Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003477

Physical Location & Seq

Genomic Coordinates Reverse (-)

30049309 .. 30053255

Gene Structure 3947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56590

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGACCCCTTTGTTGTGGCCACGCCAGGATGAAGTTATGAGGCGATTTAATCTTAATGATGCTGGGGCACCAGCTCAAACTGTTTCTGATTTGAATTTGCCACGAATGGCCCCGTTTCCCTTCTACGGGATGATGGTACTCCTGAGAATATGTCATGCACCAGGAAATAGAGTAGCTGTCATTAACCTCAAGTTGCAAGATTATAGCAGGACTCCGTCAGCAGAATCAGAGGTTAAGTTTCAGCTCTCAAGGGTTTCATTGGAGCCAATGTTGAGGTCTATGGCCTACATTAGTGATCAGCTCTCAACACCAGCTAATAAGGTCGCTGTTATAAATTTAAAGCTTCAAGACACAGAGACAACTACAGGGGAGTCAGAGGTTAAGTTTCAAGTGTCTAGGGATACATTAGGTGCCATGCTACGATCAATGGCCTATATCCGCGAGCAGCTTTCAACCGCTGGCGAGGTCCATTCAGATTCCCAACCTAAAAAGCAGCGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COMM_domain FAR1 MULE SWIM

Protein Analysis

167

Amino Acids

18.81

Weight (kDa)

