Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003477

Physical Location & Seq

Genomic Coordinates Forward (+)

31965117 .. 31966769

Gene Structure 1653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1265400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCCCCCTCGTTGTGGCCTTGGCAAGAACCATATCGCTTTAATCTTAATGATGGAGGACTTCCTGTTGCTGATTTGAATCAGCCCAGCATGACTCCCATCTCCATTCACCCTGATGGTGGTAATCCTGATAGCACGGTGGTTGTTACTTGTTTCAACTCCATGACATGGGTCATAGAAAATAAGAATTCAACATCAGCTGGGAAAGTGGCTGTTATCAACTTGAATCTACAAGATTATGGGAAGAATCCTGCAGGGGAGAAAGAGGTACAATTTAGGCTAACAAGGGTTACACTAGAGCCTATGTTAAGATCGATGGCCTATATCAGTCAGCAGCTCTCTGCACCAGCCAACAGAGTTGCTGTCATCAATTTTGAAGGAGGCGACAACAGTCATCAGGGATTTGATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COMM_domain FAR1 MULE SWIM

Protein Analysis

138

Amino Acids

14.99

Weight (kDa)

4.97

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003477)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04941 FvH4_7g04941 FvH4_7g04941
malus_domestica	MD02G1265400.v1.1 MD07G1054000.v1.1
prunus_persica	Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1
pyrus_communis	pycom07g04180
rosa_chinensis	RchiOBHm_Chr1g0331031 RchiOBHm_Chr1g0338891
rosa_multiflora	Rmu_co8407023.1_g000001 Rmu_sc0002515.1_g000008
rosa_roxburghii	Rroxscaffold_1G00031570 Rroxscaffold_4G00313750 Rroxscaffold_4G00319540
rosa_rugosa	Rorug01G0091800
rosa_samantha	Rh1AG113400 Rh1BG087300 Rh1CG110300 Rh1DG119100
rosa_wichuraiana	Rw1G009250 Rw3G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	187
AfaI	GTAC	1 cut(s)	270
AfiI	CCNNNNNNNGG	3 cut(s)	15, 119, 168
AgsI	TTSAA	5 cut(s)	79, 157, 192, 226, 377
AluBI	AGCT	2 cut(s)	200, 337
AluI	AGCT	2 cut(s)	200, 337
AoxI	GGCC	3 cut(s)	3, 17, 318
ApeKI	GCWGC	1 cut(s)	334
ApoI	RAATTY	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	5 cut(s)	47, 107, 110, 310, 401
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	252
BisI	GCNGC	1 cut(s)	335
BlsI	GCNGC	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	6
BoxI	GACNNNNGTC	2 cut(s)	170, 390
Bsa29I	ATCGAT	1 cut(s)	314
BsaBI	GATNNNNATC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 119, 168
Bse8I	GATNNNNATC	1 cut(s)	78
BseCI	ATCGAT	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	20
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	3 cut(s)	15, 119, 168
BseXI	GCAGC	1 cut(s)	346
BseYI	CCCAGC	2 cut(s)	86, 200
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	3 cut(s)	5, 19, 320
BshVI	ATCGAT	1 cut(s)	314
BslI	CCNNNNNNNGG	3 cut(s)	15, 119, 168
BsnI	GGCC	3 cut(s)	5, 19, 320
Bsp143I	GATC	1 cut(s)	311
BspANI	GGCC	3 cut(s)	5, 19, 320
BspDI	ATCGAT	1 cut(s)	314
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	1 cut(s)	311
BssT1I	CCWWGG	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	139, 392
BstKTI	GATC	1 cut(s)	314
BstMBI	GATC	1 cut(s)	311
BstPAI	GACNNNNGTC	2 cut(s)	170, 390
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	346
Bsu15I	ATCGAT	1 cut(s)	314
BsuRI	GGCC	3 cut(s)	5, 19, 320
BsuTUI	ATCGAT	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	3 cut(s)	91, 163, 168
CviQI	GTAC	1 cut(s)	269
DpnI	GATC	1 cut(s)	313
DpnII	GATC	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	3 cut(s)	94, 166, 171
FaiI	YATR	8 cut(s)	34, 92, 164, 169, 176, 240, 305, 324
FatI	CATG	3 cut(s)	90, 162, 167
Fnu4HI	GCNGC	1 cut(s)	335
Fsp4HI	GCNGC	1 cut(s)	335
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	1 cut(s)	335
GsaI	CCCAGC	2 cut(s)	90, 204
HaeIII	GGCC	3 cut(s)	5, 19, 320
Hin1II	CATG	3 cut(s)	94, 166, 171
HinfI	GANTC	4 cut(s)	79, 94, 226, 247
HphI	GGTGA	1 cut(s)	101
Hpy188III	TCNNGA	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	2 cut(s)	139, 392
HpyCH4V	TGCA	2 cut(s)	254, 344
Hsp92II	CATG	3 cut(s)	94, 166, 171
Kzo9I	GATC	1 cut(s)	311
LpnPI	CCDG	9 cut(s)	78, 100, 126, 141, 186, 240, 264, 360, 383
Lsp1109I	GCAGC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	296
MaeIII	GTNAC	2 cut(s)	145, 289
MalI	GATC	1 cut(s)	313
MboI	GATC	1 cut(s)	311
MboII	GAAGA	1 cut(s)	256
MluCI	AATT	3 cut(s)	187, 272, 370
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	4 cut(s)	19, 50, 259, 374
MseI	TTAA	3 cut(s)	42, 48, 308
MslI	CAYNNNNRTG	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	200
NdeII	GATC	1 cut(s)	311
NlaIII	CATG	3 cut(s)	94, 166, 171
NlaIV	GGNNCC	1 cut(s)	6
PfeI	GAWTC	3 cut(s)	79, 226, 247
PflMI	CCANNNNNTGG	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	336
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PshAI	GACNNNNGTC	2 cut(s)	170, 390
PspFI	CCCAGC	2 cut(s)	86, 200
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	114
SaqAI	TTAA	3 cut(s)	42, 48, 308
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	1 cut(s)	311
Sau96I	GGNCC	1 cut(s)	4
SbfI	CCTGCAGG	1 cut(s)	256
SchI	GAGTC	1 cut(s)	88
SdaI	CCTGCAGG	1 cut(s)	256
SetI	ASST	3 cut(s)	202, 270, 339
SfcI	CTRYAG	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse8387I	CCTGCAGG	1 cut(s)	256
Sse9I	AATT	3 cut(s)	187, 272, 370
SspMI	CTAG	1 cut(s)	296
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	2 cut(s)	139, 392
TaqI	TCGA	1 cut(s)	314
TasI	AATT	3 cut(s)	187, 272, 370
TfiI	GAWTC	3 cut(s)	79, 226, 247
Tru1I	TTAA	3 cut(s)	42, 48, 308
Tru9I	TTAA	3 cut(s)	42, 48, 308
TseI	GCWGC	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	168
XapI	RAATTY	1 cut(s)	187
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.