g0337341
rosa_laevigata	RLG00000029284
rosa_multiflora	Rmu_sc0006656.1_g000011 Rmu_sc0006824.1_g000012 Rmu_sc0006824.1_g000017 Rmu_sc0018059.1_g000005
rosa_roxburghii	Rroxscaffold_4G00314500
rosa_rugosa	Rorug01G0134500.1
rosa_samantha	Rh1AG153500 Rh1BG122800 Rh1CG144500 Rh1DG161200 Rh6AG271300 Rh6BG515500 Rh6CG521300 Rh6DG507200
rosa_wichuraiana	Rw1G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
AciI	CCGC	2 cut(s)	145, 357
AclWI	GGATC	2 cut(s)	102, 115
AcoI	YGGCCR	2 cut(s)	167, 438
AcsI	RAATTY	2 cut(s)	222, 667
AcuI	CTGAAG	2 cut(s)	271, 741
AdeI	CACNNNGTG	1 cut(s)	841
AfaI	GTAC	3 cut(s)	303, 591, 995
AfiI	CCNNNNNNNGG	3 cut(s)	119, 169, 719
AflII	CTTAAG	1 cut(s)	634
AflIII	ACRYGT	3 cut(s)	8, 33, 504
AgeI	ACCGGT	1 cut(s)	127
AgsI	TTSAA	9 cut(s)	101, 211, 248, 343, 500, 896, 959, 964, 1033
AjiI	CACGTC	2 cut(s)	9, 34
AluBI	AGCT	3 cut(s)	159, 379, 949
AluI	AGCT	3 cut(s)	159, 379, 949
Alw26I	GTCTC	1 cut(s)	754
AlwI	GGATC	2 cut(s)	102, 115
AlwNI	CAGNNNCTG	2 cut(s)	29, 478
AoxI	GGCC	3 cut(s)	167, 438, 1046
ApeKI	GCWGC	2 cut(s)	142, 478
ApoI	RAATTY	2 cut(s)	222, 667
AsiGI	ACCGGT	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	2 cut(s)	19, 1046
AsuC2I	CCSGG	2 cut(s)	113, 1045
AsuHPI	GGTGA	6 cut(s)	134, 427, 578, 730, 734, 853
AsuII	TTCGAA	1 cut(s)	937
AvaII	GGWCC	1 cut(s)	19
BalI	TGGCCA	1 cut(s)	440
BamHI	GGATCC	1 cut(s)	107
BarI	GAAGNNNNNNTAC	2 cut(s)	183, 215
BbsI	GAAGAC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	129, 465
BccI	CCATC	6 cut(s)	113, 159, 536, 578, 918, 1005
BcgI	CGANNNNNNTGC	4 cut(s)	655, 689, 755, 789
BcnI	CCSGG	2 cut(s)	113, 1045
BcoDI	GTCTC	1 cut(s)	754
BfrI	CTTAAG	1 cut(s)	634
BisI	GCNGC	2 cut(s)	143, 479
BlsI	GCNGC	2 cut(s)	144, 480
Bme1390I	CCNGG	2 cut(s)	113, 1045
Bme18I	GGWCC	1 cut(s)	19
BmgBI	CACGTC	2 cut(s)	9, 34
BmgT120I	GGNCC	2 cut(s)	19, 1046
BmiI	GGNNCC	4 cut(s)	20, 21, 109, 827
BmrFI	CCNGG	2 cut(s)	113, 1045
BmsI	GCATC	2 cut(s)	16, 537
BoxI	GACNNNNGTC	1 cut(s)	359
BpiI	GAAGAC	1 cut(s)	273
Bpu14I	TTCGAA	1 cut(s)	937
BpuEI	CTTGAG	3 cut(s)	91, 764, 993
BpuMI	CCSGG	2 cut(s)	113, 1045
BsaJI	CCNNGG	2 cut(s)	111, 982
BsaWI	WCCGGW	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 169, 719
Bse118I	RCCGGY	2 cut(s)	127, 169
Bse1I	ACTGG	1 cut(s)	268
BseDI	CCNNGG	2 cut(s)	111, 982
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	3 cut(s)	119, 169, 719
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	1 cut(s)	268
BseXI	GCAGC	2 cut(s)	129, 465
BsgI	GTGCAG	2 cut(s)	408, 759
BshFI	GGCC	3 cut(s)	169, 440, 1048
BshTI	ACCGGT	1 cut(s)	127
BsiSI	CCGG	4 cut(s)	113, 128, 170, 1044
BslFI	GGGAC	2 cut(s)	5, 99
BslI	CCNNNNNNNGG	3 cut(s)	119, 169, 719
BsmAI	GTCTC	1 cut(s)	754
BsmFI	GGGAC	2 cut(s)	5, 99
BsnI	GGCC	3 cut(s)	169, 440, 1048
Bsp119I	TTCGAA	1 cut(s)	937
Bsp143I	GATC	3 cut(s)	107, 568, 941
BspACI	CCGC	2 cut(s)	145, 357
BspANI	GGCC	3 cut(s)	169, 440, 1048
BspCNI	CTCAG	1 cut(s)	484
BspLI	GGNNCC	4 cut(s)	20, 21, 109, 827
BspPI	GGATC	2 cut(s)	102, 115