9.37

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003477)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04941 FvH4_7g04941 FvH4_7g04941
malus_domestica	MD02G1265400.v1.1 MD07G1054000.v1.1
prunus_persica	Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1 Prupe.2G058900_v2.0.a1
pyrus_communis	pycom07g04180
rosa_chinensis	RchiOBHm_Chr1g0331031 RchiOBHm_Chr1g0338891
rosa_multiflora	Rmu_co8407023.1_g000001 Rmu_sc0002515.1_g000008
rosa_roxburghii	Rroxscaffold_1G00031570 Rroxscaffold_4G00313750 Rroxscaffold_4G00319540
rosa_rugosa	Rorug01G0091800
rosa_samantha	Rh1AG113400 Rh1BG087300 Rh1CG110300 Rh1DG119100
rosa_wichuraiana	Rw1G009250 Rw3G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	332
AccB1I	GGYRCC	2 cut(s)	67, 410
AccII	CGCG	1 cut(s)	441
AciI	CCGC	3 cut(s)	439, 456, 496
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	2 cut(s)	94, 334
AfaI	GTAC	1 cut(s)	138
AfiI	CCNNNNNNNGG	2 cut(s)	125, 126
AgsI	TTSAA	4 cut(s)	94, 347, 389, 453
AjnI	CCWGG	2 cut(s)	24, 160
AluBI	AGCT	7 cut(s)	74, 176, 244, 301, 314, 343, 448
AluI	AGCT	7 cut(s)	74, 176, 244, 301, 314, 343, 448
Alw26I	GTCTC	1 cut(s)	350
AoxI	GGCC	4 cut(s)	17, 108, 282, 429
ApeKI	GCWGC	2 cut(s)	445, 493
ApoI	RAATTY	2 cut(s)	94, 334
AspS9I	GGNCC	2 cut(s)	109, 466
AvaII	GGWCC	1 cut(s)	466
BaeGI	GKGCMC	1 cut(s)	70
BalI	TGGCCA	1 cut(s)	19
BanI	GGYRCC	2 cut(s)	67, 410
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	1 cut(s)	127
BciT130I	CCWGG	2 cut(s)	26, 162
BciVI	GTATCC	1 cut(s)	394
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	363
BfuI	GTATCC	1 cut(s)	394
BisI	GCNGC	2 cut(s)	446, 494
BlsI	GCNGC	2 cut(s)	447, 495
Bme1390I	CCNGG	2 cut(s)	26, 162
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	2 cut(s)	109, 466
BmiI	GGNNCC	4 cut(s)	69, 111, 264, 412
BmrFI	CCNGG	2 cut(s)	26, 162
BmsI	GCATC	1 cut(s)	49
BpuEI	CTTGAG	2 cut(s)	173, 232
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 126
BseBI	CCWGG	2 cut(s)	26, 162
BseGI	GGATG	2 cut(s)	34, 135
BseLI	CCNNNNNNNGG	2 cut(s)	125, 126
BseMII	CTCAG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	457
BseYI	CCCAGC	1 cut(s)	62
Bsh1236I	CGCG	1 cut(s)	441
BshFI	GGCC	4 cut(s)	19, 110, 284, 431
BshNI	GGYRCC	2 cut(s)	67, 410
BslI	CCNNNNNNNGG	2 cut(s)	125, 126
BsmAI	GTCTC	1 cut(s)	350
BsnI	GGCC	4 cut(s)	19, 110, 284, 431
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	295, 422
BspACI	CCGC	3 cut(s)	439, 456, 496
BspANI	GGCC	4 cut(s)	19, 110, 284, 431
BspCNI	CTCAG	1 cut(s)	135
BspFNI	CGCG	1 cut(s)	441
BspLI	GGNNCC	4 cut(s)	69, 111, 264, 412
BspT107I	GGYRCC	2 cut(s)	67, 410
BssMI	GATC	2 cut(s)	295, 422
Bst2UI	CCWGG	2 cut(s)	26, 162
Bst4CI	ACNGT	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	443, 460
BstDEI	CTNAG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	34, 135
BstFNI	CGCG	1 cut(s)	441
BstKTI	GATC	2 cut(s)	298, 425
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	2 cut(s)	295, 422
BstNI	CCWGG	2 cut(s)	26, 162
BstSCI	CCNGG	2 cut(s)	24, 160
BstSFI	CTRYAG	1 cut(s)	363
BstSLI	GKGCMC	1 cut(s)	70
BstUI	CGCG	1 cut(s)	441
BstV1I	GCAGC	1 cut(s)	457
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	4 cut(s)	19, 110, 284, 431
BtsCI	GGATG	2 cut(s)	34, 135
Cac8I	GCNNGC	2 cut(s)	443, 460
Cfr13I	GGNCC	2 cut(s)	109, 466
Csp6I	GTAC	1 cut(s)	137
CviAII	CATG	2 cut(s)	155, 415
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	2 cut(s)	297, 424
DpnII	GATC	2 cut(s)	295, 422
DraI	TTTAAA	1 cut(s)	339
EaeI	YGGCCR	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	466
EcoRII	CCWGG	2 cut(s)	24, 160
FaeI	CATG	2 cut(s)	158, 418
FaiI	YATR	8 cut(s)	38, 151, 156, 204, 281, 332, 416, 435
FatI	CATG	2 cut(s)	154, 414
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	446, 494
FokI	GGATG	2 cut(s)	41, 142
Fsp4HI	GCNGC	2 cut(s)	446, 494
FspBI	CTAG	1 cut(s)	396
GluI	GCNGC	2 cut(s)	446, 494
GsaI	CCCAGC	1 cut(s)	66
HaeIII	GGCC	4 cut(s)	19, 110, 284, 431
Hin1II	CATG	2 cut(s)	158, 418
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	4 cut(s)	211, 224, 371, 476
Hpy188I	TCNGA	4 cut(s)	88, 229, 376, 475
Hpy188III	TCNNGA	2 cut(s)	142, 347
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	2 cut(s)	158, 196
HpyF3I	CTNAG	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	158, 418
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	295, 422
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	1 cut(s)	396
MalI	GATC	2 cut(s)	297, 424
MboI	GATC	2 cut(s)	295, 422
MhlI	GDGCHC	1 cut(s)	70
MlsI	TGGCCA	1 cut(s)	19
MluCI	AATT	2 cut(s)	94, 334
MluNI	TGGCCA	1 cut(s)	19
MlyI	GAGTC	2 cut(s)	205, 380
MnlI	CCTC	6 cut(s)	33, 197, 223, 267, 370, 457
Mox20I	TGGCCA	1 cut(s)	19
MscI	TGGCCA	1 cut(s)	19
MseI	TTAA	6 cut(s)	48, 54, 183, 234, 338, 381
Msp20I	TGGCCA	1 cut(s)	19
MspA1I	CMGCKG	2 cut(s)	458, 496
MspR9I	CCNGG	2 cut(s)	26, 162
MvaI	CCWGG	2 cut(s)	26, 162
MvnI	CGCG	1 cut(s)	441
NdeII	GATC	2 cut(s)	295, 422
NlaIII	CATG	2 cut(s)	158, 418
NlaIV	GGNNCC	4 cut(s)	69, 111, 264, 412
PfeI	GAWTC	2 cut(s)	224, 476
PflFI	GACNNNGTC	1 cut(s)	214
PkrI	GCNGC	2 cut(s)	447, 495
PleI	GAGTC	2 cut(s)	205, 379
PpsI	GAGTC	2 cut(s)	205, 379
PsiI	TTATAA	1 cut(s)	332
Psp6I	CCWGG	2 cut(s)	24, 160
PspFI	CCCAGC	1 cut(s)	62
PspGI	CCWGG	2 cut(s)	24, 160
PspN4I	GGNNCC	4 cut(s)	69, 111, 264, 412
PspPI	GGNCC	2 cut(s)	109, 466
PsyI	GACNNNGTC	1 cut(s)	214
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
SaqAI	TTAA	6 cut(s)	48, 54, 183, 234, 338, 381
SatI	GCNGC	2 cut(s)	446, 494
Sau3AI	GATC	2 cut(s)	295, 422
Sau96I	GGNCC	2 cut(s)	109, 466
SchI	GAGTC	2 cut(s)	205, 380
ScrFI	CCNGG	2 cut(s)	26, 162
SduI	GDGCHC	1 cut(s)	70
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	363
SinI	GGWCC	1 cut(s)	466
SmlI	CTYRAG	2 cut(s)	188, 247
SmoI	CTYRAG	2 cut(s)	188, 247
Sse9I	AATT	2 cut(s)	94, 334
SsiI	CCGC	3 cut(s)	439, 456, 496
SspMI	CTAG	1 cut(s)	396
StyD4I	CCNGG	2 cut(s)	24, 160
TaaI	ACNGT	1 cut(s)	82
TasI	AATT	2 cut(s)	94, 334
TfiI	GAWTC	2 cut(s)	224, 476
Tru1I	TTAA	6 cut(s)	48, 54, 183, 234, 338, 381
Tru9I	TTAA	6 cut(s)	48, 54, 183, 234, 338, 381
TseI	GCWGC	2 cut(s)	445, 493
TspDTI	ATGAA	2 cut(s)	45, 246
TspGWI	ACGGA	1 cut(s)	204
Tth111I	GACNNNGTC	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	466
XapI	RAATTY	2 cut(s)	94, 334
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.