Rh1AG113400

Protein FAR1-RELATED SEQUENCE 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003477
Physical Location & Seq
Reverse (-)
19574687 .. 19580888
6202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG113400.1

Sequence Viewer

Length: 1233 bp
ATGGACACTGAAGTTTTGGCAGATGTTGAAGCGGAAGACAGGGAACGTCACGGGACAGTAGACTCTGAATCTGATAAAGGTGTAAAGCAAAATGTAAATGATAGTTTTGCAGGGAGAGAAATAATTGTACAGGATGAGGATGGGAATGCTAAACCATATGTGGGAATGGAGTTCGAATCAGAGGATGCTGCCAAGGCTCTCTATGAGGCGTATGCTAGGTGTGCTGGTTTTAGCACCCATGTTGGTCAGTTTACTCGTAACAAGCCTGATGGACCAATAGTGACATGGGAATTTGCATGTTCAAGAGAGGTATTCAAAAGAAAGAATGTTGAAAGTTGCAATGCTATGCTACGCGTAGAGAGAAAAGATGCAAACACTTGGGTTGCCACTAAGTTTATTGAGGACCACAACCATTCGATGGAAAGTCCAAATAAAGTCCATTACCTTCGACCGCGTAGACACTTTGCAGGTGCTACAAAGAATACAGCTGAGACTTTGGATGTCACTTCTGATGCTTATGTCTCTATGGATGGGAATCCTGTCCCTTATGAACCAAATCGTGGAGAAGAAGGGGCAGTTGCTGTAGAGACTTACAATGCAGCAATGATTGCTCTACGAGACAGTGGGAAAAAGATTGCTGATTTGAAGAAAAATGTTGCTAAAGTTGCACCTCCTAGCTCTCAGGGTAGTGGAAGTATTCAGGAAGAAAATATGAAAAAAGCTTCTTTGCCATTTGGTGAAATGGTCCCCCCATTGTGGCCTTGGCAAGAAGCATTGCCACATCGCTTTAATCTTAATGATGTTGGAGTTCCTGTTTCTGATATAAATCAGCCTAGCATGGCAGGCTCTATTCAACCCGATGGTGGGCATCCTGATAATACGGTGGTTTATACTTGCTTCAAGTCCATGACATGGGTCATAGAAAATAAGAATTCAACATCAGCTGGAAAAGTTGCTGTTATTAACTTGAAGCTGCAAGATTATCGCAAGAACCCGGCAGGAGAAACAGATGTACAATTTAGGGTAACCAGGGTTACACTAGAGCCTATGTTAAGATCGATGGCCTACATTGGTCAGCAACTTTCTGCACCAGCCAACAGAGTTGCTGTTATCAATCTCAAGCTTCAAGATACAAATACAACATCTGGAGAAACAGAAGTCAAGTTTCAAGTGTCCAGAGATACACTAGATTCCATGTTGAGATCAATGGCTTACATCCGTGAACAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMM_domain FAR1 MULE SWIM

Protein Analysis

410

Amino Acids

45.53

Weight (kDa)