BspT104I	TTCGAA	1 cut(s)	937
BspTI	CTTAAG	1 cut(s)	634
BsrFI	RCCGGY	2 cut(s)	127, 169
BsrI	ACTGG	1 cut(s)	268
BssAI	RCCGGY	2 cut(s)	127, 169
BssECI	CCNNGG	2 cut(s)	111, 982
BssMI	GATC	3 cut(s)	107, 568, 941
BssT1I	CCWWGG	1 cut(s)	982
Bst4CI	ACNGT	5 cut(s)	47, 204, 412, 628, 728
Bst6I	CTCTTC	3 cut(s)	180, 600, 959
BstAFI	CTTAAG	1 cut(s)	634
BstBI	TTCGAA	1 cut(s)	937
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	2 cut(s)	447, 471
BstF5I	GGATG	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	3 cut(s)	110, 571, 944
BstMAI	GTCTC	1 cut(s)	754
BstMBI	GATC	3 cut(s)	107, 568, 941
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNSI	RCATGY	2 cut(s)	308, 508
BstPAI	GACNNNNGTC	1 cut(s)	359
BstSCI	CCNGG	2 cut(s)	111, 1043
BstV1I	GCAGC	2 cut(s)	129, 465
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	107
BstXI	CCANNNNNNTGG	2 cut(s)	822, 983
BstYI	RGATCY	1 cut(s)	107
BsuRI	GGCC	3 cut(s)	169, 440, 1048
BtrI	CACGTC	2 cut(s)	9, 34
BtsCI	GGATG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	733
Cac8I	GCNNGC	1 cut(s)	381
CaiI	CAGNNNCTG	2 cut(s)	29, 478
CfoI	GCGC	1 cut(s)	321
Cfr10I	RCCGGY	2 cut(s)	127, 169
Cfr13I	GGNCC	2 cut(s)	19, 1046
CseI	GACGC	1 cut(s)	565
Csp6I	GTAC	3 cut(s)	302, 590, 994
CspAI	ACCGGT	1 cut(s)	127
CviAII	CATG	5 cut(s)	305, 430, 493, 505, 718
CviQI	GTAC	3 cut(s)	302, 590, 994
DdeI	CTNAG	2 cut(s)	447, 471
DpnI	GATC	3 cut(s)	109, 570, 943
DpnII	GATC	3 cut(s)	107, 568, 941
DraIII	CACNNNGTG	1 cut(s)	841
EaeI	YGGCCR	2 cut(s)	167, 438
Eam1104I	CTCTTC	3 cut(s)	180, 600, 959
EarI	CTCTTC	3 cut(s)	180, 600, 959
Eco130I	CCWWGG	1 cut(s)	982
Eco47I	GGWCC	1 cut(s)	19
Eco57I	CTGAAG	2 cut(s)	271, 741
EcoO109I	RGGNCCY	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	667
EcoT14I	CCWWGG	1 cut(s)	982
ErhI	CCWWGG	1 cut(s)	982
FaeI	CATG	5 cut(s)	308, 433, 496, 508, 721
FalI	AAGNNNNNCTT	4 cut(s)	269, 301, 440, 472
FaqI	GGGAC	2 cut(s)	5, 99
FatI	CATG	5 cut(s)	304, 429, 492, 504, 717
FauI	CCCGC	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	143, 479
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	2 cut(s)	143, 479
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	2 cut(s)	143, 479
HaeIII	GGCC	3 cut(s)	169, 440, 1048
HapII	CCGG	4 cut(s)	113, 128, 170, 1044
HgaI	GACGC	1 cut(s)	565
HhaI	GCGC	1 cut(s)	321
Hin1II	CATG	5 cut(s)	308, 433, 496, 508, 721
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HinfI	GANTC	1 cut(s)	524
HpaII	CCGG	4 cut(s)	113, 128, 170, 1044
HphI	GGTGA	6 cut(s)	134, 427, 578, 730, 734, 853
Hpy166II	GTNNAC	2 cut(s)	125, 763
Hpy188I	TCNGA	5 cut(s)	40, 164, 290, 704, 946
Hpy188III	TCNNGA	4 cut(s)	208, 713, 781, 1010
Hpy8I	GTNNAC	2 cut(s)	125, 763
Hpy99I	CGWCG	2 cut(s)	581, 584
HpyAV	CCTTC	4 cut(s)	242, 295, 778, 844
HpyCH4III	ACNGT	5 cut(s)	47, 204, 412, 628, 728
HpyCH4IV	ACGT	2 cut(s)	8, 33
HpyCH4V	TGCA	4 cut(s)	389, 510, 550, 776
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	2 cut(s)	447, 471
HpySE526I	ACGT	2 cut(s)	8, 33
