Rmu_co8407023.1_g000001

COMM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8407023.1
OG0003477
Physical Location & Seq
Reverse (-)
1 .. 1171
1171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8407023.1_g000001.1.cds

Sequence Viewer

Length: 174 bp
atggagaactgtaactccggatcagctaacaaagtggccgtcattaatctcaagctgcaagattataccaaatctagtgtagatgaaatcgaggtgaagttccaactgactagggacactcttgaagcaatgttgaggtcattgacctacatcagagaacaactctcaagcgtg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMM_domain

Protein Analysis

58

Amino Acids

6.58

Weight (kDa)

5.18

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 17
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 1 cut(s) 36
AgsI TTSAA 1 cut(s) 125
AloI GAACNNNNNNTCC 1 cut(s) 31
AluBI AGCT 2 cut(s) 26, 55
AluI AGCT 2 cut(s) 26, 55
AlwI GGATC 1 cut(s) 28
Aor13HI TCCGGA 1 cut(s) 17
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 55
ArsI GACNNNNNNTTYG 2 cut(s) 24, 56
AseI ATTAAT 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 106
BbvI GCAGC 1 cut(s) 42
BceAI ACGGC 1 cut(s) 23
BfaI CTAG 2 cut(s) 75, 111
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
BplI GAGNNNNNCTC 1 cut(s) 147
BpuEI CTTGAG 2 cut(s) 35, 151
BsaWI WCCGGW 1 cut(s) 17
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bse3DI GCAATG 1 cut(s) 135
BseAI TCCGGA 1 cut(s) 17
BseMI GCAATG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 42
BshFI GGCC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 1 cut(s) 38
Bsp13I TCCGGA 1 cut(s) 17
Bsp143I GATC 1 cut(s) 20
BspANI GGCC 1 cut(s) 38
BspEI TCCGGA 1 cut(s) 17
BspPI GGATC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 135
BssMI GATC 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 11
BstKTI GATC 1 cut(s) 23
BstMBI GATC 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 42
BsuRI GGCC 1 cut(s) 38
CviJI RGCY 3 cut(s) 26, 38, 55
CviKI_1 RGCY 3 cut(s) 26, 38, 55
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
EaeI YGGCCR 1 cut(s) 36
FaiI YATR 1 cut(s) 66
FaqI GGGAC 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 2 cut(s) 75, 111
GluI GCNGC 1 cut(s) 56
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 18
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 2 cut(s) 18, 122
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4V TGCA 1 cut(s) 58
Kpn2I TCCGGA 1 cut(s) 17
Kzo9I GATC 1 cut(s) 20
LpnPI CCDG 1 cut(s) 31
Lsp1109I GCAGC 1 cut(s) 42
MaeI CTAG 2 cut(s) 75, 111
MaeIII GTNAC 1 cut(s) 11
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 2 cut(s) 85, 129
MroI TCCGGA 1 cut(s) 17
MseI TTAA 1 cut(s) 45
MspI CCGG 1 cut(s) 18
NdeII GATC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 57
PshBI ATTAAT 1 cut(s) 45
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 1 cut(s) 20
SetI ASST 5 cut(s) 28, 57, 96, 140, 149
SgeI CNNG 7 cut(s) 30, 64, 71, 87, 103, 123, 134
SmlI CTYRAG 2 cut(s) 50, 166
SmoI CTYRAG 2 cut(s) 50, 166
SspMI CTAG 2 cut(s) 75, 111
TaaI ACNGT 1 cut(s) 11
TaqI TCGA 1 cut(s) 90
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseI GCWGC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 99
VspI ATTAAT 1 cut(s) 45
XspI CTAG 2 cut(s) 75, 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.