5.46

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 67 - 140 3.8e-12 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 458
Acc36I ACCTGC 1 cut(s) 458
AccB7I CCANNNNNTGG 3 cut(s) 418, 560, 912
AccI GTMKAC 2 cut(s) 60, 457
AccII CGCG 2 cut(s) 354, 454
AciI CCGC 2 cut(s) 32, 452
AcsI RAATTY 2 cut(s) 290, 931
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 2 cut(s) 129, 1014
AfiI CCNNNNNNNGG 7 cut(s) 161, 418, 560, 756, 863, 864, 912
AflIII ACRYGT 1 cut(s) 352
AjnI CCWGG 1 cut(s) 1028
AluBI AGCT 6 cut(s) 488, 678, 722, 944, 973, 1123
AluI AGCT 6 cut(s) 488, 678, 722, 944, 973, 1123
Alw26I GTCTC 4 cut(s) 485, 526, 581, 612
AlwNI CAGNNNCTG 1 cut(s) 581
AoxI GGCC 2 cut(s) 758, 1062
ApeKI GCWGC 3 cut(s) 188, 599, 973
ApoI RAATTY 2 cut(s) 290, 931
AspS9I GGNCC 3 cut(s) 272, 403, 745
AsuC2I CCSGG 1 cut(s) 995
AsuHPI GGTGA 1 cut(s) 749
AsuII TTCGAA 1 cut(s) 174
AvaII GGWCC 3 cut(s) 272, 403, 745
BbsI GAAGAC 1 cut(s) 42
BbvI GCAGC 3 cut(s) 175, 611, 960
BccI CCATC 6 cut(s) 134, 263, 412, 524, 854, 1054
BcgI CGANNNNNNTGC 2 cut(s) 965, 999
BciT130I CCWGG 1 cut(s) 1030
BcnI CCSGG 1 cut(s) 995
BcoDI GTCTC 4 cut(s) 485, 526, 581, 612
BfaI CTAG 5 cut(s) 216, 675, 834, 1040, 1187
BfmI CTRYAG 1 cut(s) 582
BfuAI ACCTGC 1 cut(s) 458
BisI GCNGC 3 cut(s) 189, 600, 974
BlsI GCNGC 3 cut(s) 190, 601, 975
Bme1390I CCNGG 2 cut(s) 995, 1030
Bme18I GGWCC 3 cut(s) 272, 403, 745
BmgT120I GGNCC 3 cut(s) 272, 403, 745
BmiI GGNNCC 1 cut(s) 747
BmrFI CCNGG 2 cut(s) 995, 1030
BmsI GCATC 4 cut(s) 175, 358, 502, 877
BoxI GACNNNNGTC 1 cut(s) 914
BpiI GAAGAC 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 1167
Bpu14I TTCGAA 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 1103
BpuMI CCSGG 1 cut(s) 995
Bsa29I ATCGAT 1 cut(s) 1058
BsaBI GATNNNNATC 2 cut(s) 534, 825
BsaJI CCNNGG 3 cut(s) 192, 761, 1029
BsaXI ACNNNNNCTCC 2 cut(s) 798, 828
Bsc4I CCNNNNNNNGG 7 cut(s) 161, 418, 560, 756, 863, 864, 912
Bse3DI GCAATG 3 cut(s) 346, 609, 773
Bse8I GATNNNNATC 2 cut(s) 534, 825
BseBI CCWGG 1 cut(s) 1030
BseCI ATCGAT 1 cut(s) 1058
BseDI CCNNGG 3 cut(s) 192, 761, 1029
BseGI GGATG 7 cut(s) 139, 145, 190, 505, 535, 868, 1215
BseJI GATNNNNATC 2 cut(s) 534, 825
BseLI CCNNNNNNNGG 7 cut(s) 161, 418, 560, 756, 863, 864, 912
BseMI GCAATG 3 cut(s) 346, 609, 773
BseMII CTCAG 2 cut(s) 480, 695
BseXI GCAGC 3 cut(s) 175, 611, 960
BsgI GTGCAG 1 cut(s) 1071
Bsh1236I CGCG 2 cut(s) 354, 454
Bsh1285I CGRYCG 1 cut(s) 452
BshFI GGCC 2 cut(s) 760, 1064
BshVI ATCGAT 1 cut(s) 1058
BsiEI CGRYCG 1 cut(s) 452
BsiSI CCGG 1 cut(s) 995
BslFI GGGAC 3 cut(s) 67, 527, 731
BslI CCNNNNNNNGG 7 cut(s) 161, 418, 560, 756, 863, 864, 912
BsmAI GTCTC 4 cut(s) 485, 526, 581, 612
BsmFI GGGAC 3 cut(s) 67, 527, 731
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 2 cut(s) 760, 1064
Bsp119I TTCGAA 1 cut(s) 174
Bsp1407I TGTACA 2 cut(s) 127, 1012
Bsp143I GATC 2 cut(s) 1055, 1202
BspACI CCGC 2 cut(s) 32, 452
BspANI GGCC 2 cut(s) 760, 1064
BspCNI CTCAG 2 cut(s) 481, 694
BspDI ATCGAT 1 cut(s) 1058
BspFNI CGCG 2 cut(s) 354, 454