Hsp92II	CATG	5 cut(s)	308, 433, 496, 508, 721
HspAI	GCGC	1 cut(s)	319
KflI	GGGWCCC	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	107, 568, 941
LmnI	GCTCC	2 cut(s)	156, 251
LpnPI	CCDG	9 cut(s)	36, 67, 126, 141, 183, 249, 365, 726, 935
Lsp1109I	GCAGC	2 cut(s)	129, 465
LweI	GCATC	2 cut(s)	16, 537
MaeII	ACGT	2 cut(s)	8, 33
MaeIII	GTNAC	3 cut(s)	463, 722, 769
MalI	GATC	3 cut(s)	109, 570, 943
MboI	GATC	3 cut(s)	107, 568, 941
MflI	RGATCY	1 cut(s)	107
MlsI	TGGCCA	1 cut(s)	440
MluCI	AATT	8 cut(s)	102, 222, 292, 667, 697, 959, 1028, 1051
MluNI	TGGCCA	1 cut(s)	440
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	2 cut(s)	18, 388
MnlI	CCTC	5 cut(s)	68, 181, 249, 960, 1017
Mox20I	TGGCCA	1 cut(s)	440
MscI	TGGCCA	1 cut(s)	440
MseI	TTAA	3 cut(s)	635, 990, 1054
Msp20I	TGGCCA	1 cut(s)	440
MspA1I	CMGCKG	1 cut(s)	359
MspCI	CTTAAG	1 cut(s)	634
MspI	CCGG	4 cut(s)	113, 128, 170, 1044
MspR9I	CCNGG	2 cut(s)	113, 1045
MwoI	GCNNNNNNNGC	1 cut(s)	59
NciI	CCSGG	2 cut(s)	113, 1045
NdeII	GATC	3 cut(s)	107, 568, 941
NlaIII	CATG	5 cut(s)	308, 433, 496, 508, 721
NlaIV	GGNNCC	4 cut(s)	20, 21, 109, 827
NmuCI	GTSAC	2 cut(s)	463, 722
NspI	RCATGY	2 cut(s)	308, 508
NspV	TTCGAA	1 cut(s)	937
PciI	ACATGT	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	1 cut(s)	585
PinAI	ACCGGT	1 cut(s)	127
PkrI	GCNGC	2 cut(s)	144, 480
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
PpuMI	RGGWCCY	1 cut(s)	19
PscI	ACATGT	1 cut(s)	504
PshAI	GACNNNNGTC	1 cut(s)	359
PsiI	TTATAA	1 cut(s)	407
Psp5II	RGGWCCY	1 cut(s)	19
PspN4I	GGNNCC	4 cut(s)	20, 21, 109, 827
PspPI	GGNCC	2 cut(s)	19, 1046
PspPPI	RGGWCCY	1 cut(s)	19
PstNI	CAGNNNCTG	2 cut(s)	29, 478
PsuI	RGATCY	1 cut(s)	107
RsaI	GTAC	3 cut(s)	303, 591, 995
RsaNI	GTAC	3 cut(s)	302, 590, 994
SaqAI	TTAA	3 cut(s)	635, 990, 1054
SatI	GCNGC	2 cut(s)	143, 479
Sau3AI	GATC	3 cut(s)	107, 568, 941
Sau96I	GGNCC	2 cut(s)	19, 1046
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	2 cut(s)	113, 1045
SetI	ASST	9 cut(s)	11, 36, 79, 161, 381, 453, 641, 951, 984
SfaNI	GCATC	2 cut(s)	16, 537
SfuI	TTCGAA	1 cut(s)	937
SinI	GGWCC	1 cut(s)	19
SmlI	CTYRAG	4 cut(s)	70, 634, 779, 1008
SmoI	CTYRAG	4 cut(s)	70, 634, 779, 1008
Sse9I	AATT	8 cut(s)	102, 222, 292, 667, 697, 959, 1028, 1051
SsiI	CCGC	2 cut(s)	145, 357
SspI	AATATT	2 cut(s)	137, 1021
StyD4I	CCNGG	2 cut(s)	111, 1043
StyI	CCWWGG	1 cut(s)	982
TaaI	ACNGT	5 cut(s)	47, 204, 412, 628, 728
TaiI	ACGT	2 cut(s)	11, 36
TaqI	TCGA	4 cut(s)	175, 558, 582, 937
TasI	AATT	8 cut(s)	102, 222, 292, 667, 697, 959, 1028, 1051
Tru1I	TTAA	3 cut(s)	635, 990, 1054
Tru9I	TTAA	3 cut(s)	635, 990, 1054
TscAI	CASTG	1 cut(s)	733
TseFI	GTSAC	2 cut(s)	463, 722
TseI	GCWGC	2 cut(s)	142, 478
Tsp45I	GTSAC	2 cut(s)	463, 722
TspDTI	ATGAA	5 cut(s)	234, 481, 626, 890, 920
TspRI	CASTG	1 cut(s)	733
Vha464I	CTTAAG	1 cut(s)	634
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	2 cut(s)	222, 667
XceI	RCATGY	2 cut(s)	308, 508
XcmI	CCANNNNNNNNNTGG	1 cut(s)	917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.