BspLI GGNNCC 1 cut(s) 747
BspMI ACCTGC 1 cut(s) 458
BspT104I TTCGAA 1 cut(s) 174
BsrDI GCAATG 3 cut(s) 346, 609, 773
BsrGI TGTACA 2 cut(s) 127, 1012
BssECI CCNNGG 3 cut(s) 192, 761, 1029
BssMI GATC 2 cut(s) 1055, 1202
BssT1I CCWWGG 2 cut(s) 192, 761
Bst2UI CCWGG 1 cut(s) 1030
Bst4CI ACNGT 3 cut(s) 58, 623, 883
BstAPI GCANNNNNTGC 1 cut(s) 608
BstAUI TGTACA 2 cut(s) 127, 1012
BstBI TTCGAA 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 844
BstDEI CTNAG 3 cut(s) 390, 489, 681
BstEII GGTNACC 1 cut(s) 1024
BstF5I GGATG 7 cut(s) 139, 145, 190, 505, 535, 868, 1215
BstFNI CGCG 2 cut(s) 354, 454
BstKTI GATC 2 cut(s) 1058, 1205
BstMAI GTCTC 4 cut(s) 485, 526, 581, 612
BstMBI GATC 2 cut(s) 1055, 1202
BstMCI CGRYCG 1 cut(s) 452
BstMWI GCNNNNNNNGC 5 cut(s) 194, 221, 608, 665, 843
BstNI CCWGG 1 cut(s) 1030
BstNSI RCATGY 1 cut(s) 300
BstPAI GACNNNNGTC 1 cut(s) 914
BstPI GGTNACC 1 cut(s) 1024
BstSCI CCNGG 2 cut(s) 993, 1028
BstSFI CTRYAG 1 cut(s) 582
BstUI CGCG 2 cut(s) 354, 454
BstV1I GCAGC 3 cut(s) 175, 611, 960
BstV2I GAAGAC 1 cut(s) 42
Bsu15I ATCGAT 1 cut(s) 1058
BsuRI GGCC 2 cut(s) 760, 1064
BsuTUI ATCGAT 1 cut(s) 1058
BtgZI GCGATG 1 cut(s) 767
BtsCI GGATG 7 cut(s) 139, 145, 190, 505, 535, 868, 1215
BtsIMutI CAGTG 2 cut(s) 6, 628
BveI ACCTGC 1 cut(s) 458
Cac8I GCNNGC 1 cut(s) 844
CaiI CAGNNNCTG 1 cut(s) 581
Cfr13I GGNCC 3 cut(s) 272, 403, 745
ClaI ATCGAT 1 cut(s) 1058
Csp6I GTAC 2 cut(s) 128, 1013
CviAII CATG 7 cut(s) 239, 285, 297, 838, 907, 912, 1195
CviQI GTAC 2 cut(s) 128, 1013
DdeI CTNAG 3 cut(s) 390, 489, 681
DpnI GATC 2 cut(s) 1057, 1204
DpnII GATC 2 cut(s) 1055, 1202
Eco130I CCWWGG 2 cut(s) 192, 761
Eco47I GGWCC 3 cut(s) 272, 403, 745
Eco57I CTGAAG 1 cut(s) 30
Eco91I GGTNACC 1 cut(s) 1024
EcoO65I GGTNACC 1 cut(s) 1024
EcoRI GAATTC 1 cut(s) 931
EcoRII CCWGG 1 cut(s) 1028
EcoT14I CCWWGG 2 cut(s) 192, 761
ErhI CCWWGG 2 cut(s) 192, 761
FaeI CATG 7 cut(s) 242, 288, 300, 841, 910, 915, 1198
FaqI GGGAC 3 cut(s) 67, 527, 731
FatI CATG 7 cut(s) 238, 284, 296, 837, 906, 911, 1194
FauNDI CATATG 1 cut(s) 157
FblI GTMKAC 2 cut(s) 60, 457
Fnu4HI GCNGC 3 cut(s) 189, 600, 974
FokI GGATG 7 cut(s) 146, 152, 197, 512, 542, 855, 1202
Fsp4HI GCNGC 3 cut(s) 189, 600, 974
FspBI CTAG 5 cut(s) 216, 675, 834, 1040, 1187
GluI GCNGC 3 cut(s) 189, 600, 974
GsuI CTGGAG 1 cut(s) 1167
HaeIII GGCC 2 cut(s) 760, 1064
HapII CCGG 1 cut(s) 995
Hin1II CATG 7 cut(s) 242, 288, 300, 841, 910, 915, 1198
HindIII AAGCTT 2 cut(s) 720, 1121
HinfI GANTC 5 cut(s) 62, 68, 176, 535, 1190
HpaII CCGG 1 cut(s) 995
HphI GGTGA 1 cut(s) 749
Hpy166II GTNNAC 4 cut(s) 61, 252, 458, 1223
Hpy188I TCNGA 5 cut(s) 67, 73, 181, 511, 820
Hpy188III TCNNGA 6 cut(s) 303, 701, 872, 1127, 1146, 1176
Hpy8I GTNNAC 4 cut(s) 61, 252, 458, 1223
HpyAV CCTTC 2 cut(s) 455, 563
HpyCH4III ACNGT 3 cut(s) 58, 623, 883
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 9 cut(s) 110, 296, 339, 371, 467, 599, 668, 976, 1088
HpyF10VI GCNNNNNNNGC 5 cut(s) 194, 221, 608, 665, 843
HpyF3I CTNAG 3 cut(s) 390, 489, 681
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 7 cut(s) 242, 288, 300, 841, 910, 915, 1198
Kzo9I GATC 2 cut(s) 1055, 1202
Lsp1109I GCAGC 3 cut(s) 175, 611, 960
LweI GCATC 4 cut(s) 175, 358, 502, 877
MaeI CTAG 5 cut(s) 216, 675, 834, 1040, 1187
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 6 cut(s) 47, 257, 280, 502, 1024, 1033
MalI GATC 2 cut(s) 1057, 1204
MboI GATC 2 cut(s) 1055, 1202
MboII GAAGA 4 cut(s) 47, 578, 658, 716
MluCI AATT 4 cut(s) 123, 290, 931, 1016
MluI ACGCGT 1 cut(s) 352
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 784
MnlI CCTC 6 cut(s) 130, 175, 199, 301, 394, 681
MseI TTAA 4 cut(s) 789, 795, 963, 1052
MspA1I CMGCKG 2 cut(s) 488, 944
MspI CCGG 1 cut(s) 995
MspR9I CCNGG 2 cut(s) 995, 1030
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 1 cut(s) 1030
MvnI CGCG 2 cut(s) 354, 454
MwoI GCNNNNNNNGC 5 cut(s) 194, 221, 608, 665, 843
NciI CCSGG 1 cut(s) 995
NdeI CATATG 1 cut(s) 157
NdeII GATC 2 cut(s) 1055, 1202
NlaIII CATG 7 cut(s) 242, 288, 300, 841, 910, 915, 1198
NlaIV GGNNCC 1 cut(s) 747
NmuCI GTSAC 3 cut(s) 47, 280, 502
NspI RCATGY 1 cut(s) 300
NspV TTCGAA 1 cut(s) 174
PaqCI CACCTGC 1 cut(s) 458
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 4 cut(s) 68, 176, 535, 1190
PflMI CCANNNNNTGG 3 cut(s) 418, 560, 912
PkrI GCNGC 3 cut(s) 190, 601, 975
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PshAI GACNNNNGTC 1 cut(s) 914
Psp6I CCWGG 1 cut(s) 1028
PspEI GGTNACC 1 cut(s) 1024
PspGI CCWGG 1 cut(s) 1028
PspN4I GGNNCC 1 cut(s) 747
PspPI GGNCC 3 cut(s) 272, 403, 745
PstNI CAGNNNCTG 1 cut(s) 581
PvuII CAGCTG 2 cut(s) 488, 944
RsaI GTAC 2 cut(s) 129, 1014
RsaNI GTAC 2 cut(s) 128, 1013
SaqAI TTAA 4 cut(s) 789, 795, 963, 1052
SatI GCNGC 3 cut(s) 189, 600, 974
Sau3AI GATC 2 cut(s) 1055, 1202
Sau96I GGNCC 3 cut(s) 272, 403, 745
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 2 cut(s) 995, 1030
SfaNI GCATC 4 cut(s) 175, 358, 502, 877
SfcI CTRYAG 1 cut(s) 582
SfuI TTCGAA 1 cut(s) 174
SinI GGWCC 3 cut(s) 272, 403, 745
SmlI CTYRAG 1 cut(s) 1118
SmoI CTYRAG 1 cut(s) 1118
Sse9I AATT 4 cut(s) 123, 290, 931, 1016
SsiI CCGC 2 cut(s) 32, 452
SspMI CTAG 5 cut(s) 216, 675, 834, 1040, 1187
StyD4I CCNGG 2 cut(s) 993, 1028
StyI CCWWGG 2 cut(s) 192, 761
TaaI ACNGT 3 cut(s) 58, 623, 883
TaiI ACGT 1 cut(s) 49
TaqI TCGA 4 cut(s) 174, 416, 448, 1058
TasI AATT 4 cut(s) 123, 290, 931, 1016
TatI WGTACW 2 cut(s) 127, 1012
TfiI GAWTC 4 cut(s) 68, 176, 535, 1190
Tru1I TTAA 4 cut(s) 789, 795, 963, 1052
Tru9I TTAA 4 cut(s) 789, 795, 963, 1052
TscAI CASTG 2 cut(s) 13, 628
TseFI GTSAC 3 cut(s) 47, 280, 502
TseI GCWGC 3 cut(s) 188, 599, 973
Tsp45I GTSAC 3 cut(s) 47, 280, 502
TspDTI ATGAA 2 cut(s) 564, 728
TspGWI ACGGA 1 cut(s) 1208
TspRI CASTG 2 cut(s) 13, 628
Van91I CCANNNNNTGG 3 cut(s) 418, 560, 912
VpaK11BI GGWCC 3 cut(s) 272, 403, 745
XapI RAATTY 2 cut(s) 290, 931
XceI RCATGY 1 cut(s) 300
XcmI CCANNNNNNNNNTGG 2 cut(s) 282, 759
XmiI GTMKAC 2 cut(s) 60, 457
XspI CTAG 5 cut(s) 216, 675, 834, 1040, 1187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.